Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A18T48 Lonicera japonica HOM05D003299 ORTHO05D003811 8.7e-23 109.4 53 100.0
Potri.008G036400 Populus trichocarpa HOM05D003299 ORTHO05D003811 4.3e-14 80.5 41 92.7
Sabra08G0024500 Salix brachista HOM05D003299 ORTHO05D003811 4.3e-14 80.5 41 92.7
Hma1.2p1_0438F.1_g153110 Hydrangea macrophylla HOM05D003299 ORTHO05D003811 2.8e-13 77.8 47 78.7
Thecc.10G079700 Theobroma cacao HOM05D003299 ORTHO05D003811 2.8e-13 77.8 48 77.1
TAR623G0928 Trochodendron aralioides HOM05D003299 ORTHO05D003811 2.8e-13 77.8 43 83.7
Eucgr.J01067 Eucalyptus grandis HOM05D003299 ORTHO05D003811 3.7e-13 77.4 37 97.3
CSS0049751 Camellia sinensis var. sinensis HOM05D003299 ORTHO05D003811 4.8e-13 77.0 46 78.3
PSO339G5755 Papaver somniferum HOM05D003299 ORTHO05D003811 4.8e-13 77.0 41 90.2
PSO801G0679 Papaver somniferum HOM05D003299 ORTHO05D003811 4.8e-13 77.0 41 90.2
Glyma.02G161200 Glycine max HOM05D003299 ORTHO05D003811 6.2e-13 76.6 37 91.9
Gohir.A05G294600 Gossypium hirsutum HOM05D003299 ORTHO05D003811 6.2e-13 76.6 48 75.0
GSVIVG01016235001 Vitis vinifera HOM05D003299 ORTHO05D003811 8.1e-13 76.3 40 87.5
Actinidia06742 Actinidia chinensis HOM05D003299 ORTHO05D003811 1.4e-12 75.5 43 83.7
Gohir.D05G295200 Gossypium hirsutum HOM05D003299 ORTHO05D003811 1.4e-12 75.5 46 76.1
CiPaw.01G270000 Carya illinoinensis HOM05D003299 ORTHO05D003811 1.8e-12 75.1 41 85.4
DCAR_019092 Daucus carota HOM05D003299 ORTHO05D003811 1.8e-12 75.1 43 79.1
Gorai.009G311900 Gossypium raimondii HOM05D003299 ORTHO05D003811 1.8e-12 75.1 48 72.9
Medtr1g050322 Medicago truncatula HOM05D003299 ORTHO05D003811 1.8e-12 75.1 41 85.4
Phvul.007G239200 Phaseolus vulgaris HOM05D003299 ORTHO05D003811 2.4e-12 74.7 37 89.2
TWI63G0314 Tripterygium wilfordii HOM05D003299 ORTHO05D003811 2.4e-12 74.7 41 85.4
Peaxi162Scf00296g00715 Petunia axillaris HOM05D003299 ORTHO05D003811 3.1e-12 74.3 42 83.3
vmacro07125 Vaccinium macrocarpon HOM05D003299 ORTHO05D003811 3.1e-12 74.3 47 72.3
Lj6g0007833 Lotus japonicus HOM05D003299 ORTHO05D003811 4.0e-12 73.9 39 84.6
MD01G1104800 Malus domestica HOM05D003299 ORTHO05D003811 5.3e-12 73.6 37 89.2
Aqoxy2G01795 Aquilegia oxysepala HOM05D003299 ORTHO05D003811 6.9e-12 73.2 41 82.9
Atru.chr12.828 Acer truncatum HOM05D003299 ORTHO05D003811 9.0e-12 72.8 40 80.0
Ciclev10032804m.g Citrus clementina HOM05D003299 ORTHO05D003811 9.0e-12 72.8 43 76.7
Psat6g094000 Pisum sativum HOM05D003299 ORTHO05D003811 9.0e-12 72.8 41 82.9
SGA_v2.0_scaffold51G18707 Striga asiatica HOM05D003299 ORTHO05D003811 9.0e-12 72.8 47 72.3
Solyc11g008450.2 Solanum lycopersicum HOM05D003299 ORTHO05D003811 1.2e-11 72.4 47 72.3
Sopen11g004240 Solanum pennellii HOM05D003299 ORTHO05D003811 1.2e-11 72.4 47 72.3
PGSC0003DMG400007425 Solanum tuberosum HOM05D003299 ORTHO05D003811 1.2e-11 72.4 47 72.3
Migut.F01723 Erythranthe guttata HOM05D003299 ORTHO05D003811 1.5e-11 72.0 46 69.6
HanXRQChr09g0246861 Helianthus annuus HOM05D003299 ORTHO05D003811 2.0e-11 71.6 43 76.7
Nitab4.5_0004385g0010 Nicotiana tabacum HOM05D003299 ORTHO05D003811 5.8e-11 70.1 43 74.4
MSTRG.8135 Avicennia marina HOM05D003299 ORTHO05D003811 7.6e-11 69.7 47 70.2
Sp6g38490 Schrenkiella parvula HOM05D003299 ORTHO05D003811 7.6e-11 69.7 37 81.1
BolC9t60001H Brassica oleracea HOM05D003299 ORTHO05D003811 1.3e-10 68.9 37 81.1
BraA10t45234Z Brassica rapa HOM05D003299 ORTHO05D003811 1.3e-10 68.9 37 81.1
AL6G13880 Arabidopsis lyrata HOM05D003299 ORTHO05D003811 1.7e-10 68.6 37 81.1
AT5G04260 Arabidopsis thaliana HOM05D003299 ORTHO05D003811 1.7e-10 68.6 37 81.1
CARHR209020 Cardamine hirsuta HOM05D003299 ORTHO05D003811 1.7e-10 68.6 37 81.1
ATR0680G138 Amborella trichopoda HOM05D003299 ORTHO05D003811 2.2e-10 68.2 40 75.0
Carub.0006s0321 Capsella rubella HOM05D003299 ORTHO05D003811 2.2e-10 68.2 37 78.4
Nn2g11556 Nelumbo nucifera HOM05D003299 ORTHO05D003811 3.8e-10 67.4 39 76.9
Cc02_g11050 Coffea canephora HOM05D003299 ORTHO05D003811 4.9e-10 67.0 38 78.9
arahy.Tifrunner.gnm1.ann1.A87VPW Arachis hypogaea HOM05D003299 ORTHO05D003811 8.4e-10 66.2 37 78.4
arahy.Tifrunner.gnm1.ann1.JYTW4X Arachis hypogaea HOM05D003299 ORTHO05D003811 8.4e-10 66.2 37 78.4
Thhalv10014762m.g Eutrema salsugineum HOM05D003299 ORTHO05D003811 8.4e-10 66.2 37 75.7
Lalb_Chr21g0313761 Lupinus albus HOM05D003299 ORTHO05D003811 1.4e-09 65.5 41 70.7
THA.LOC104816424 Tarenaya hassleriana HOM05D003299 ORTHO05D003811 1.4e-09 65.5 36 75.0
MELO3C012410.2 Cucumis melo HOM05D003299 ORTHO05D003811 1.9e-09 65.1 45 68.9
CsaV3_5G036090 Cucumis sativus L. HOM05D003299 ORTHO05D003811 1.9e-09 65.1 45 68.9
ClCG05G021170 Citrullus lanatus HOM05D003299 ORTHO05D003811 3.2e-09 64.3 45 71.1
Lsat_1_v5_gn_5_164480 Lactuca sativa HOM05D003299 ORTHO05D003811 4.2e-09 63.9 39 69.2
Cpa.g.sc53.111 Carica papaya HOM05D003299 ORTHO05D003811 5.5e-09 63.5 35 82.9
FAN01G0418 Fragaria x ananassa HOM05D003299 ORTHO05D003811 5.5e-09 63.5 38 78.9
FAN03G3169 Fragaria x ananassa HOM05D003299 ORTHO05D003811 5.5e-09 63.5 38 78.9
FAN06G4627 Fragaria x ananassa HOM05D003299 ORTHO05D003811 5.5e-09 63.5 38 78.9
FAN10G4229 Fragaria x ananassa HOM05D003299 ORTHO05D003811 5.5e-09 63.5 38 78.9
Nitab4.5_0002343g0020 Nicotiana tabacum HOM05D003299 ORTHO05D003811 5.5e-09 63.5 39 69.2
Sopen10g029540 Solanum pennellii HOM05D003299 ORTHO05D003811 5.5e-09 63.5 39 69.2
PGSC0003DMG400011420 Solanum tuberosum HOM05D003299 ORTHO05D003811 5.5e-09 63.5 39 69.2
RcHm_v2.0_Chr1g0362831 Rosa chinensis HOM05D003299 ORTHO05D003811 7.1e-09 63.2 38 78.9
SMO296G0030 Selaginella moellendorffii HOM05D003299 ORTHO05D003811 7.1e-09 63.2 41 63.4
CDE11G1023 Ceratophyllum demersum HOM05D003299 ORTHO05D003811 9.3e-09 62.8 39 69.2
Haze_16847 Corylus avellana HOM05D003299 ORTHO05D003811 9.3e-09 62.8 37 75.7
HanXRQChr01g0010601 Helianthus annuus HOM05D003299 ORTHO05D003811 9.3e-09 62.8 38 71.1
Rhsim04G0095100 Rhododendron simsii HOM05D003299 ORTHO05D003811 9.3e-09 62.8 39 71.8
Sed0000333 Sechium edule HOM05D003299 ORTHO05D003811 9.3e-09 62.8 43 69.8
CANSAT64G0867 Cannabis sativa HOM05D003299 ORTHO05D003811 1.2e-08 62.4 37 73.0
FAN10G1005 Fragaria x ananassa HOM05D003299 ORTHO05D003811 1.2e-08 62.4 38 78.9
TPR.G10648 Trifolium pratense HOM05D003299 ORTHO05D003811 1.2e-08 62.4 37 75.7
Aa31LG1G21100 Aethionema arabicum HOM05D003299 ORTHO05D003811 1.6e-08 62.0 45 60.0
ClCG04G002040 Citrullus lanatus HOM05D003299 ORTHO05D003811 1.6e-08 62.0 37 73.0
Haze_20011 Corylus avellana HOM05D003299 ORTHO05D003811 1.6e-08 62.0 38 68.4
PGR004G2598 Punica granatum HOM05D003299 ORTHO05D003811 1.6e-08 62.0 38 68.4
CsaV3_4G030690 Cucumis sativus L. HOM05D003299 ORTHO05D003811 2.1e-08 61.6 38 68.4
Phvul.001G143700 Phaseolus vulgaris HOM05D003299 ORTHO05D003811 2.1e-08 61.6 38 68.4
Psat0s1815g0040 Pisum sativum HOM05D003299 ORTHO05D003811 2.1e-08 61.6 38 68.4
TWI53G1909 Tripterygium wilfordii HOM05D003299 ORTHO05D003811 2.1e-08 61.6 38 68.4
Aqoxy1G00138 Aquilegia oxysepala HOM05D003299 ORTHO05D003811 2.7e-08 61.2 38 68.4
CSS0028495 Camellia sinensis var. sinensis HOM05D003299 ORTHO05D003811 2.7e-08 61.2 38 68.4
Cc06_g15720 Coffea canephora HOM05D003299 ORTHO05D003811 2.7e-08 61.2 39 64.1
SGA_v2.0_scaffold105G30497 Striga asiatica HOM05D003299 ORTHO05D003811 2.7e-08 61.2 38 68.4
Actinidia17282 Actinidia chinensis HOM05D003299 ORTHO05D003811 3.5e-08 60.8 38 68.4
CiPaw.09G029200 Carya illinoinensis HOM05D003299 ORTHO05D003811 3.5e-08 60.8 38 68.4
Medtr7g093490 Medicago truncatula HOM05D003299 ORTHO05D003811 3.5e-08 60.8 38 68.4
Nitab4.5_0000105g0200 Nicotiana tabacum HOM05D003299 ORTHO05D003811 3.5e-08 60.8 38 68.4
Rhsim04G0095900 Rhododendron simsii HOM05D003299 ORTHO05D003811 3.5e-08 60.8 38 71.1
HPP92_004382 Vanilla planifolia HOM05D003299 ORTHO05D003811 3.5e-08 60.8 38 65.8
AagrBONN_evm.TU.Sc2ySwM_344.3569 Anthoceros agrestis HOM05D003299 ORTHO05D003811 4.6e-08 60.5 38 65.8
Migut.J01849 Erythranthe guttata HOM05D003299 ORTHO05D003811 4.6e-08 60.5 38 63.2
Lj2A365T91 Lonicera japonica HOM05D003299 ORTHO05D003811 4.6e-08 60.5 38 65.8
MD12G1055400 Malus domestica HOM05D003299 ORTHO05D003811 4.6e-08 60.5 39 64.1
MD14G1054800 Malus domestica HOM05D003299 ORTHO05D003811 4.6e-08 60.5 39 64.1
Os02g0819200 Oryza sativa ssp. japonica HOM05D003299 ORTHO05D003811 4.6e-08 60.5 37 67.6
VMungo1383G3238 Vigna mungo HOM05D003299 ORTHO05D003811 4.6e-08 60.5 38 68.4
GSVIVG01033478001 Vitis vinifera HOM05D003299 ORTHO05D003811 4.6e-08 60.5 38 65.8
CDE11G0607 Ceratophyllum demersum HOM05D003299 ORTHO05D003811 6.0e-08 60.1 38 68.4
Dinv24058 Davidia involucrata HOM05D003299 ORTHO05D003811 6.0e-08 60.1 38 65.8
RcHm_v2.0_Chr3g0479301 Rosa chinensis HOM05D003299 ORTHO05D003811 6.0e-08 60.1 38 65.8
Hund19208 Selenicereus undatus HOM05D003299 ORTHO05D003811 6.0e-08 60.1 38 65.8
FAN02G3918 Fragaria x ananassa HOM05D003299 ORTHO05D003811 7.9e-08 59.7 36 72.2
Glyma.03G146000 Glycine max HOM05D003299 ORTHO05D003811 7.9e-08 59.7 38 65.8
Hma1.2p1_1478F.1_g285970 Hydrangea macrophylla HOM05D003299 ORTHO05D003811 7.9e-08 59.7 38 73.7
Rhsim03G0117200 Rhododendron simsii HOM05D003299 ORTHO05D003811 7.9e-08 59.7 33 78.8
Sc06g0007530 Simmondsia chinensis HOM05D003299 ORTHO05D003811 7.9e-08 59.7 37 67.6
COL.COLO4_29346 Corchorus olitorius HOM05D003299 ORTHO05D003811 1.0e-07 59.3 38 65.8
Eucgr.A02464 Eucalyptus grandis HOM05D003299 ORTHO05D003811 1.0e-07 59.3 38 65.8
FvH4_6g22000 Fragaria vesca HOM05D003299 ORTHO05D003811 1.0e-07 59.3 38 65.8
Lj1g0027959 Lotus japonicus HOM05D003299 ORTHO05D003811 1.0e-07 59.3 38 65.8
Potri.016G059500 Populus trichocarpa HOM05D003299 ORTHO05D003811 1.0e-07 59.3 38 65.8
Ciclev10012859m.g Citrus clementina HOM05D003299 ORTHO05D003811 1.3e-07 58.9 38 63.2
DCAR_019851 Daucus carota HOM05D003299 ORTHO05D003811 1.3e-07 58.9 40 62.5
Sed0027853 Sechium edule HOM05D003299 ORTHO05D003811 1.3e-07 58.9 38 63.2
TAR369G0094 Trochodendron aralioides HOM05D003299 ORTHO05D003811 1.3e-07 58.9 38 65.8
Atru.chr8.1147 Acer truncatum HOM05D003299 ORTHO05D003811 1.8e-07 58.5 37 64.9
Duzib093G1666 Durio zibethinus HOM05D003299 ORTHO05D003811 2.3e-07 58.2 38 63.2
Gohir.A04G051800 Gossypium hirsutum HOM05D003299 ORTHO05D003811 2.3e-07 58.2 38 65.8
Gohir.D04G089600 Gossypium hirsutum HOM05D003299 ORTHO05D003811 2.3e-07 58.2 38 65.8
Lalb_Chr15g0079071 Lupinus albus HOM05D003299 ORTHO05D003811 2.3e-07 58.2 38 60.5
Nitab4.5_0004325g0060 Nicotiana tabacum HOM05D003299 ORTHO05D003811 2.3e-07 58.2 33 78.8
Prupe.7G079900 Prunus persica HOM05D003299 ORTHO05D003811 2.3e-07 58.2 38 63.2
MBI19_g17415_MAGBIO Magnolia biondii HOM05D003299 ORTHO05D003811 3.0e-07 57.8 37 67.6
PSO339G1966 Papaver somniferum HOM05D003299 ORTHO05D003811 3.0e-07 57.8 38 63.2
BcaC06g32385 Brassica carinata HOM05D003299 ORTHO05D003811 3.9e-07 57.4 37 64.9
BcaC06g32553 Brassica carinata HOM05D003299 ORTHO05D003811 3.9e-07 57.4 37 64.9
BolC9t59750H Brassica oleracea HOM05D003299 ORTHO05D003811 3.9e-07 57.4 37 64.9
BraA10t45011Z Brassica rapa HOM05D003299 ORTHO05D003811 3.9e-07 57.4 37 64.9
Aa31sc40G30 Aethionema arabicum HOM05D003299 ORTHO05D003811 5.1e-07 57.0 37 64.9
Cpa.g.sc85.59 Carica papaya HOM05D003299 ORTHO05D003811 5.1e-07 57.0 37 64.9
A10p31900 Brassica napus HOM05D003299 ORTHO05D003811 6.7e-07 56.6 31 77.4
EL10Ac3g06893 Beta vulgaris HOM05D003299 ORTHO05D003811 8.7e-07 56.2 38 60.5
CDE05G3298 Ceratophyllum demersum HOM05D003299 ORTHO05D003811 8.7e-07 56.2 38 63.2
HanXRQChr13g0390541 Helianthus annuus HOM05D003299 ORTHO05D003811 8.7e-07 56.2 38 65.8
AL6G16780 Arabidopsis lyrata HOM05D003299 ORTHO05D003811 1.1e-06 55.8 37 62.2
BcaC06g32129 Brassica carinata HOM05D003299 ORTHO05D003811 1.1e-06 55.8 33 69.7
Thhalv10015512m.g Eutrema salsugineum HOM05D003299 ORTHO05D003811 1.1e-06 55.8 37 62.2
Sp6g36180 Schrenkiella parvula HOM05D003299 ORTHO05D003811 1.1e-06 55.8 37 62.2
HPP92_020760 Vanilla planifolia HOM05D003299 ORTHO05D003811 1.1e-06 55.8 37 59.5
TPR.G35788 Trifolium pratense HOM05D003299 ORTHO05D003811 1.9e-06 55.1 38 57.9
Pp3c4_20740 Physcomitrium patens HOM05D003299 ORTHO05D003811 2.5e-06 54.7 41 53.7
CBR_g38474 Chara braunii HOM05D001763 ORTHO05D001810 4.3e-06 53.9 38 57.9
ECA248G0025 Erigeron canadensis HOM05D003641 ORTHO05D004915 4.3e-06 53.9 42 57.1
THA.LOC104799287 Tarenaya hassleriana HOM05D003299 ORTHO05D003811 4.3e-06 53.9 37 62.2
C01p24990 Brassica napus HOM05D003299 ORTHO05D003811 7.4e-06 53.1 31 74.2
BolC1t02443H Brassica oleracea HOM05D003299 ORTHO05D003811 7.4e-06 53.1 31 74.2
CAN.G960.9 Capsicum annuum HOM05D003299 ORTHO05D003811 7.4e-06 53.1 37 59.5
SalBow6G4679 Salvia bowleyana HOM05D003299 ORTHO05D003811 7.4e-06 53.1 40 60.0
SMO265G0009 Selaginella moellendorffii HOM05D003299 ORTHO05D003811 7.4e-06 53.1 37 59.5
Carub.0006s0557 Capsella rubella HOM05D003299 ORTHO05D003811 9.6e-06 52.8 36 61.1
unitig_578.g16265 Utricularia gibba HOM05D003299 ORTHO05D003811 9.6e-06 52.8 38 55.3


User provided reference genes

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