Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 6.3e-129 464.2 242 100.0
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 1.1e-101 373.6 246 81.3
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 7.3e-101 370.9 247 78.5
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 7.3e-101 370.9 246 80.9
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 1.2e-100 370.2 248 79.0
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 8.1e-100 367.5 245 77.6
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 2.3e-99 365.9 248 77.8
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 5.2e-99 364.8 249 79.5
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 5.2e-99 364.8 249 79.5
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 8.9e-99 364.0 246 80.1
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 2.6e-98 362.5 248 77.4
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 2.6e-98 362.5 248 76.2
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.6e-98 362.5 248 77.8
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 3.4e-98 362.1 248 75.8
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.8e-98 361.3 248 77.4
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 5.8e-98 361.3 248 77.4
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 7.6e-98 360.9 248 76.2
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 7.6e-98 360.9 246 76.0
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 1.7e-97 359.8 244 76.6
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 4.9e-97 358.2 248 79.8
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 8.3e-97 357.5 243 77.4
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 8.3e-97 357.5 257 75.9
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 1.4e-96 356.7 249 77.9
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 1.9e-96 356.3 249 75.1
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.4e-96 355.9 245 77.1
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.2e-96 355.5 246 77.6
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 5.4e-96 354.8 242 76.0
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 5.4e-96 354.8 246 77.6
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 5.4e-96 354.8 245 75.5
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 7.1e-96 354.4 246 77.2
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 9.2e-96 354.0 265 72.1
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 3.5e-95 352.1 243 77.0
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 3.5e-95 352.1 252 76.2
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 1.0e-94 350.5 246 73.6
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 1.0e-94 350.5 247 74.1
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 2.3e-94 349.4 247 73.7
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 3.0e-94 349.0 248 74.2
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.9e-94 348.6 248 73.4
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 5.1e-94 348.2 248 73.4
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 5.1e-94 348.2 246 74.4
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 5.1e-94 348.2 246 74.4
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 8.6e-94 347.4 253 74.3
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 8.6e-94 347.4 249 75.1
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.9e-93 346.3 245 73.9
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 2.5e-93 345.9 249 75.1
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 3.3e-93 345.5 243 77.8
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 4.3e-93 345.1 248 73.8
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 5.6e-93 344.7 248 74.2
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 2.1e-92 342.8 251 71.7
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.1e-92 342.8 248 72.6
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 3.6e-92 342.0 248 72.6
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 3.6e-92 342.0 249 74.3
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 4.7e-92 341.7 257 72.4
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 4.7e-92 341.7 249 74.3
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 4.7e-92 341.7 245 74.7
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 6.8e-91 337.8 251 72.9
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 8.9e-91 337.4 248 73.4
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 1.2e-90 337.0 243 73.7
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 2.0e-90 336.3 252 72.6
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 2.6e-90 335.9 256 73.4
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 2.6e-90 335.9 245 73.1
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 3.4e-90 335.5 255 70.6
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 3.4e-90 335.5 247 73.3
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 9.9e-90 334.0 252 72.2
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 2.9e-89 332.4 249 70.7
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 2.9e-89 332.4 213 78.4
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 3.8e-89 332.0 235 76.2
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 6.4e-89 331.3 250 70.4
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 8.4e-89 330.9 247 72.5
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 1.9e-88 329.7 247 70.9
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 3.2e-88 328.9 247 74.9
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 7.1e-88 327.8 249 71.5
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 9.3e-88 327.4 256 71.1
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 1.2e-87 327.0 247 70.4
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.2e-87 327.0 247 70.4
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 1.2e-87 327.0 256 71.9
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.6e-87 326.6 247 70.4
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.6e-87 326.6 247 70.4
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.6e-87 326.6 247 70.4
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 1.6e-87 326.6 246 70.7
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.1e-87 326.2 247 70.4
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 4.6e-87 325.1 236 72.5
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 4.6e-87 325.1 245 73.5
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 1.0e-86 323.9 241 72.6
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 2.3e-86 322.8 237 73.4
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.9e-86 322.0 236 72.0
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.9e-86 322.0 246 69.9
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 6.6e-86 321.2 240 67.1
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 6.6e-86 321.2 245 67.8
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 6.6e-86 321.2 243 70.8
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 8.7e-86 320.9 213 78.4
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 1.1e-85 320.5 243 65.8
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 1.1e-85 320.5 242 69.0
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 1.5e-85 320.1 243 65.8
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 1.5e-85 320.1 249 64.7
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 1.9e-85 319.7 238 73.5
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 4.3e-85 318.5 243 65.4
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.3e-85 318.5 204 79.4
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 5.6e-85 318.2 246 66.7
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 7.3e-85 317.8 248 66.9
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 1.3e-84 317.0 246 66.3
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 1.3e-84 317.0 243 65.4
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.6e-84 316.6 231 73.2
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 2.1e-84 316.2 245 65.7
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 2.1e-84 316.2 244 66.0
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 2.1e-84 316.2 250 66.0
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.8e-84 315.1 215 75.8
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 1.8e-83 313.2 253 68.8
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 1.8e-83 313.2 242 67.4
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 3.1e-83 312.4 228 74.1
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 5.3e-83 311.6 313 59.1
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 2.6e-82 309.3 264 65.9
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 4.4e-82 308.5 237 71.3
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 4.9e-81 305.1 244 64.8
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 1.1e-80 303.9 241 68.9
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 1.4e-80 303.5 248 65.3
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 9.3e-80 300.8 246 64.2
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 6.0e-79 298.1 321 55.5
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.3e-78 296.2 232 68.1
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 3.0e-78 295.8 243 61.3
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 3.9e-78 295.4 244 62.3
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 6.6e-78 294.7 244 62.7
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.9e-77 293.1 248 60.9
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 3.3e-77 292.4 251 62.5
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 9.6e-77 290.8 251 62.2
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 2.8e-76 289.3 248 61.7
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 3.6e-76 288.9 246 62.2
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 3.6e-76 288.9 246 62.2
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 3.6e-76 288.9 246 62.2
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 4.0e-75 285.4 246 61.8
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 6.9e-75 284.6 387 48.1
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 1.1e-72 277.3 256 60.2
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 3.3e-69 265.8 247 57.5
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.6e-66 256.1 233 60.5
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 2.6e-66 256.1 246 58.1
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 4.5e-66 255.4 252 57.9
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 1.7e-65 253.4 243 58.4
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.2e-63 247.3 237 60.8
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 4.6e-63 245.4 252 54.8
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 7.4e-61 238.0 136 83.8
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.8e-60 236.1 152 76.3
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 4.8e-60 235.3 147 76.9
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 6.9e-59 231.5 246 54.9
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.2e-55 220.7 210 58.1
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.0e-54 217.6 169 65.7
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.9e-53 213.4 169 63.9
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.3e-52 210.7 270 48.9
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.7e-47 193.0 188 58.0
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 3.3e-45 186.0 288 44.4
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 1.7e-44 183.7 113 76.1
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 5.0e-41 172.2 117 71.8
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 1.7e-36 157.1 130 70.0
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 2.0e-34 150.2 294 39.5
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.0e-33 147.9 127 67.7
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 1.2e-31 141.0 276 36.2
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 2.7e-26 123.2 95 61.1
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 5.9e-26 122.1 87 65.5
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 7.7e-26 121.7 96 72.9
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 5.0e-25 119.0 69 82.6
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 2.7e-23 113.2 94 63.8
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 6.3e-20 102.1 75 72.0
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 7.0e-19 98.6 120 55.0
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 2.7e-18 96.7 75 68.0
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 3.5e-18 96.3 93 48.4
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 7.2e-16 88.6 110 36.4
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.2e-15 87.8 95 54.7
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 4.0e-14 82.8 95 58.9
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 3.1e-11 73.2 81 51.9
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 9.2e-11 71.6 129 43.4
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 2.8e-07 60.1 106 34.0


User provided reference genes

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