Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 9.6e-33 142.9 72 100.0
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 5.3e-15 84.0 60 75.0
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 1.5e-14 82.4 58 67.2
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 2.0e-14 82.0 58 70.7
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 4.5e-14 80.9 58 69.0
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 7.7e-14 80.1 60 61.7
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.7e-13 79.0 58 67.2
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 3.8e-13 77.8 62 66.1
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 5.5e-12 73.9 58 62.1
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 9.4e-12 73.2 58 65.5
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.2e-11 72.8 55 65.5
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.2e-11 72.8 55 65.5
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 1.6e-11 72.4 64 57.8
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 2.1e-11 72.0 62 61.3
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 3.6e-11 71.2 60 58.3
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 6.1e-11 70.5 60 65.0
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 1.0e-10 69.7 57 66.7
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 1.0e-10 69.7 61 68.9
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 1.8e-10 68.9 60 61.7
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 2.3e-10 68.6 63 58.7
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 2.3e-10 68.6 40 75.0
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 3.0e-10 68.2 58 60.3
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 3.0e-10 68.2 62 58.1
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 3.9e-10 67.8 53 66.0
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 5.1e-10 67.4 58 58.6
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 5.1e-10 67.4 57 63.2
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 5.1e-10 67.4 60 58.3
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 5.1e-10 67.4 53 66.0
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 6.7e-10 67.0 60 60.0
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 8.8e-10 66.6 60 63.3
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 8.8e-10 66.6 60 58.3
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.1e-09 66.2 66 56.1
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.1e-09 66.2 61 62.3
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 1.1e-09 66.2 61 62.3
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 1.1e-09 66.2 63 57.1
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.5e-09 65.9 57 63.2
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.5e-09 65.9 57 63.2
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.0e-09 65.5 57 63.2
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 2.0e-09 65.5 58 60.3
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 2.5e-09 65.1 55 63.6
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 2.5e-09 65.1 57 63.2
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 3.3e-09 64.7 60 58.3
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 3.3e-09 64.7 58 60.3
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 4.3e-09 64.3 59 59.3
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 7.4e-09 63.5 60 56.7
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 9.7e-09 63.2 57 59.6
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 9.7e-09 63.2 58 58.6
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 1.7e-08 62.4 61 60.7
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.7e-08 62.4 60 56.7
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 2.2e-08 62.0 50 64.0
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 2.2e-08 62.0 66 53.0
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 2.2e-08 62.0 58 58.6
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 2.8e-08 61.6 72 50.0
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 2.8e-08 61.6 58 58.6
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 3.7e-08 61.2 64 53.1
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 3.7e-08 61.2 72 51.4
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 3.7e-08 61.2 36 77.8
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 3.7e-08 61.2 36 77.8
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 3.7e-08 61.2 36 77.8
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 3.7e-08 61.2 57 54.4
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 3.7e-08 61.2 57 59.6
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 3.7e-08 61.2 61 57.4
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 4.8e-08 60.8 64 51.6
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 4.8e-08 60.8 55 54.5
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 6.3e-08 60.5 36 77.8
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 6.3e-08 60.5 36 77.8
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 6.3e-08 60.5 57 57.9
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 6.3e-08 60.5 72 51.4
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 6.3e-08 60.5 56 64.3
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 6.3e-08 60.5 52 55.8
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 8.2e-08 60.1 36 77.8
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 8.2e-08 60.1 36 77.8
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 8.2e-08 60.1 66 50.0
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 1.1e-07 59.7 36 77.8
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.1e-07 59.7 36 77.8
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 1.1e-07 59.7 58 56.9
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 1.1e-07 59.7 36 77.8
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.1e-07 59.7 36 77.8
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.1e-07 59.7 50 64.0
Eucgr.C00183 Eucalyptus grandis HOM05D004051 ORTHO05D004480 1.8e-07 58.9 60 55.0
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.8e-07 58.9 66 51.5
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 1.8e-07 58.9 59 52.5
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.8e-07 58.9 60 50.0
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 2.4e-07 58.5 57 56.1
BcaC03g18002 Brassica carinata HOM05D016815 ORTHO05D020093 3.1e-07 58.2 50 60.0
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 3.1e-07 58.2 54 63.0
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 3.1e-07 58.2 55 52.7
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 3.1e-07 58.2 36 75.0
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 3.1e-07 58.2 54 55.6
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 4.1e-07 57.8 53 64.2
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 4.1e-07 57.8 53 64.2
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 4.1e-07 57.8 49 63.3
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 4.1e-07 57.8 45 60.0
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 4.1e-07 57.8 63 54.0
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 4.1e-07 57.8 63 54.0
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 4.1e-07 57.8 58 56.9
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 5.3e-07 57.4 47 66.0
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.3e-07 57.4 58 56.9
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.3e-07 57.4 61 55.7
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 6.9e-07 57.0 57 56.1
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 9.1e-07 56.6 58 55.2
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 1.2e-06 56.2 55 50.9
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.2e-06 56.2 60 56.7
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 1.2e-06 56.2 60 55.0
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 1.5e-06 55.8 40 65.0
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 1.5e-06 55.8 66 43.9
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.5e-06 55.8 36 66.7
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.5e-06 55.8 57 56.1
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.5e-06 55.8 52 59.6
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 2.0e-06 55.5 36 66.7
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 2.0e-06 55.5 41 63.4
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.0e-06 55.5 63 50.8
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 2.0e-06 55.5 47 66.0
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 2.6e-06 55.1 45 60.0
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 2.6e-06 55.1 53 52.8
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 2.6e-06 55.1 58 55.2
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.6e-06 55.1 58 55.2
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 2.6e-06 55.1 57 50.9
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 2.6e-06 55.1 56 55.4
Aqoxy7G00101 Aquilegia oxysepala HOM05D002868 ORTHO05D023304 3.4e-06 54.7 54 55.6
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 5.9e-06 53.9 58 46.6
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 5.9e-06 53.9 58 46.6
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 7.7e-06 53.5 33 69.7


User provided reference genes

Program Settings