Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 4.7e-112 408.3 274 100.0
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 3.5e-51 206.1 220 58.2
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 3.2e-44 183.0 219 56.6
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 5.5e-36 155.6 211 50.7
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 6.0e-35 152.1 221 48.4
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 5.1e-34 149.1 221 50.7
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 1.6e-32 144.1 205 48.3
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 4.0e-31 139.4 210 51.4
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 4.0e-31 139.4 222 46.8
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 6.9e-31 138.7 216 47.2
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 1.2e-30 137.9 215 48.8
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 3.4e-30 136.3 225 47.6
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 1.0e-29 134.8 220 45.0
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 6.5e-29 132.1 217 47.0
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 8.4e-29 131.7 212 48.1
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 1.1e-28 131.3 213 41.3
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 5.5e-28 129.0 211 46.9
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 5.5e-28 129.0 202 45.5
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 1.2e-27 127.9 225 43.6
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 1.2e-27 127.9 206 44.7
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 2.1e-27 127.1 208 44.7
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 2.7e-27 126.7 218 45.9
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 7.9e-27 125.2 206 46.1
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 3.0e-26 123.2 205 45.4
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 3.9e-26 122.9 198 46.5
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 5.1e-26 122.5 208 48.1
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 8.7e-26 121.7 210 46.2
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 8.7e-26 121.7 221 43.0
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 1.9e-25 120.6 221 42.5
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 2.5e-25 120.2 208 44.2
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 2.5e-25 120.2 205 42.9
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 2.5e-25 120.2 205 42.9
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.3e-25 119.8 206 47.6
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 1.1e-23 114.8 207 43.5
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 3.1e-23 113.2 207 42.5
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 3.1e-23 113.2 206 41.7
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 4.1e-23 112.8 217 41.5
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 1.5e-22 110.9 223 40.4
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 2.0e-22 110.5 223 40.8
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 2.6e-22 110.2 206 41.7
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 4.5e-22 109.4 203 41.4
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 5.9e-22 109.0 216 38.9
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 1.0e-21 108.2 219 42.0
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.0e-21 108.2 216 40.7
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 1.7e-21 107.5 204 42.6
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 2.9e-21 106.7 212 37.7
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 6.5e-21 105.5 206 39.3
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 8.5e-21 105.1 225 41.3
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 8.5e-21 105.1 216 40.3
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 1.4e-20 104.4 205 43.9
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 1.9e-20 104.0 203 39.4
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 5.5e-20 102.4 223 38.6
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 9.3e-20 101.7 205 38.5
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.6e-19 100.9 209 41.1
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 2.7e-19 100.1 222 39.2
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 3.6e-19 99.8 226 37.2
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 1.4e-18 97.8 210 40.5
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 1.4e-18 97.8 202 39.6
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 1.8e-18 97.4 195 39.0
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 3.0e-18 96.7 206 37.4
Nn1g00145 Nelumbo nucifera HOM05D006310 ORTHO05D007768 1.1e-17 94.7 220 39.1
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 1.9e-17 94.0 221 35.7
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 2.5e-17 93.6 212 37.7
Aqoxy3G02279 Aquilegia oxysepala HOM05D006310 ORTHO05D007768 3.3e-17 93.2 223 39.9
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 4.3e-17 92.8 209 42.6
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 5.7e-17 92.4 202 39.6
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 9.7e-17 91.7 212 40.6
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 1.3e-16 91.3 200 38.5
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 1.7e-16 90.9 208 39.9
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 1.7e-16 90.9 222 35.1
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 3.7e-16 89.7 207 38.6
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 6.3e-16 89.0 215 41.4
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 8.2e-16 88.6 225 40.0
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 1.1e-15 88.2 200 38.0
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.4e-15 87.8 210 39.5
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 1.8e-15 87.4 209 39.7
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 2.4e-15 87.0 220 39.1
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 2.4e-15 87.0 215 39.5
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 9.1e-15 85.1 225 37.3
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 2.0e-14 84.0 205 36.1
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 2.6e-14 83.6 205 41.5
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 2.6e-14 83.6 208 36.1
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 4.5e-14 82.8 206 39.8
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 5.9e-14 82.4 208 38.5
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 7.7e-14 82.0 198 37.9
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 1.3e-13 81.3 198 36.9
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 1.3e-13 81.3 205 41.0
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 1.7e-13 80.9 198 38.4
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 1.7e-13 80.9 198 37.4
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 1.7e-13 80.9 205 40.0
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 2.2e-13 80.5 199 39.2
CDE06G1171 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 2.9e-13 80.1 201 34.3
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 2.9e-13 80.1 210 35.2
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 3.8e-13 79.7 206 35.4
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 5.0e-13 79.3 202 35.1
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 1.4e-12 77.8 205 34.1
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.4e-12 77.8 223 34.1
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 1.9e-12 77.4 201 33.3
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 2.5e-12 77.0 206 35.0
Peaxi162Scf00184g00001 Petunia axillaris HOM05D006310 ORTHO05D007768 3.2e-12 76.6 211 35.1
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 3.2e-12 76.6 210 31.4
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 3.2e-12 76.6 205 34.1
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 5.5e-12 75.9 206 35.0
Eucgr.E00268 Eucalyptus grandis HOM05D006310 ORTHO05D007768 7.2e-12 75.5 53 69.8
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 9.4e-12 75.1 206 34.5
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 2.1e-11 73.9 212 38.2
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 2.7e-11 73.6 202 38.1
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 7.9e-11 72.0 227 33.0
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 1.4e-10 71.2 197 36.0
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 1.4e-10 71.2 199 33.2
Eucgr.E00267 Eucalyptus grandis HOM05D006310 ORTHO05D007768 5.1e-10 69.3 50 70.0
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 6.7e-10 68.9 77 50.6
Ah.07g200600 Amaranthus hybridus HOM05D006310 ORTHO05D007768 2.8e-08 63.5 196 36.7
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 8.2e-08 62.0 207 38.2
ATR1120G200 Amborella trichopoda HOM05D001903 ORTHO05D001847 1.1e-07 61.6 230 30.9
CsaV3_1G030300 Cucumis sativus L. HOM05D001903 ORTHO05D001847 1.4e-07 61.2 224 28.6
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 3.1e-07 60.1 195 29.7
unitig_699.g19788 Utricularia gibba HOM05D006310 ORTHO05D007768 3.1e-07 60.1 40 65.0
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 4.1e-07 59.7 172 32.0
Atru.chr7.1135 Acer truncatum HOM05D001903 ORTHO05D001847 5.3e-07 59.3 199 33.7
HanXRQChr03g0062821 Helianthus annuus HOM05D001903 ORTHO05D001847 6.9e-07 58.9 164 34.8
Lsat_1_v5_gn_7_107661 Lactuca sativa HOM05D001903 ORTHO05D001847 1.2e-06 58.2 173 31.8
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 1.2e-06 58.2 200 32.5
TAR626G1723 Trochodendron aralioides HOM05D001903 ORTHO05D001847 1.5e-06 57.8 217 31.8
MELO3C010333.2 Cucumis melo HOM05D001903 ORTHO05D001847 2.0e-06 57.4 210 31.9
QL02p088755 Quercus lobata HOM05D001903 ORTHO05D001847 2.6e-06 57.0 216 32.4
CDE07G0415 Ceratophyllum demersum HOM05D001903 ORTHO05D001847 3.4e-06 56.6 50 52.0
Aqoxy3G02851 Aquilegia oxysepala HOM05D001903 ORTHO05D001847 5.9e-06 55.8 50 54.0
Aqoxy54s001 Aquilegia oxysepala HOM05D001903 ORTHO05D001847 5.9e-06 55.8 50 54.0
Aqoxy7G03684 Aquilegia oxysepala HOM05D001903 ORTHO05D001847 5.9e-06 55.8 50 54.0
Prupe.3G085500 Prunus persica HOM05D001903 ORTHO05D001847 5.9e-06 55.8 108 39.8


User provided reference genes

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