Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 3.5e-118 428.3 221 100.0
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 6.5e-64 248.1 221 63.8
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 8.0e-62 241.1 196 65.3
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.7e-61 238.0 222 64.0
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 5.7e-60 235.0 221 61.1
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 2.8e-59 232.6 216 60.2
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 4.8e-59 231.9 190 63.7
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 6.3e-59 231.5 190 63.7
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 6.3e-59 231.5 190 63.7
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 8.2e-59 231.1 222 62.2
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 1.4e-58 230.3 229 60.7
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 1.8e-58 229.9 200 66.5
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 2.4e-58 229.6 223 60.1
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 4.1e-58 228.8 221 61.1
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 7.0e-58 228.0 222 59.9
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 1.2e-57 227.3 221 59.3
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 2.0e-57 226.5 195 62.1
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 2.7e-57 226.1 195 62.6
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 2.7e-57 226.1 157 72.0
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 3.5e-57 225.7 193 61.7
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 4.5e-57 225.3 194 61.3
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 4.5e-57 225.3 225 60.0
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 4.5e-57 225.3 213 61.5
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 7.7e-57 224.6 222 59.5
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 1.0e-56 224.2 188 61.7
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.0e-56 224.2 219 60.7
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.3e-56 223.8 193 62.7
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 1.3e-56 223.8 220 60.9
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 1.7e-56 223.4 193 62.7
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 1.7e-56 223.4 211 57.8
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 2.2e-56 223.0 213 59.6
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 2.2e-56 223.0 188 62.2
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 2.2e-56 223.0 193 60.6
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 2.2e-56 223.0 225 58.2
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 2.9e-56 222.6 213 57.3
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 2.9e-56 222.6 188 61.7
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 3.8e-56 222.2 156 71.2
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 5.0e-56 221.9 217 56.2
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 5.0e-56 221.9 156 72.4
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 5.0e-56 221.9 176 66.5
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 5.0e-56 221.9 224 58.0
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 5.0e-56 221.9 222 59.5
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 6.5e-56 221.5 191 62.8
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 6.5e-56 221.5 194 62.9
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 8.5e-56 221.1 223 58.3
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.1e-55 220.7 220 55.9
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 1.1e-55 220.7 194 60.8
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 1.1e-55 220.7 194 60.8
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 1.1e-55 220.7 194 60.8
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 1.1e-55 220.7 200 61.0
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.9e-55 219.9 194 60.8
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.9e-55 219.9 203 61.1
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 2.5e-55 219.5 222 58.6
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 2.5e-55 219.5 221 58.4
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 3.2e-55 219.2 221 59.7
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 4.2e-55 218.8 212 57.1
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 7.2e-55 218.0 221 59.7
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 9.4e-55 217.6 190 60.5
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 9.4e-55 217.6 157 71.3
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 9.4e-55 217.6 162 69.1
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 9.4e-55 217.6 203 60.1
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.6e-54 216.9 217 58.1
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 1.6e-54 216.9 188 63.3
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 2.1e-54 216.5 223 57.0
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 3.6e-54 215.7 191 60.2
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 3.6e-54 215.7 221 59.3
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 3.6e-54 215.7 213 58.7
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 3.6e-54 215.7 213 58.7
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 4.7e-54 215.3 222 56.3
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 4.7e-54 215.3 210 59.5
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 4.7e-54 215.3 157 68.8
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 6.1e-54 214.9 208 61.5
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 6.1e-54 214.9 156 70.5
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 6.1e-54 214.9 213 58.7
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 8.0e-54 214.5 186 60.8
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.0e-53 214.2 211 60.2
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.4e-53 213.8 208 61.1
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.4e-53 213.8 202 58.4
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 1.8e-53 213.4 210 59.0
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.8e-53 213.4 210 59.0
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.8e-53 213.4 210 59.0
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 1.8e-53 213.4 228 56.1
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.3e-53 213.0 222 57.7
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.0e-53 212.6 157 68.2
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 3.0e-53 212.6 218 58.3
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 3.0e-53 212.6 224 56.7
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 4.0e-53 212.2 221 58.8
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 4.0e-53 212.2 219 58.4
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 4.0e-53 212.2 209 58.9
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 5.2e-53 211.8 227 56.8
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.8e-53 211.5 210 59.0
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 1.2e-52 210.7 213 57.3
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 2.0e-52 209.9 221 57.5
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 5.7e-52 208.4 217 57.1
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 9.8e-52 207.6 219 54.3
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.3e-51 207.2 221 55.7
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.2e-51 206.5 210 57.6
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 4.8e-51 205.3 227 53.7
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 6.3e-51 204.9 199 57.3
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 8.3e-51 204.5 222 56.8
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 1.1e-50 204.1 119 81.5
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 3.1e-50 202.6 220 55.0
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 3.1e-50 202.6 162 64.2
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 3.1e-50 202.6 157 66.2
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 5.4e-50 201.8 190 60.5
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 2.7e-49 199.5 182 58.8
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 2.7e-49 199.5 277 46.9
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.7e-48 196.8 231 55.4
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 8.5e-48 194.5 198 55.1
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.5e-47 193.7 198 55.1
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 3.6e-46 189.1 154 63.0
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 8.0e-46 188.0 212 53.3
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 1.4e-45 187.2 223 51.6
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 2.3e-45 186.4 156 61.5
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.2e-44 184.1 221 53.4
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 3.4e-44 182.6 165 61.8
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 1.1e-42 177.6 152 61.2
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 4.1e-42 175.6 238 48.3
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.6e-41 173.7 218 49.1
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 2.7e-41 172.9 216 49.1
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.5e-41 172.2 218 48.6
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 1.0e-40 171.0 102 81.4
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 1.7e-40 170.2 189 52.9
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 5.0e-40 168.7 118 70.3
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 3.3e-39 166.0 315 39.0
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 1.8e-37 160.2 222 46.8
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 4.1e-34 149.1 180 54.4
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 7.0e-34 148.3 93 75.3
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 4.6e-33 145.6 133 51.1
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 5.9e-33 145.2 116 56.0
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 7.8e-33 144.8 140 50.0
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.3e-32 143.3 116 54.3
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 2.8e-30 136.3 106 54.7
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 8.0e-30 134.8 230 43.9
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.0e-29 134.4 81 80.2
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 1.4e-29 134.0 112 53.6
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 1.2e-25 120.9 193 42.0
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 3.0e-24 116.3 80 70.0
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.1e-22 110.2 67 74.6
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.1e-22 110.2 67 74.6
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 7.8e-17 91.7 144 46.5
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 2.5e-15 86.7 64 67.2
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 3.8e-11 72.8 50 64.0
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 6.4e-11 72.0 148 40.5
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 2.5e-07 60.1 121 34.7


User provided reference genes

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