Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A165T43 Lonicera japonica HOM05D006022 ORTHO05D007649 0.0e+00 2615.9 1343 100.0
Dinv38822 Davidia involucrata HOM05D006022 ORTHO05D007406 0.0e+00 1222.6 1513 52.9
Cfa011987 Carpinus fangiana HOM05D006022 ORTHO05D007649 0.0e+00 1144.0 1421 52.2
vmacro11345 Vaccinium macrocarpon HOM05D006022 ORTHO05D007649 0.0e+00 1140.9 1407 52.0
Rhsim02G0245100 Rhododendron simsii HOM05D006022 ORTHO05D007649 0.0e+00 1121.7 1398 51.6
Haze_09085 Corylus avellana HOM05D006022 ORTHO05D007649 0.0e+00 1113.2 1510 49.1
RhsimUnG0007600 Rhododendron simsii HOM05D006022 ORTHO05D007649 0.0e+00 1104.7 1419 50.7
QL02p030100 Quercus lobata HOM05D006022 ORTHO05D007649 0.0e+00 1093.6 1461 49.1
Actinidia22171 Actinidia chinensis HOM05D006022 ORTHO05D007649 0.0e+00 1093.2 1431 50.2
GSVIVG01019556001 Vitis vinifera HOM05D006022 ORTHO05D007649 0.0e+00 1084.3 1384 51.4
CiPaw.12G081600 Carya illinoinensis HOM05D006022 ORTHO05D007649 1.9e-307 1059.7 1422 48.9
Cc08_g16230 Coffea canephora HOM05D006022 ORTHO05D007649 2.1e-306 1056.2 1420 49.6
Hma1.2p1_0359F.1_g135140 Hydrangea macrophylla HOM05D006022 ORTHO05D007649 2.3e-305 1052.7 1259 54.2
Potri.001G089900 Populus trichocarpa HOM05D006022 ORTHO05D007649 1.6e-301 1040.0 1416 49.7
Thecc.03G300300 Theobroma cacao HOM05D006022 ORTHO05D007649 1.7e-300 1036.6 1446 48.7
Sabra01G0066300 Salix brachista HOM05D006022 ORTHO05D007649 5.7e-296 1021.5 1429 48.7
Prupe.5G122300 Prunus persica HOM05D006022 ORTHO05D007649 9.7e-296 1020.8 1461 47.2
Manes.01G050200 Manihot esculenta HOM05D006022 ORTHO05D007649 9.1e-294 1014.2 1409 47.4
MD06G1109300 Malus domestica HOM05D006022 ORTHO05D007649 2.2e-292 1009.6 1451 47.6
Ciclev10018527m.g Citrus clementina HOM05D006022 ORTHO05D007649 2.7e-290 1002.7 1408 48.3
MD14G1130300 Malus domestica HOM05D006022 ORTHO05D007649 1.0e-289 1000.7 1430 47.6
Gohir.A08G112400 Gossypium hirsutum HOM05D006022 ORTHO05D007649 1.2e-285 987.3 1411 48.2
Sopen12g024380 Solanum pennellii HOM05D006022 ORTHO05D007649 7.7e-285 984.6 1391 47.2
Gorai.004G132300 Gossypium raimondii HOM05D006022 ORTHO05D007649 1.7e-284 983.4 1426 47.5
CANSAT21G0687 Cannabis sativa HOM05D006022 ORTHO05D007649 8.6e-284 981.1 1398 47.6
CAN.G390.10 Capsicum annuum HOM05D006022 ORTHO05D007649 4.2e-283 978.8 1388 47.5
RcHm_v2.0_Chr7g0194241 Rosa chinensis HOM05D006022 ORTHO05D007649 7.2e-283 978.0 1437 46.6
Gohir.D08G125400 Gossypium hirsutum HOM05D006022 ORTHO05D007649 2.8e-282 976.1 1426 46.9
Nn1g00246 Nelumbo nucifera HOM05D006022 ORTHO05D007649 6.1e-282 974.9 1503 45.2
Peaxi162Scf00117g00919 Petunia axillaris HOM05D006022 ORTHO05D007649 8.0e-282 974.5 1397 47.5
TWI81G0375 Tripterygium wilfordii HOM05D006022 ORTHO05D007649 1.5e-280 970.3 1468 44.6
FvH4_5g04850 Fragaria vesca HOM05D006022 ORTHO05D007649 2.7e-277 959.5 1442 45.6
Nitab4.5_0004010g0010 Nicotiana tabacum HOM05D006022 ORTHO05D007649 1.0e-276 957.6 1415 47.3
FAN18G3678 Fragaria x ananassa HOM05D006022 ORTHO05D007649 2.3e-276 956.4 1437 45.8
FAN18G0793 Fragaria x ananassa HOM05D006022 ORTHO05D007649 6.6e-276 954.9 1439 45.4
Solyc12g055910.3 Solanum lycopersicum HOM05D006022 ORTHO05D007649 1.2e-274 950.7 1369 47.2
MSTRG.1801 Avicennia marina HOM05D006022 ORTHO05D007649 2.8e-274 949.5 1418 46.0
FAN04G2854 Fragaria x ananassa HOM05D006022 ORTHO05D007649 1.8e-273 946.8 1440 45.2
Atru.chr9.1963 Acer truncatum HOM05D006022 ORTHO05D007649 2.9e-271 939.5 1332 48.0
CSS0021468 Camellia sinensis var. sinensis HOM05D006022 ORTHO05D007649 3.5e-269 932.6 1145 52.2
PGR042G3794 Punica granatum HOM05D006022 ORTHO05D007649 4.9e-263 912.1 1398 45.3
ECA233G0648 Erigeron canadensis HOM05D006022 ORTHO05D007649 6.4e-263 911.8 1337 46.5
Duzib084G0652 Durio zibethinus HOM05D006022 ORTHO05D007649 1.0e-260 904.4 1393 46.2
TAR375G1078 Trochodendron aralioides HOM05D006022 ORTHO05D007649 7.3e-259 898.3 1442 44.9
HanXRQChr10g0316931 Helianthus annuus HOM05D006022 ORTHO05D007649 6.2e-258 895.2 1344 45.9
Glyma.08G023800 Glycine max HOM05D006022 ORTHO05D007649 1.4e-254 884.0 1433 44.3
Aqoxy5G04291 Aquilegia oxysepala HOM05D006022 ORTHO05D007649 1.9e-254 883.6 1468 43.1
MBI07_g39841_MAGBIO Magnolia biondii HOM05D006022 ORTHO05D007649 4.1e-254 882.5 1519 43.0
arahy.Tifrunner.gnm1.ann1.MN1JRI Arachis hypogaea HOM05D006022 ORTHO05D007649 3.5e-253 879.4 1413 43.8
Sed0008879 Sechium edule HOM05D006022 ORTHO05D007649 1.6e-250 870.5 1404 45.3
Lj4g0024036 Lotus japonicus HOM05D006022 ORTHO05D007649 4.0e-249 865.9 1365 44.2
Medtr8g099585 Medicago truncatula HOM05D006022 ORTHO05D007649 4.0e-249 865.9 1411 43.9
Lsat_1_v5_gn_6_8380 Lactuca sativa HOM05D006022 ORTHO05D007649 3.4e-248 862.8 1379 44.0
COL.COLO4_10720 Corchorus olitorius HOM05D006022 ORTHO05D007649 7.6e-248 861.7 1429 44.4
VMungo0251G1998 Vigna mungo HOM05D006022 ORTHO05D007649 3.8e-247 859.4 1419 43.9
MELO3C005765.2 Cucumis melo HOM05D006022 ORTHO05D007649 3.2e-246 856.3 1417 44.3
Ca_17472_v3 Cicer arietinum L. HOM05D006022 ORTHO05D007649 1.6e-242 844.0 1429 43.4
Psat7g023280 Pisum sativum HOM05D006022 ORTHO05D007649 2.8e-242 843.2 1417 42.6
Migut.E01259 Erythranthe guttata HOM05D006022 ORTHO05D007649 3.1e-241 839.7 1381 43.6
CsaV3_5G001870 Cucumis sativus L. HOM05D006022 ORTHO05D007649 3.4e-240 836.3 1414 44.1
Lalb_Chr05g0224031 Lupinus albus HOM05D006022 ORTHO05D007649 4.4e-240 835.9 1427 43.2
Hund14211 Selenicereus undatus HOM05D006022 ORTHO05D007649 3.2e-238 829.7 1393 43.8
EL10Ac5g12933 Beta vulgaris HOM05D006022 ORTHO05D007649 3.1e-233 813.1 1398 42.8
arahy.Tifrunner.gnm1.ann1.DK6PZW Arachis hypogaea HOM05D006022 ORTHO05D007649 4.5e-232 809.3 1403 41.8
THA.LOC104807002 Tarenaya hassleriana HOM05D006022 ORTHO05D007649 1.1e-230 804.7 1381 41.4
AUR62010858 Chenopodium quinoa HOM05D006022 ORTHO05D007649 4.2e-230 802.7 1394 42.5
Glyma.05G217800 Glycine max HOM05D006022 ORTHO05D007649 5.4e-230 802.4 1306 44.3
PSO170G1024 Papaver somniferum HOM05D006022 ORTHO05D007649 2.7e-229 800.0 1396 42.3
Phvul.002G299600 Phaseolus vulgaris HOM05D006022 ORTHO05D007649 2.5e-227 793.5 1293 44.3
DCAR_029909 Daucus carota HOM05D006022 ORTHO05D007649 9.6e-227 791.6 1144 48.6
Nitab4.5_0004515g0030 Nicotiana tabacum HOM05D006022 ORTHO05D007649 5.8e-216 755.7 1126 48.1
SGA_v2.0_scaffold111G31401 Striga asiatica HOM05D006022 ORTHO05D007649 4.6e-213 746.1 1232 44.4
AUR62019856 Chenopodium quinoa HOM05D006022 ORTHO05D007649 1.9e-211 740.7 1373 41.5
ClCG01G001730 Citrullus lanatus HOM05D006022 ORTHO05D007649 3.3e-211 740.0 1234 45.4
AT4G10930 Arabidopsis thaliana HOM05D006022 ORTHO05D007649 4.1e-209 733.0 1411 39.4
Sp6g06550 Schrenkiella parvula HOM05D006022 ORTHO05D007649 6.1e-205 719.2 1377 39.5
AL6G45030 Arabidopsis lyrata HOM05D006022 ORTHO05D007649 4.3e-203 713.0 1406 38.7
Ah.07g197550 Amaranthus hybridus HOM05D006022 ORTHO05D007649 2.8e-202 710.3 1506 38.2
Cpa.g.sc79.13 Carica papaya HOM05D006022 ORTHO05D007649 3.1e-201 706.8 1024 48.0
BolC3t15840H Brassica oleracea HOM05D006022 ORTHO05D007649 5.3e-201 706.1 1384 38.4
BcaB01g02727 Brassica carinata HOM05D006022 ORTHO05D007649 1.2e-200 704.9 1369 38.7
BraA03t12116Z Brassica rapa HOM05D006022 ORTHO05D007649 5.0e-199 699.5 1376 38.2
BcaC01g04650 Brassica carinata HOM05D006022 ORTHO05D007649 6.5e-199 699.1 1383 38.4
C03p35290 Brassica napus HOM05D006022 ORTHO05D007649 2.5e-198 697.2 1381 38.2
A03p29210 Brassica napus HOM05D006022 ORTHO05D007649 9.4e-198 695.3 1375 38.2
unitig_26.g9566 Utricularia gibba HOM05D006022 ORTHO05D007649 2.1e-197 694.1 1374 38.9
Carub.0006s2968 Capsella rubella HOM05D006022 ORTHO05D007649 4.4e-195 686.4 1437 37.6
ATR0602G083 Amborella trichopoda HOM05D006022 ORTHO05D007649 1.2e-189 668.3 1432 38.0
TPR.G3389 Trifolium pratense HOM05D006022 ORTHO05D007649 1.4e-185 654.8 1250 40.6
CARHR255670 Cardamine hirsuta HOM05D006022 ORTHO05D007649 5.9e-160 569.7 1130 40.0
Eucgr.E00880 Eucalyptus grandis HOM05D006022 ORTHO05D007649 3.9e-159 567.0 903 45.4
Thhalv10028398m.g Eutrema salsugineum HOM05D006022 ORTHO05D007649 1.2e-155 555.4 1121 38.8
Sc22g0004930 Simmondsia chinensis HOM05D006022 ORTHO05D007649 3.6e-149 533.9 938 41.3
Zm00001eb209080 Zea mays HOM05D006022 ORTHO05D007649 5.4e-137 493.4 1412 32.0
SEGI_16880 Sequoiadendron giganteum HOM05D006022 ORTHO05D007649 4.5e-99 367.5 1160 31.6
Oeu023154.1 Olea europaea HOM05D006022 ORTHO05D007649 2.7e-96 358.2 440 52.0
Duzib205G1781 Durio zibethinus HOM05D006022 ORTHO05D007649 5.7e-94 350.5 499 47.7
Oeu009974.1 Olea europaea HOM05D006022 ORTHO05D007649 2.0e-83 315.5 502 43.6
HPP92_009829 Vanilla planifolia HOM05D006022 ORTHO05D007649 2.6e-83 315.1 1074 30.9
Oeu009975.1 Olea europaea HOM05D006022 ORTHO05D007649 7.0e-76 290.4 392 48.2
Sc22g0004920 Simmondsia chinensis HOM05D006022 ORTHO05D007649 3.2e-73 281.6 414 45.7
Pp3c6_15100 Physcomitrium patens HOM05D006022 ORTHO05D007649 9.4e-65 253.4 1531 25.8
SHI06973 Sapria himalayana HOM05D006022 ORTHO05D007649 1.0e-58 233.4 383 44.4
Os12g0209700 Oryza sativa ssp. japonica HOM05D006022 ORTHO05D007649 8.0e-56 223.8 641 32.8
Hund11381 Selenicereus undatus HOM05D006022 ORTHO05D007649 1.1e-52 213.4 359 39.0
Ah.12g052650 Amaranthus hybridus HOM05D006022 ORTHO05D007649 2.1e-48 199.1 219 50.2
Mapoly0002s0107 Marchantia polymorpha HOM05D006022 ORTHO05D007649 3.0e-47 195.3 1605 23.4
TPR.G40773 Trifolium pratense HOM05D006022 ORTHO05D007649 6.8e-47 194.1 310 42.9
SMO364G0157 Selaginella moellendorffii HOM05D003349 ORTHO05D003898 7.5e-38 164.1 1225 24.2
TPR.G5178 Trifolium pratense HOM05D006022 ORTHO05D007649 6.4e-37 161.0 188 47.3
Cpa.g.sc571.3 Carica papaya HOM05D006022 ORTHO05D007649 4.0e-31 141.7 93 67.7
Psat4g095080 Pisum sativum HOM05D006022 ORTHO05D007649 3.7e-29 135.2 188 43.6
Nitab4.5_0004515g0060 Nicotiana tabacum HOM05D006022 ORTHO05D007649 2.7e-27 129.0 78 79.5
AagrBONN_evm.TU.Sc2ySwM_228.3550 Anthoceros agrestis HOM05D006022 ORTHO05D007649 5.2e-23 114.8 186 38.2
Actinidia11683 Actinidia chinensis HOM05D006022 ORTHO05D007649 8.9e-23 114.0 122 53.3
SHI06968 Sapria himalayana HOM05D006022 ORTHO05D007649 1.2e-22 113.6 74 68.9
BcaB04g17245 Brassica carinata HOM05D006022 ORTHO05D007649 2.9e-21 109.0 69 66.7
MD12G1080900 Malus domestica HOM05D006022 ORTHO05D007649 2.1e-19 102.8 54 79.6
CBR_g31499 Chara braunii HOM05D006022 ORTHO05D007649 7.3e-17 94.4 203 31.0
TWI60G1065 Tripterygium wilfordii HOM05D006022 ORTHO05D007649 2.3e-10 72.8 116 36.2
SGA_v2.0_scaffold130G34351 Striga asiatica HOM05D006022 ORTHO05D007649 3.9e-10 72.0 117 41.9
SHI06971 Sapria himalayana HOM05D006022 ORTHO05D007649 4.0e-07 62.0 37 81.1
SGA_v2.0_scaffold169G38721 Striga asiatica HOM05D002942 ORTHO05D003270 4.0e-07 62.0 117 37.6
Lalb_Chr06g0167561 Lupinus albus HOM05D002798 ORTHO05D003052 9.0e-07 60.8 53 50.9
PSO357G0121 Papaver somniferum HOM05D002798 ORTHO05D003052 1.5e-06 60.1 88 38.6
Lalb_Chr15g0077581 Lupinus albus HOM05D002798 ORTHO05D003052 2.6e-06 59.3 53 49.1
HanXRQChr15g0466321 Helianthus annuus HOM05D002798 ORTHO05D003052 3.4e-06 58.9 80 38.8
SGA_v2.0_scaffold49G18107 Striga asiatica HOM05D006022 ORTHO05D007649 3.4e-06 58.9 115 36.5
Cfa006676 Carpinus fangiana HOM05D002798 ORTHO05D003052 4.4e-06 58.5 53 49.1
PSO170G2184 Papaver somniferum HOM05D002798 ORTHO05D003052 4.4e-06 58.5 88 37.5
SMO347G0659 Selaginella moellendorffii HOM05D002798 ORTHO05D003052 4.4e-06 58.5 70 37.1
Os03g0302200 Oryza sativa ssp. japonica HOM05D002798 ORTHO05D003052 5.8e-06 58.2 53 49.1
SGA_v2.0_scaffold408G51088 Striga asiatica HOM05D006022 ORTHO05D007649 5.8e-06 58.2 117 34.2


User provided reference genes

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