Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 2.3e-165 585.5 294 100.0
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 2.9e-120 435.6 253 85.0
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 5.0e-120 434.9 252 84.5
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 6.5e-120 434.5 253 85.8
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 1.9e-119 433.0 253 85.0
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 2.5e-119 432.6 277 79.8
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 2.5e-119 432.6 277 79.8
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 5.5e-119 431.4 253 83.4
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 1.2e-118 430.3 253 84.2
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 1.6e-118 429.9 253 83.8
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 1.6e-118 429.9 275 78.5
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 3.6e-118 428.7 269 79.9
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 3.6e-118 428.7 269 79.9
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 4.7e-118 428.3 254 83.5
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 3.0e-117 425.6 253 83.0
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 4.0e-117 425.2 252 83.3
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 5.2e-117 424.9 253 83.4
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 6.8e-117 424.5 253 82.2
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 6.8e-117 424.5 275 78.2
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.5e-116 423.3 253 81.4
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 7.5e-116 421.0 255 82.4
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 9.8e-116 420.6 253 83.0
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.3e-115 420.2 250 83.6
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 1.3e-115 420.2 255 83.1
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 1.7e-115 419.9 253 81.0
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 1.7e-115 419.9 253 82.2
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 2.2e-115 419.5 253 81.4
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 3.7e-115 418.7 253 82.6
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 3.7e-115 418.7 252 81.7
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 4.8e-115 418.3 253 81.8
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 6.3e-115 417.9 253 81.4
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 1.4e-114 416.8 253 81.4
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 9.1e-114 414.1 253 82.2
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 9.1e-114 414.1 247 82.6
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 2.0e-113 412.9 250 81.6
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 2.0e-113 412.9 254 80.7
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 2.7e-113 412.5 247 82.6
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 2.7e-113 412.5 254 80.3
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 3.5e-113 412.1 260 78.8
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 4.5e-113 411.8 248 82.3
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 4.5e-113 411.8 254 81.5
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 4.5e-113 411.8 254 81.1
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 7.7e-113 411.0 253 80.6
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 7.7e-113 411.0 253 80.6
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 1.3e-112 410.2 248 81.5
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 1.7e-112 409.8 248 81.5
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 2.2e-112 409.5 252 81.3
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 3.8e-112 408.7 244 83.2
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 3.8e-112 408.7 253 79.8
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 5.0e-112 408.3 247 82.2
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 6.5e-112 407.9 253 79.4
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 6.5e-112 407.9 248 81.0
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 8.5e-112 407.5 251 79.7
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 8.5e-112 407.5 244 82.8
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 1.5e-111 406.8 247 81.0
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 1.9e-111 406.4 247 81.0
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 2.5e-111 406.0 282 72.3
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 3.2e-111 405.6 249 77.9
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 3.2e-111 405.6 253 77.5
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 5.5e-111 404.8 305 69.5
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 7.2e-111 404.4 250 79.6
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 7.2e-111 404.4 250 79.6
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 7.2e-111 404.4 247 80.6
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 9.4e-111 404.1 247 79.4
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 9.4e-111 404.1 259 78.4
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 1.2e-110 403.7 253 79.4
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 1.2e-110 403.7 253 79.1
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 1.2e-110 403.7 253 79.4
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 1.6e-110 403.3 250 79.6
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 2.1e-110 402.9 244 82.0
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 3.6e-110 402.1 287 71.4
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 4.7e-110 401.7 313 68.1
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 6.1e-110 401.4 248 79.4
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 6.1e-110 401.4 247 79.8
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 8.0e-110 401.0 233 83.3
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.4e-109 400.2 275 73.1
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 4.0e-109 398.7 248 79.8
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 6.8e-109 397.9 250 78.4
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 6.8e-109 397.9 248 79.0
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 6.8e-109 397.9 248 79.0
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 1.5e-108 396.7 247 79.4
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 3.4e-108 395.6 247 78.1
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 3.4e-108 395.6 248 78.6
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 3.4e-108 395.6 248 78.6
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 3.4e-108 395.6 250 78.4
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 9.8e-108 394.0 248 78.6
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 1.3e-107 393.7 251 78.1
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.7e-107 393.3 294 69.4
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 1.4e-106 390.2 252 77.4
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 7.0e-106 387.9 248 78.2
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 1.2e-105 387.1 247 76.9
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 6.6e-104 381.3 250 77.2
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 1.1e-103 380.6 254 75.2
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 9.5e-103 377.5 248 74.2
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 2.1e-102 376.3 244 77.9
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.4e-101 373.6 228 80.3
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 4.4e-100 368.6 306 64.1
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 3.7e-99 365.5 247 71.7
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 4.9e-99 365.2 248 71.8
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 5.9e-97 358.2 231 77.9
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 6.6e-96 354.8 247 71.3
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 4.3e-95 352.1 253 71.9
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 1.6e-94 350.1 236 75.0
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 2.8e-94 349.4 253 71.5
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 4.7e-94 348.6 252 67.9
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 2.2e-91 339.7 253 70.0
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 1.4e-90 337.0 255 65.9
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 1.4e-90 337.0 197 83.8
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 3.2e-90 335.9 195 84.6
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 2.0e-89 333.2 266 66.2
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 4.6e-89 332.0 249 67.1
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 1.0e-88 330.9 233 73.8
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 6.2e-86 321.6 248 64.5
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 9.8e-84 314.3 193 81.9
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.1e-82 310.8 242 66.9
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 1.9e-82 310.1 174 86.2
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 5.1e-80 302.0 300 54.3
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 5.6e-79 298.5 251 63.7
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 2.1e-78 296.6 257 59.1
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 3.6e-78 295.8 253 63.6
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 1.8e-77 293.5 178 82.6
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 1.3e-75 287.3 231 67.5
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 1.7e-75 287.0 177 79.1
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 8.4e-75 284.6 183 75.4
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.7e-72 276.9 193 72.0
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 2.1e-70 270.0 259 57.1
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 8.4e-67 258.1 154 80.5
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 9.3e-66 254.6 182 73.1
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 3.9e-64 249.2 174 71.8
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 1.6e-62 243.8 145 81.4
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 2.1e-54 216.9 162 69.1
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 3.4e-52 209.5 168 66.1
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 3.4e-52 209.5 150 72.0
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 2.2e-51 206.8 117 85.5
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 2.2e-51 206.8 253 45.1
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 1.1e-50 204.5 115 86.1
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 1.1e-50 204.5 115 86.1
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 7.1e-50 201.8 117 83.8
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 5.1e-40 169.1 108 76.9
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 8.2e-38 161.8 99 82.8
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.2e-36 157.9 143 56.6
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 5.5e-34 149.1 157 51.0
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 2.7e-33 146.7 125 53.6
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 1.1e-31 141.4 88 76.1
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.2e-30 137.1 115 60.9
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.4e-29 134.4 99 69.7
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 2.6e-28 130.2 77 84.4
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 1.0e-27 128.3 249 35.7
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 1.5e-23 114.4 70 80.0
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 2.0e-23 114.0 71 76.1
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 9.7e-23 111.7 70 80.0
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 1.3e-22 111.3 177 39.5
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 1.1e-21 108.2 70 75.7
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.2e-19 100.5 69 68.1
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 5.5e-18 95.9 93 60.2
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 1.0e-16 91.7 53 81.1
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 1.0e-16 91.7 53 81.1
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 6.3e-14 82.4 52 78.8
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 1.4e-13 81.3 46 82.6
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 2.2e-11 73.9 67 64.2
SEGI_40272 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 9.7e-07 58.5 34 76.5


User provided reference genes

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