Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 2825.4 1402 100.0
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1896.3 1576 63.8
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1748.4 1555 60.5
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1738.8 1569 60.4
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1727.6 1582 59.2
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1693.3 1565 59.3
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1689.5 1561 59.3
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1660.6 1560 58.4
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1648.3 1557 57.7
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1630.5 1557 57.5
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1628.6 1551 57.2
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1620.5 1553 56.8
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1619.8 1557 57.2
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1617.4 1566 56.9
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1615.5 1541 57.3
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1607.4 1573 56.9
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1604.7 1558 56.5
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1595.9 1551 56.0
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1592.4 1573 55.6
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1592.0 1525 56.9
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1592.0 1551 56.6
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1589.3 1555 56.5
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1583.2 1555 56.3
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1581.2 1520 57.0
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1580.8 1559 55.6
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1578.1 1653 53.5
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1578.1 1520 56.8
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1575.8 1534 55.1
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1574.7 1512 57.2
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1572.4 1567 55.7
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1565.8 1568 54.8
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1560.8 1586 54.1
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1560.4 1529 56.3
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1560.0 1498 56.4
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1560.0 1550 55.5
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1558.1 1587 54.6
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1554.3 1434 58.5
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1546.6 1557 54.7
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1540.8 1562 54.7
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1538.1 1647 52.8
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1537.7 1545 53.9
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1513.8 1553 53.1
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1506.1 1579 53.3
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1506.1 1558 53.1
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1488.4 1524 54.0
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1481.5 1562 52.8
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1470.3 1565 53.4
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1469.1 1556 52.4
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1463.4 1548 53.7
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1461.0 1550 52.4
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1453.3 1618 50.7
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1451.0 1563 51.7
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1450.3 1550 51.9
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1439.5 1559 52.0
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1439.5 1562 51.9
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1438.3 1527 51.9
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1436.4 1556 51.9
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1435.6 1536 52.1
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1431.8 1546 51.3
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1430.6 1564 51.5
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1430.2 1562 51.3
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1429.5 1528 51.4
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1429.5 1528 51.4
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1424.8 1557 51.3
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1422.1 1554 50.8
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1421.4 1557 51.4
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1420.2 1547 50.7
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1420.2 1530 51.6
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1417.9 1523 51.6
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1417.9 1542 51.6
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1412.5 1550 51.3
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1412.1 1556 50.8
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1406.3 1549 50.9
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1390.2 1540 50.9
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1388.2 1545 50.4
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1384.0 1579 50.5
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1380.5 1532 50.7
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1376.7 1573 49.5
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1372.8 1549 49.8
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1371.3 1547 50.4
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1370.9 1541 50.1
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1357.8 1389 55.2
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1337.4 1375 54.5
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1332.0 1547 49.0
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1315.8 1550 47.9
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1300.4 1626 46.7
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1268.8 1162 59.6
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1267.3 1494 49.1
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1232.6 1419 49.3
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1213.7 1371 50.8
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1187.2 1191 55.7
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1186.4 1592 44.1
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1184.9 1122 58.5
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1169.5 1475 46.4
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 0.0e+00 1085.9 1544 42.2
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 2.2e-258 896.7 997 50.2
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 3.0e-231 806.6 1646 34.3
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 3.4e-190 670.2 515 70.1
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 5.6e-185 652.9 515 68.2
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 3.1e-183 647.1 908 42.1
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 2.8e-160 570.9 1450 30.2
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 3.0e-146 524.2 670 44.9
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 4.5e-134 483.8 1046 32.2
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 1.5e-110 405.6 405 53.6
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 2.5e-60 238.8 187 66.3
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 8.3e-56 223.8 257 46.7
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 7.6e-49 200.7 163 66.9
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 1.0e-37 163.7 107 69.2
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 5.4e-31 141.4 91 69.2
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 1.6e-27 129.8 90 64.4
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.0e-24 120.6 82 67.1
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 2.2e-24 119.4 81 66.7
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 6.0e-22 111.3 117 52.1
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 6.0e-22 111.3 117 52.1
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 3.0e-21 109.0 76 73.7
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.6e-19 103.2 65 83.1
Actinidia33727 Actinidia chinensis HOM05D006693 ORTHO05D008092 4.1e-10 72.0 91 46.2
Sabra01G0074000 Salix brachista HOM05D000115 ORTHO05D000464 1.3e-08 67.0 45 73.3


User provided reference genes

Program Settings