Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 1.9e-253 878.6 431 100.0
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 3.0e-222 775.0 441 86.6
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 3.7e-220 768.1 441 85.9
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 1.7e-217 759.2 442 85.3
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 1.6e-215 752.7 441 84.1
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.0e-214 750.0 441 84.4
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.0e-214 750.0 441 84.4
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 2.3e-214 748.8 441 83.4
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 3.0e-214 748.4 441 83.7
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 6.7e-214 747.3 441 84.8
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 8.7e-214 746.9 441 82.8
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 3.3e-213 745.0 441 82.3
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 4.3e-213 744.6 441 82.8
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 9.6e-213 743.4 441 83.2
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 9.6e-213 743.4 441 83.2
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 1.6e-212 742.7 442 83.0
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 1.1e-211 740.0 441 82.5
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 1.8e-211 739.2 441 83.0
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 1.8e-211 739.2 441 81.9
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.2e-210 736.5 441 81.6
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 2.6e-210 735.3 441 81.4
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 2.6e-210 735.3 441 82.5
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 5.8e-210 734.2 441 81.9
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 5.8e-210 734.2 441 81.2
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 5.8e-210 734.2 441 81.4
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 7.6e-210 733.8 441 81.2
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.0e-209 733.4 441 81.4
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 1.0e-209 733.4 441 82.5
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 1.0e-209 733.4 441 81.9
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 1.3e-209 733.0 441 81.6
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 1.3e-209 733.0 441 82.1
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 2.2e-209 732.3 442 82.4
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 2.2e-209 732.3 442 81.7
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 2.2e-209 732.3 442 82.4
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 2.9e-209 731.9 440 82.3
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 4.9e-209 731.1 441 81.4
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 4.9e-209 731.1 441 81.2
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 8.4e-209 730.3 445 81.6
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 1.1e-208 729.9 441 81.9
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.4e-208 729.6 448 80.4
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 1.9e-208 729.2 441 81.0
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 3.2e-208 728.4 441 81.4
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 4.2e-208 728.0 441 81.2
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 4.2e-208 728.0 441 81.0
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 4.2e-208 728.0 441 81.0
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 5.5e-208 727.6 441 81.2
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 1.2e-207 726.5 441 80.7
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 1.2e-207 726.5 441 80.7
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 1.6e-207 726.1 442 81.4
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 2.1e-207 725.7 441 81.0
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 2.1e-207 725.7 440 81.8
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 2.1e-207 725.7 441 80.7
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 2.7e-207 725.3 441 81.6
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 4.6e-207 724.5 441 81.9
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 7.9e-207 723.8 441 81.0
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 1.0e-206 723.4 441 80.0
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 1.8e-206 722.6 441 80.5
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 1.8e-206 722.6 441 80.5
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 3.0e-206 721.8 441 80.0
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 3.0e-206 721.8 441 80.7
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 5.1e-206 721.1 441 79.1
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 5.1e-206 721.1 441 80.7
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 1.5e-205 719.5 441 80.3
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 2.5e-205 718.8 441 78.9
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 5.7e-205 717.6 441 79.8
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 5.7e-205 717.6 441 79.8
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 5.7e-205 717.6 442 80.8
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 7.4e-205 717.2 441 79.6
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 9.7e-205 716.8 441 80.3
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 9.7e-205 716.8 419 85.0
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 1.6e-204 716.1 441 80.0
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 2.8e-204 715.3 441 79.4
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 3.7e-204 714.9 441 79.4
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 4.8e-204 714.5 442 79.4
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 8.2e-204 713.8 441 78.9
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 8.2e-204 713.8 442 79.4
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 1.4e-203 713.0 442 79.0
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 1.8e-203 712.6 442 80.1
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 2.4e-203 712.2 442 79.2
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 4.1e-203 711.4 441 79.8
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 4.1e-203 711.4 441 79.6
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 4.1e-203 711.4 441 80.3
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 9.0e-203 710.3 441 80.3
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 9.0e-203 710.3 442 79.2
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 1.2e-202 709.9 441 80.3
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 1.2e-202 709.9 441 78.9
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 3.4e-202 708.4 441 78.9
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 4.5e-202 708.0 441 79.1
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.7e-201 706.1 441 79.4
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 8.5e-201 703.7 443 77.7
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 4.2e-200 701.4 441 77.1
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 4.2e-200 701.4 588 64.5
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 7.2e-200 700.7 441 79.4
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 7.2e-200 700.7 441 78.2
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 1.6e-199 699.5 442 78.3
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 4.6e-199 698.0 441 76.9
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 3.3e-197 691.8 441 77.1
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 3.3e-197 691.8 441 77.1
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 4.3e-197 691.4 461 74.8
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 5.7e-197 691.0 442 76.9
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 1.3e-196 689.9 461 74.8
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 2.2e-196 689.1 441 76.2
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 4.8e-196 688.0 441 76.4
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 4.8e-196 688.0 442 76.2
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 3.1e-195 685.3 441 75.3
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 1.2e-194 683.3 441 74.8
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 2.5e-192 675.6 441 74.1
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 1.8e-190 669.5 404 80.0
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 1.8e-190 669.5 441 75.1
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 2.3e-190 669.1 572 64.0
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 1.5e-189 666.4 442 74.9
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 2.0e-189 666.0 428 75.2
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 2.2e-185 652.5 400 80.8
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 6.5e-185 651.0 401 80.8
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 8.5e-185 650.6 399 80.7
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 1.8e-182 642.9 441 76.9
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 4.8e-180 634.8 441 69.2
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 2.4e-179 632.5 365 84.4
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 1.0e-177 627.1 441 68.3
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 5.5e-176 621.3 465 66.0
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 1.2e-175 620.2 446 67.7
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 1.6e-175 619.8 441 67.3
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 1.2e-165 587.0 441 63.7
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 3.7e-164 582.0 441 63.5
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 3.4e-157 558.9 441 63.0
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 1.3e-156 557.0 443 61.9
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 4.5e-154 548.5 412 68.4
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 2.3e-142 509.6 392 67.3
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 9.8e-141 504.2 412 60.9
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 3.6e-127 459.1 585 49.1
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 1.8e-126 456.8 313 71.6
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 3.3e-104 382.9 443 48.8
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 1.3e-100 370.9 262 69.8
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 4.8e-87 325.9 432 45.8
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 8.8e-81 305.1 332 50.3
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 2.3e-73 280.4 205 70.2
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 1.1e-72 278.1 148 90.5
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 7.0e-54 215.7 131 77.1
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 1.0e-36 158.7 94 79.8
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 3.1e-33 147.1 94 76.6
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 2.3e-28 131.0 88 72.7
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 2.3e-25 120.9 167 40.1
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 8.9e-17 92.4 46 91.3
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 3.7e-15 87.0 82 53.7
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 1.2e-13 82.0 45 88.9
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 3.5e-13 80.5 53 75.5
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 8.6e-12 75.9 44 84.1
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 8.6e-12 75.9 44 84.1
A09p35740 Brassica napus HOM05D004282 ORTHO05D017169 1.1e-09 68.9 41 80.5
A09p59280 Brassica napus HOM05D004282 ORTHO05D017169 1.1e-09 68.9 41 80.5
BraA09t41310Z Brassica rapa HOM05D004282 ORTHO05D017169 1.1e-09 68.9 41 80.5
A03p47680 Brassica napus HOM05D004282 ORTHO05D017169 1.3e-07 62.0 38 78.9
BraA09t37854Z Brassica rapa HOM05D004282 ORTHO05D017169 1.3e-07 62.0 38 78.9
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 1.3e-07 62.0 41 70.7
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 2.4e-06 57.8 44 63.6


User provided reference genes

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