Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 2.4e-136 488.8 245 100.0
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 3.9e-110 401.7 233 84.5
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 1.5e-109 399.8 232 84.9
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 2.5e-109 399.1 232 86.2
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 1.1e-107 393.7 231 84.4
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 5.3e-107 391.3 234 82.5
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 6.9e-107 391.0 232 82.8
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 6.9e-107 391.0 230 83.9
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 7.6e-106 387.5 231 82.7
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 1.0e-105 387.1 235 80.9
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 1.3e-105 386.7 242 81.8
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 2.2e-105 386.0 231 84.0
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 2.9e-105 385.6 243 81.1
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 8.4e-105 384.0 231 83.5
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 8.4e-105 384.0 242 81.4
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.9e-104 382.9 236 81.4
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 1.9e-104 382.9 237 81.4
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 1.9e-104 382.9 235 81.3
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 1.2e-103 380.2 230 81.7
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 1.2e-103 380.2 230 81.7
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 1.6e-103 379.8 230 81.3
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 1.6e-103 379.8 235 80.4
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 2.1e-103 379.4 232 79.7
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 3.5e-103 378.6 231 81.0
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 4.6e-103 378.3 245 76.3
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 6.0e-103 377.9 232 79.3
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.3e-102 376.7 232 81.0
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 1.8e-102 376.3 231 81.4
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.8e-102 376.3 230 79.6
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 2.3e-102 375.9 239 77.4
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 2.3e-102 375.9 244 77.9
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 2.3e-102 375.9 237 81.4
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 6.7e-102 374.4 235 78.3
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 8.7e-102 374.0 239 75.7
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 1.1e-101 373.6 235 79.1
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 1.5e-101 373.2 232 79.3
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.9e-101 372.9 230 78.7
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 3.3e-101 372.1 231 78.4
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 3.3e-101 372.1 231 79.2
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 4.3e-101 371.7 255 76.1
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 4.3e-101 371.7 247 75.3
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 7.4e-101 370.9 239 77.0
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 9.6e-101 370.5 234 79.1
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 9.6e-101 370.5 235 79.6
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 1.6e-100 369.8 230 79.1
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 1.6e-100 369.8 232 79.3
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 1.6e-100 369.8 240 75.8
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 3.7e-100 368.6 231 79.7
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 4.8e-100 368.2 232 76.3
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 4.8e-100 368.2 235 77.4
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 4.8e-100 368.2 231 79.2
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 6.3e-100 367.9 244 75.4
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 6.3e-100 367.9 231 78.4
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 1.4e-99 366.7 231 78.4
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 1.8e-99 366.3 235 78.7
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 2.4e-99 365.9 235 75.7
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 3.1e-99 365.5 233 77.3
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 4.1e-99 365.2 231 78.8
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 6.9e-99 364.4 230 78.7
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 9.0e-99 364.0 232 77.2
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.2e-98 363.6 230 77.8
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 2.0e-98 362.8 231 78.8
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 2.0e-98 362.8 239 76.6
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 4.5e-98 361.7 231 77.9
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 4.5e-98 361.7 232 76.7
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 4.5e-98 361.7 232 76.7
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 5.9e-98 361.3 230 76.1
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 7.6e-98 360.9 231 78.8
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 1.0e-97 360.5 230 75.7
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 5.0e-97 358.2 231 75.3
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 8.5e-97 357.5 231 73.6
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 1.4e-96 356.7 231 74.5
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 1.4e-96 356.7 232 75.9
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 1.9e-96 356.3 231 75.8
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 5.5e-96 354.8 230 75.7
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 5.5e-96 354.8 231 74.9
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 5.5e-96 354.8 251 73.3
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 3.6e-95 352.1 230 74.3
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 6.1e-95 351.3 232 75.9
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 6.1e-95 351.3 232 75.9
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 1.3e-94 350.1 248 71.8
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 1.3e-94 350.1 231 74.0
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 3.9e-94 348.6 233 72.5
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 6.7e-94 347.8 233 75.1
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 8.7e-94 347.4 231 74.5
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 8.7e-94 347.4 233 72.5
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 3.3e-93 345.5 234 71.8
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 3.3e-93 345.5 294 62.2
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 4.3e-93 345.1 231 74.0
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 1.3e-92 343.6 231 72.7
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 1.3e-92 343.6 231 72.7
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 1.3e-92 343.6 231 72.7
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 1.9e-88 329.7 262 64.5
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 1.2e-87 327.0 196 82.1
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 1.4e-86 323.6 335 55.2
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 9.7e-85 317.4 231 71.4
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 1.7e-84 316.6 194 80.9
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 3.7e-84 315.5 194 79.4
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 9.1e-83 310.8 238 63.4
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 1.7e-81 306.6 244 63.1
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 7.9e-79 297.7 223 66.4
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 3.7e-76 288.9 234 62.0
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 6.5e-73 278.1 200 67.5
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.6e-63 246.9 169 77.5
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 1.4e-62 243.8 157 78.3
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 4.4e-61 238.8 157 75.8
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 2.2e-60 236.5 157 75.8
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-59 233.4 157 73.2
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 5.4e-59 231.9 159 73.0
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 2.0e-53 213.4 182 59.3
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 2.6e-53 213.0 130 83.8
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 6.3e-52 208.4 131 76.3
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 1.2e-50 204.1 133 75.9
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 5.9e-50 201.8 122 78.7
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 7.8e-50 201.4 176 63.6
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 3.3e-48 196.1 171 63.2
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 1.2e-47 194.1 225 51.1
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.0e-46 191.0 127 73.2
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-46 189.9 154 64.3
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 4.0e-46 189.1 154 63.6
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-45 187.6 153 64.1
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-45 186.8 154 63.6
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 9.8e-45 184.5 154 64.3
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 2.9e-44 183.0 154 62.3
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.4e-43 179.9 152 62.5
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 2.7e-42 176.4 154 60.4
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-41 173.3 173 56.1
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-38 164.1 141 62.4
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-36 157.1 154 58.4
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 9.2e-35 151.4 113 72.6
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-33 147.1 91 78.0
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 1.7e-33 147.1 104 73.1
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 5.0e-33 145.6 104 70.2
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 9.5e-32 141.4 162 53.1
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 9.5e-32 141.4 162 53.1
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-31 140.6 125 61.6
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 4.7e-31 139.0 105 69.5
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 6.2e-31 138.7 121 62.0
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 8.9e-30 134.8 88 73.9
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 2.6e-29 133.3 258 36.8
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 4.4e-29 132.5 124 59.7
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 9.9e-29 131.3 76 80.3
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 1.0e-25 121.3 135 51.9
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-25 120.6 156 48.7
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-20 104.4 67 74.6
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-20 103.6 133 45.9
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 8.7e-17 91.7 57 77.2
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 1.1e-16 91.3 54 77.8
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-16 90.5 101 51.5
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-15 87.4 89 56.2
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 4.3e-08 62.8 36 77.8
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 1.3e-07 61.2 116 35.3
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 1.8e-06 57.4 35 68.6
arahy.Tifrunner.gnm1.ann1.54H2MY Arachis hypogaea HOM05D001155 ORTHO05D015979 5.3e-06 55.8 43 62.8


User provided reference genes

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