Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 5.5e-219 764.2 449 100.0
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 1.0e-116 424.5 461 61.6
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 4.2e-102 375.9 479 54.7
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 7.9e-101 371.7 469 55.4
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 7.4e-99 365.2 470 60.0
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 5.3e-97 359.0 409 54.5
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 1.8e-89 334.0 413 51.8
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 3.1e-89 333.2 484 51.9
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 3.1e-89 333.2 486 51.4
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 7.0e-89 332.0 477 53.7
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 1.2e-88 331.3 386 53.6
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 5.5e-86 322.4 409 50.6
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 6.1e-85 318.9 489 47.6
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 3.4e-83 313.2 413 49.2
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 9.7e-83 311.6 419 48.2
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 1.3e-82 311.2 416 51.0
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 1.1e-81 308.1 417 48.0
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 1.4e-81 307.8 415 47.2
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 7.0e-81 305.4 508 43.3
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 7.0e-81 305.4 421 47.0
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 1.2e-80 304.7 452 46.9
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 2.0e-80 303.9 419 46.5
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 7.7e-80 302.0 517 47.2
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 2.1e-77 293.9 428 46.0
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 2.1e-77 293.9 454 44.9
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 8.8e-76 288.5 414 47.6
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 7.5e-75 285.4 424 45.0
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 2.2e-74 283.9 423 45.4
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 3.7e-74 283.1 410 47.6
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 1.1e-73 281.6 418 45.7
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 1.8e-73 280.8 421 45.1
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 2.4e-73 280.4 411 45.7
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 2.4e-73 280.4 397 46.3
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 5.4e-73 279.3 551 41.9
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 1.6e-72 277.7 421 45.1
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 2.0e-72 277.3 401 47.9
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 2.0e-72 277.3 401 47.9
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 3.5e-72 276.6 411 45.3
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 4.5e-72 276.2 425 45.6
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 7.7e-72 275.4 410 45.1
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 1.0e-71 275.0 473 44.8
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 6.6e-71 272.3 415 44.6
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 3.3e-70 270.0 429 42.4
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 2.1e-69 267.3 420 43.6
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 2.1e-69 267.3 384 45.6
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 3.6e-69 266.5 411 44.0
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.0e-68 265.0 385 47.8
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 8.9e-68 261.9 424 41.0
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 1.2e-67 261.5 398 44.2
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 2.0e-67 260.8 308 51.6
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 2.6e-67 260.4 412 43.2
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 3.4e-67 260.0 368 46.7
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 1.3e-66 258.1 467 43.9
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 1.7e-66 257.7 400 42.8
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 2.8e-66 256.9 404 42.1
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 3.7e-66 256.5 400 42.8
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 3.7e-66 256.5 464 45.5
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 4.9e-66 256.1 419 43.0
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 6.3e-66 255.8 400 42.5
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 6.3e-66 255.8 430 42.1
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 1.1e-65 255.0 417 42.4
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 1.1e-65 255.0 402 45.5
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 1.1e-65 255.0 463 42.8
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 1.4e-65 254.6 404 41.8
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.4e-65 254.6 471 43.7
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.4e-65 253.8 469 44.8
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 5.4e-65 252.7 406 41.1
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 5.4e-65 252.7 427 41.0
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 7.0e-65 252.3 421 41.1
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 9.2e-65 251.9 365 45.8
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 1.2e-64 251.5 404 41.8
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 1.2e-64 251.5 361 46.5
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 2.0e-64 250.8 404 41.6
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 2.0e-64 250.8 398 45.2
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 4.5e-64 249.6 416 41.8
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 7.8e-64 248.8 406 43.6
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.0e-63 248.4 469 43.7
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.3e-63 248.1 407 41.5
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 1.7e-63 247.7 416 41.6
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 1.7e-63 247.7 407 43.2
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.3e-63 247.3 471 43.5
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 2.9e-63 246.9 402 44.8
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 1.5e-62 244.6 400 40.5
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.5e-62 244.6 405 42.2
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.5e-62 244.6 405 40.5
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 3.3e-62 243.4 400 41.0
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 7.3e-62 242.3 579 35.2
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 1.6e-61 241.1 365 44.1
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 2.1e-61 240.7 416 41.1
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 2.8e-61 240.4 410 42.7
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.3e-60 237.3 453 43.5
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 2.3e-60 237.3 385 41.8
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 6.8e-60 235.7 410 41.5
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.5e-59 234.6 413 41.4
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 2.0e-59 234.2 412 40.0
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 7.5e-59 232.3 262 52.7
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 7.5e-59 232.3 201 65.7
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 9.8e-59 231.9 426 39.2
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 1.7e-58 231.1 403 40.9
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 2.9e-58 230.3 380 43.9
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 4.9e-58 229.6 409 40.1
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 6.4e-58 229.2 401 42.1
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 6.4e-58 229.2 402 41.5
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 1.1e-57 228.4 401 42.4
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 1.9e-57 227.6 418 40.0
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 1.9e-57 227.6 424 39.4
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.4e-57 227.3 418 39.7
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 5.4e-57 226.1 411 41.8
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 7.8e-56 222.2 435 38.6
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 7.8e-56 222.2 414 38.4
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 1.0e-55 221.9 372 41.1
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 1.0e-55 221.9 318 46.2
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 1.3e-55 221.5 318 45.9
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 1.3e-55 221.5 427 38.6
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 3.9e-55 219.9 435 37.5
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 2.5e-54 217.2 389 41.1
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 5.6e-54 216.1 400 40.8
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 1.2e-53 214.9 410 38.0
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 1.6e-53 214.5 396 41.4
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 3.1e-52 210.3 366 39.9
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 4.0e-52 209.9 324 45.4
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 6.8e-52 209.1 369 44.2
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 1.3e-50 204.9 424 40.6
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 4.9e-50 203.0 210 55.7
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 5.4e-49 199.5 492 35.4
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 5.4e-49 199.5 492 35.4
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 1.0e-47 195.3 105 90.5
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 5.6e-46 189.5 286 45.1
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 1.4e-44 184.9 103 87.4
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 2.3e-44 184.1 208 54.8
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 8.9e-44 182.2 103 86.4
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 8.9e-44 182.2 103 86.4
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 8.9e-44 182.2 102 85.3
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.9e-38 164.5 95 83.2
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 1.6e-37 161.4 117 71.8
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 5.4e-33 146.4 78 91.0
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 6.0e-32 142.9 311 38.9
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 1.8e-28 131.3 103 57.3
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 2.4e-28 131.0 100 64.0
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 2.4e-28 131.0 326 35.0
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 1.2e-24 118.6 291 36.1
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 1.3e-23 115.2 64 85.9
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 3.0e-23 114.0 295 36.3
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 4.3e-22 110.2 106 53.8
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 9.0e-20 102.4 62 82.3
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 7.6e-19 99.4 248 33.9
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 3.8e-18 97.1 61 77.0
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 8.4e-18 95.9 100 52.0
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 2.4e-17 94.4 253 33.6
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 4.6e-16 90.1 100 47.0
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 2.3e-15 87.8 55 80.0
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 3.9e-15 87.0 92 53.3
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 8.7e-15 85.9 75 57.3
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 4.0e-12 77.0 35 100.0
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 3.4e-11 73.9 285 29.5
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 1.1e-09 68.9 67 56.7
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 4.2e-09 67.0 52 63.5
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 2.7e-08 64.3 73 50.7
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 4.6e-08 63.5 35 74.3
Ca_29111_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 3.9e-07 60.5 88 44.3
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 8.7e-07 59.3 118 31.4
Cre06.g264300 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 1.9e-06 58.2 90 40.0
EL10Ac4g08139 Beta vulgaris HOM05D003936 ORTHO05D004747 4.3e-06 57.0 41 58.5
EL10Ac4g08132 Beta vulgaris HOM05D003936 ORTHO05D004747 7.4e-06 56.2 38 63.2
EL10Ac4g09849 Beta vulgaris HOM05D003936 ORTHO05D004747 7.4e-06 56.2 38 63.2


User provided reference genes

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