Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 4.1e-198 694.5 341 100.0
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 6.0e-133 478.0 342 70.5
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 2.3e-132 476.1 332 72.0
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.6e-130 469.9 343 68.8
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 4.7e-130 468.4 347 69.2
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 4.4e-128 461.8 343 67.1
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 6.4e-127 458.0 331 68.3
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 8.4e-127 457.6 332 67.8
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 1.1e-126 457.2 340 67.9
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 9.2e-126 454.1 332 69.9
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 9.2e-126 454.1 332 69.9
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 1.7e-124 449.9 334 68.3
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 1.9e-123 446.4 332 68.1
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 4.3e-123 445.3 332 67.2
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 5.6e-123 444.9 348 66.1
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 7.3e-123 444.5 357 63.3
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 9.6e-123 444.1 332 67.5
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 1.6e-122 443.4 331 67.7
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 2.8e-122 442.6 332 67.8
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 3.6e-122 442.2 332 68.4
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 4.7e-122 441.8 332 66.3
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 8.1e-122 441.0 343 63.6
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 1.4e-121 440.3 332 65.7
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 3.1e-121 439.1 325 68.0
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 3.1e-121 439.1 334 66.5
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 4.0e-121 438.7 332 66.6
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 6.8e-121 438.0 333 67.9
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 8.9e-121 437.6 334 65.6
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 2.6e-120 436.0 337 66.8
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 3.4e-120 435.6 336 66.7
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 2.2e-119 433.0 325 66.8
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 2.9e-119 432.6 342 63.2
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 4.9e-119 431.8 334 68.0
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.4e-118 430.3 331 64.7
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 1.4e-118 430.3 345 63.2
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 2.4e-118 429.5 339 64.9
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 4.2e-118 428.7 344 62.8
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 5.4e-118 428.3 344 64.5
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 2.1e-117 426.4 339 65.2
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 6.0e-117 424.9 334 66.2
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 7.8e-117 424.5 322 67.1
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.3e-116 423.7 356 62.6
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 1.3e-116 423.7 343 63.3
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 3.9e-116 422.2 332 64.2
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 5.1e-116 421.8 323 63.8
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 6.6e-116 421.4 325 66.2
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.1e-115 420.6 334 64.1
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 1.9e-115 419.9 323 65.0
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 5.6e-115 418.3 335 63.0
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 5.6e-115 418.3 344 61.9
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 9.6e-115 417.5 302 68.2
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 1.3e-114 417.2 369 59.6
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.1e-113 414.1 324 64.2
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 1.4e-113 413.7 343 62.7
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 3.1e-113 412.5 334 62.9
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 1.2e-112 410.6 336 62.5
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 2.0e-112 409.8 320 64.4
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.4e-112 408.7 324 63.6
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 7.6e-112 407.9 343 60.1
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 7.6e-112 407.9 302 66.9
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 9.9e-112 407.5 302 66.9
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 1.7e-111 406.8 303 66.0
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 2.9e-111 406.0 340 60.3
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 2.9e-111 406.0 326 64.7
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 2.9e-111 406.0 333 63.1
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 2.9e-111 406.0 313 64.5
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.8e-111 405.6 340 60.3
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 3.8e-111 405.6 326 63.5
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 3.8e-111 405.6 312 65.4
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.9e-110 403.3 319 63.0
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.4e-110 402.9 319 62.7
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 3.2e-110 402.5 332 63.0
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 5.4e-110 401.7 303 66.7
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.3e-108 397.1 319 62.1
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 2.3e-108 396.4 302 65.9
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 2.5e-107 392.9 329 60.8
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 4.3e-107 392.1 329 59.0
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 9.6e-107 391.0 358 57.0
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.3e-106 390.6 340 58.8
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 1.3e-106 390.6 331 62.8
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 3.6e-106 389.0 326 61.3
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 3.1e-105 386.0 332 60.8
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 4.0e-105 385.6 324 62.0
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 4.0e-105 385.6 350 58.0
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 9.9e-104 380.9 334 60.5
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 9.9e-104 380.9 332 60.8
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 1.3e-103 380.6 330 60.3
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 4.9e-103 378.6 363 55.6
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 7.1e-102 374.8 348 56.0
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 6.7e-100 368.2 331 57.1
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 1.1e-99 367.5 330 57.0
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 3.3e-99 365.9 330 56.7
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 4.3e-99 365.5 331 56.2
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 6.9e-97 358.2 330 54.5
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.6e-96 356.3 330 55.2
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 3.4e-96 355.9 353 55.2
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 1.7e-95 353.6 330 53.9
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 1.9e-94 350.1 340 53.8
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 2.5e-94 349.7 341 52.8
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 1.6e-93 347.1 343 53.1
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 2.1e-93 346.7 343 52.8
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 2.1e-93 346.7 343 52.8
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 2.1e-93 346.7 343 52.8
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 2.7e-93 346.3 343 53.1
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.0e-92 344.4 272 63.2
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 3.9e-92 342.4 343 53.4
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 1.2e-88 330.9 373 48.5
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 7.6e-88 328.2 330 49.7
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.0e-87 327.8 339 55.2
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 5.0e-87 325.5 301 54.5
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 6.5e-87 325.1 274 60.9
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.1e-85 320.1 329 52.6
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 2.5e-83 313.2 325 46.5
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 1.2e-80 304.3 235 66.8
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 1.9e-78 297.0 369 47.2
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 1.2e-77 294.3 311 46.6
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 2.1e-77 293.5 284 54.2
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 1.8e-76 290.4 318 48.1
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 9.7e-75 284.6 303 46.9
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 3.4e-72 276.2 180 72.8
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 3.4e-72 276.2 150 81.3
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 5.7e-59 232.3 276 46.7
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.3e-58 231.1 287 44.9
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 1.5e-54 217.6 334 41.3
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.5e-54 216.9 268 48.5
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 4.2e-54 216.1 296 39.5
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 4.0e-52 209.5 295 46.4
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 3.8e-47 193.0 123 69.9
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 6.3e-42 175.6 227 45.4
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.0e-39 168.3 328 32.9
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 4.7e-37 159.5 85 82.4
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 2.3e-36 157.1 165 55.2
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 5.7e-35 152.5 308 32.1
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 2.9e-34 150.2 105 73.3
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 5.9e-32 142.5 89 76.4
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 2.1e-29 134.0 173 43.4
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 2.8e-29 133.7 207 41.5
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 4.4e-27 126.3 88 62.5
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 2.5e-22 110.5 134 44.8
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 2.3e-20 104.0 123 43.9
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 3.1e-20 103.6 88 59.1
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 8.9e-20 102.1 104 53.8
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.6e-13 80.1 128 40.6
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.6e-13 80.1 128 40.6
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.7e-13 79.7 128 40.6
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 8.9e-12 75.5 102 46.1
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 1.2e-08 65.1 48 64.6
Ah.02g112160 Amaranthus hybridus HOM05D015883 ORTHO05D005553 1.0e-07 62.0 43 74.4


User provided reference genes

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