Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A1205T44 Lonicera japonica HOM05D000361 ORTHO05D004243 0.0e+00 1532.3 790 100.0
Actinidia20995 Actinidia chinensis HOM05D000361 ORTHO05D004243 4.5e-232 808.5 790 61.0
Hma1.2p1_0486F.1_g163260 Hydrangea macrophylla HOM05D000361 ORTHO05D004243 5.7e-227 791.6 789 60.6
Actinidia25847 Actinidia chinensis HOM05D000361 ORTHO05D004243 4.8e-226 788.5 790 61.0
Rhsim01G0290600 Rhododendron simsii HOM05D000361 ORTHO05D004243 1.1e-225 787.3 790 60.0
Dinv33114 Davidia involucrata HOM05D000361 ORTHO05D004243 9.3e-222 774.2 789 60.1
CSS0012467 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 3.5e-221 772.3 791 59.7
GSVIVG01028119001 Vitis vinifera HOM05D000361 ORTHO05D004243 2.3e-220 769.6 791 59.0
Thecc.01G313200 Theobroma cacao HOM05D000361 ORTHO05D004243 4.1e-217 758.8 790 58.7
CSS0010179 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 6.9e-217 758.1 790 58.9
vmacro15111 Vaccinium macrocarpon HOM05D000361 ORTHO05D004243 7.7e-216 754.6 790 58.6
CSS0030911 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 4.2e-214 748.8 790 58.4
Haze_05039 Corylus avellana HOM05D000361 ORTHO05D004243 3.6e-213 745.7 789 57.7
QL12p019966 Quercus lobata HOM05D000361 ORTHO05D004243 3.9e-212 742.3 790 57.7
Duzib138G1700 Durio zibethinus HOM05D000361 ORTHO05D004243 8.8e-212 741.1 790 57.7
CiPaw.07G117400 Carya illinoinensis HOM05D000361 ORTHO05D004243 3.8e-207 725.7 789 55.5
Prupe.5G007800 Prunus persica HOM05D000361 ORTHO05D004243 4.7e-205 718.8 790 57.6
Eucgr.H00929 Eucalyptus grandis HOM05D000361 ORTHO05D004243 6.7e-204 714.9 790 55.9
Ciclev10018936m.g Citrus clementina HOM05D000361 ORTHO05D004243 7.4e-203 711.4 790 56.7
MD03G1295300 Malus domestica HOM05D000361 ORTHO05D004243 8.2e-202 708.0 790 56.7
Peaxi162Scf00058g02630 Petunia axillaris HOM05D000361 ORTHO05D004243 8.2e-202 708.0 789 55.4
Cc01_g21390 Coffea canephora HOM05D000361 ORTHO05D004243 7.7e-200 701.4 789 54.1
MSTRG.21685 Avicennia marina HOM05D000361 ORTHO05D004243 5.0e-199 698.7 789 55.0
Nitab4.5_0006144g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 5.0e-199 698.7 789 54.9
CAN.G1280.26 Capsicum annuum HOM05D000361 ORTHO05D004243 1.5e-198 697.2 789 54.8
Gohir.D12G128800 Gossypium hirsutum HOM05D000361 ORTHO05D004243 1.5e-198 697.2 790 54.9
CANSAT25G2078 Cannabis sativa HOM05D000361 ORTHO05D004243 1.9e-198 696.8 790 54.9
Gohir.A12G125100 Gossypium hirsutum HOM05D000361 ORTHO05D004243 1.9e-198 696.8 790 55.2
Gorai.008G139800 Gossypium raimondii HOM05D000361 ORTHO05D004243 2.5e-198 696.4 790 55.1
COL.COLO4_23233 Corchorus olitorius HOM05D000361 ORTHO05D004243 5.5e-198 695.3 789 54.9
Cfa005802 Carpinus fangiana HOM05D000361 ORTHO05D005006 2.1e-197 693.3 747 57.2
Sopen06g004290 Solanum pennellii HOM05D000361 ORTHO05D004243 2.7e-197 693.0 789 54.8
Nn4g25601 Nelumbo nucifera HOM05D000361 ORTHO05D004243 3.6e-197 692.6 789 54.1
CsaV3_7G025080 Cucumis sativus L. HOM05D000361 ORTHO05D004243 4.7e-197 692.2 789 55.0
Solyc06g009650.3 Solanum lycopersicum HOM05D000361 ORTHO05D004243 6.1e-197 691.8 789 54.5
MELO3C023707.2 Cucumis melo HOM05D000361 ORTHO05D004243 8.0e-197 691.4 789 55.0
Nitab4.5_0000363g0270 Nicotiana tabacum HOM05D000361 ORTHO05D004243 1.5e-195 687.2 815 53.4
FvH4_5g39210 Fragaria vesca HOM05D000361 ORTHO05D004243 2.0e-195 686.8 791 54.6
PGR119G2139 Punica granatum HOM05D000361 ORTHO05D004243 4.4e-195 685.6 790 55.4
Aqoxy3G02976 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 9.7e-195 684.5 792 53.0
Gohir.A11G109900 Gossypium hirsutum HOM05D000361 ORTHO05D004243 2.2e-194 683.3 790 54.1
TWI36G0074 Tripterygium wilfordii HOM05D000361 ORTHO05D004243 1.1e-193 681.0 790 54.6
RcHm_v2.0_Chr7g0241471 Rosa chinensis HOM05D000361 ORTHO05D004243 1.8e-193 680.2 790 54.2
Sed0012026 Sechium edule HOM05D000361 ORTHO05D004243 9.1e-193 677.9 789 54.2
Gorai.007G122900 Gossypium raimondii HOM05D000361 ORTHO05D004243 1.2e-192 677.6 790 53.7
Ciclev10010795m.g Citrus clementina HOM05D000361 ORTHO05D004243 3.8e-191 672.5 790 54.4
Manes.01G227700 Manihot esculenta HOM05D000361 ORTHO05D004243 7.2e-190 668.3 793 53.8
Aqoxy3G01218 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 1.6e-189 667.2 795 51.7
DCAR_012354 Daucus carota HOM05D000361 ORTHO05D004243 4.7e-189 665.6 790 52.9
Potri.002G196300 Populus trichocarpa HOM05D000361 ORTHO05D004243 4.7e-189 665.6 790 52.9
Sopen01g031260 Solanum pennellii HOM05D000361 ORTHO05D004243 4.7e-189 665.6 789 53.1
Solyc01g079490.2 Solanum lycopersicum HOM05D000361 ORTHO05D004243 3.0e-188 662.9 789 53.0
AUR62011807 Chenopodium quinoa HOM05D000361 ORTHO05D004243 4.0e-188 662.5 792 53.5
Manes.05G003200 Manihot esculenta HOM05D000361 ORTHO05D004243 4.0e-188 662.5 793 52.7
Oeu008471.2 Olea europaea HOM05D000361 ORTHO05D004243 8.8e-188 661.4 790 53.8
Duzib133G0716 Durio zibethinus HOM05D000361 ORTHO05D004243 3.4e-187 659.4 789 52.7
AUR62024653 Chenopodium quinoa HOM05D000361 ORTHO05D004243 2.2e-186 656.8 792 53.4
FAN04G1824 Fragaria x ananassa HOM05D000361 ORTHO05D004243 1.8e-185 653.7 802 52.0
Migut.N00925 Erythranthe guttata HOM05D000361 ORTHO05D004243 2.4e-185 653.3 790 52.8
arahy.Tifrunner.gnm1.ann1.N0EKR1 Arachis hypogaea HOM05D000361 ORTHO05D004243 4.1e-185 652.5 794 53.0
SGA_v2.0_scaffold36G14324 Striga asiatica HOM05D000361 ORTHO05D004243 1.6e-184 650.6 804 52.0
ClCG07G000710 Citrullus lanatus HOM05D000361 ORTHO05D004243 2.7e-184 649.8 791 52.6
Glyma.02G012800 Glycine max HOM05D000361 ORTHO05D004243 6.5e-183 645.2 791 51.5
Ca_10285_v3 Cicer arietinum L. HOM05D000361 ORTHO05D004243 9.4e-182 641.3 793 51.2
Peaxi162Scf00691g00222 Petunia axillaris HOM05D000361 ORTHO05D004243 2.1e-181 640.2 789 51.1
Hund09630 Selenicereus undatus HOM05D000361 ORTHO05D004243 2.1e-181 640.2 790 52.2
TPR.G19758 Trifolium pratense HOM05D000361 ORTHO05D004243 2.7e-181 639.8 790 51.8
arahy.Tifrunner.gnm1.ann1.G7NAMC Arachis hypogaea HOM05D000361 ORTHO05D004243 6.1e-181 638.6 812 51.1
Glyma.10G013400 Glycine max HOM05D000361 ORTHO05D004243 1.0e-180 637.9 791 50.9
Medtr1g087100 Medicago truncatula HOM05D000361 ORTHO05D004243 3.0e-180 636.3 792 51.1
ATR0796G177 Amborella trichopoda HOM05D000361 ORTHO05D004243 4.4e-179 632.5 792 50.3
Lj5g0013347 Lotus japonicus HOM05D000361 ORTHO05D004243 4.4e-179 632.5 793 50.8
Phvul.007G214400 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 5.7e-179 632.1 791 50.4
EL10As5g23529 Beta vulgaris HOM05D000361 ORTHO05D004243 7.5e-179 631.7 794 51.6
FAN08G2818 Fragaria x ananassa HOM05D000361 ORTHO05D004243 9.8e-179 631.3 792 51.6
PSO017G2448 Papaver somniferum HOM05D000361 ORTHO05D004243 1.3e-178 630.9 790 50.1
PSO063G6259 Papaver somniferum HOM05D000361 ORTHO05D004243 2.2e-178 630.2 790 50.0
Psat6g161800 Pisum sativum HOM05D000361 ORTHO05D004243 2.2e-178 630.2 793 51.2
Potri.014G120900 Populus trichocarpa HOM05D000361 ORTHO05D004243 3.7e-178 629.4 790 51.1
VMungo0720G0598 Vigna mungo HOM05D000361 ORTHO05D004243 1.4e-177 627.5 790 49.9
FAN18G4464 Fragaria x ananassa HOM05D000361 ORTHO05D004243 5.9e-176 622.1 787 51.2
THA.LOC104799236 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 1.7e-175 620.5 794 49.7
ECA236G0422 Erigeron canadensis HOM05D000361 ORTHO05D005006 3.8e-175 619.4 782 51.5
Thhalv10028443m.g Eutrema salsugineum HOM05D000361 ORTHO05D004243 6.6e-175 618.6 793 49.8
THA.LOC104801306 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 1.9e-174 617.1 794 49.9
Sp6g01910 Schrenkiella parvula HOM05D000361 ORTHO05D004243 5.6e-174 615.5 793 49.4
Carub.0006s3520 Capsella rubella HOM05D000361 ORTHO05D004243 9.5e-174 614.8 794 49.6
Lalb_Chr06g0166851 Lupinus albus HOM05D000361 ORTHO05D004243 1.8e-172 610.5 795 50.8
AL6G51220 Arabidopsis lyrata HOM05D000361 ORTHO05D004243 9.8e-171 604.7 793 48.8
CARHR249640 Cardamine hirsuta HOM05D000361 ORTHO05D004243 1.7e-170 604.0 794 48.9
CDE11G0331 Ceratophyllum demersum HOM05D000361 ORTHO05D004243 4.9e-170 602.4 792 49.2
AT4G02030 Arabidopsis thaliana HOM05D000361 ORTHO05D004243 1.4e-169 600.9 793 48.8
Aqoxy328s001 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 2.0e-168 597.0 790 48.4
C09p01600 Brassica napus HOM05D000361 ORTHO05D004243 3.9e-167 592.8 793 48.3
A09p01480 Brassica napus HOM05D000361 ORTHO05D004243 5.0e-167 592.4 793 48.3
Nitab4.5_0001301g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 4.3e-166 589.3 789 49.0
HanXRQChr15g0464131 Helianthus annuus HOM05D000361 ORTHO05D004243 7.3e-166 588.6 790 49.9
BcaC04g24028 Brassica carinata HOM05D000361 ORTHO05D004243 3.6e-165 586.3 793 47.8
BcaB01g02087 Brassica carinata HOM05D000361 ORTHO05D004243 2.3e-164 583.6 793 48.0
Aa31LG5G1680 Aethionema arabicum HOM05D000361 ORTHO05D004243 2.9e-162 576.6 812 46.7
Cpa.g.sc18.42 Carica papaya HOM05D000361 ORTHO05D004243 1.4e-161 574.3 642 55.3
Lj1g0012423 Lotus japonicus HOM05D000361 ORTHO05D004243 7.0e-161 572.0 794 48.1
Sabra14G0089600 Salix brachista HOM05D000361 ORTHO05D005006 1.4e-156 557.8 871 44.1
Sabra02G0160700 Salix brachista HOM05D000361 ORTHO05D004243 8.9e-156 555.1 970 41.6
SalBow2G3626 Salvia bowleyana HOM05D000361 ORTHO05D004243 6.4e-154 548.9 832 47.0
BolC9t53093H Brassica oleracea HOM05D000361 ORTHO05D004243 3.9e-151 539.7 793 46.3
Os03g0737800 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D004243 5.1e-151 539.3 794 43.6
Psat3g020160 Pisum sativum HOM05D000361 ORTHO05D004243 3.1e-148 530.0 795 45.5
BraA09t35809Z Brassica rapa HOM05D000361 ORTHO05D004243 4.0e-148 529.6 811 45.4
Nitab4.5_0011075g0020 Nicotiana tabacum HOM05D000361 ORTHO05D004243 1.2e-147 528.1 730 48.1
Dinv10097 Davidia involucrata HOM05D000361 ORTHO05D004243 1.1e-145 521.5 486 63.8
Ah.10g031040 Amaranthus hybridus HOM05D000361 ORTHO05D004243 4.6e-144 516.2 693 49.9
Lsat_1_v5_gn_1_35460 Lactuca sativa HOM05D000361 ORTHO05D004243 3.9e-143 513.1 881 42.7
Atru.chr5.1003 Acer truncatum HOM05D000361 ORTHO05D004243 3.3e-142 510.0 565 57.0
arahy.Tifrunner.gnm1.ann1.KULZ0F Arachis hypogaea HOM05D000361 ORTHO05D004243 3.6e-141 506.5 791 45.9
ClCG10G006350 Citrullus lanatus HOM05D000361 ORTHO05D004243 6.9e-140 502.3 633 51.8
VMungo1383G3239 Vigna mungo HOM05D000361 ORTHO05D004243 3.4e-139 500.0 802 45.0
arahy.Tifrunner.gnm1.ann1.66RZQ8 Arachis hypogaea HOM05D000361 ORTHO05D004243 5.8e-139 499.2 791 45.5
TPR.G4118 Trifolium pratense HOM05D000361 ORTHO05D004243 1.0e-135 488.4 800 44.5
Sc05g0000420 Simmondsia chinensis HOM05D000361 ORTHO05D004243 1.7e-135 487.6 507 58.0
TAR633G1939 Trochodendron aralioides HOM05D000361 ORTHO05D004243 9.3e-121 438.7 438 60.3
HPP92_004593 Vanilla planifolia HOM05D000361 ORTHO05D004243 1.1e-113 415.2 693 41.8
Phvul.001G212700 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 1.6e-101 374.8 540 46.5
Gohir.D11G114600 Gossypium hirsutum HOM05D000361 ORTHO05D004243 3.1e-100 370.5 473 50.7
Oeu049914.1 Olea europaea HOM05D000361 ORTHO05D004243 9.1e-100 369.0 796 37.1
Lalb_Chr15g0078161 Lupinus albus HOM05D000361 ORTHO05D004243 7.7e-99 365.9 455 51.2
Ca_09209_v3 Cicer arietinum L. HOM05D000361 ORTHO05D004243 9.7e-94 349.0 479 48.0
SMO195G0031 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 2.4e-92 344.4 802 33.0
SMO116G0335 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 1.2e-91 342.0 802 32.8
DCAR_005759 Daucus carota HOM05D000361 ORTHO05D004243 5.5e-89 333.2 358 54.7
AagrBONN_evm.TU.Sc2ySwM_228.3730 Anthoceros agrestis HOM05D000361 ORTHO05D004243 1.2e-88 332.0 760 33.8
Pp3c12_23510 Physcomitrium patens HOM05D000361 ORTHO05D004243 1.4e-84 318.5 796 31.7
Mapoly0167s0022 Marchantia polymorpha HOM05D000361 ORTHO05D004243 8.5e-82 309.3 808 32.3
Pp3c3_36800 Physcomitrium patens HOM05D000361 ORTHO05D004243 1.7e-69 268.5 792 29.5
Oeu041216.1 Olea europaea HOM05D000361 ORTHO05D004243 1.8e-68 265.0 544 37.7
SHI15042 Sapria himalayana HOM05D000361 ORTHO05D004243 2.8e-64 251.1 808 30.0
Zm00001eb215280 Zea mays HOM05D000361 ORTHO05D004243 4.4e-62 243.8 360 43.3
unitig_736.g22938 Utricularia gibba HOM05D000361 ORTHO05D004243 1.7e-61 241.9 178 73.0
Lalb_Chr15g0078171 Lupinus albus HOM05D000361 ORTHO05D004243 1.5e-57 228.8 179 71.5
CAN.G777.12 Capsicum annuum HOM05D000361 ORTHO05D004243 2.5e-57 228.0 271 52.4
SEGI_09541 Sequoiadendron giganteum HOM05D000361 ORTHO05D004243 1.1e-52 212.6 174 63.8
DCAR_005760 Daucus carota HOM05D000361 ORTHO05D004243 9.2e-52 209.5 179 64.2
Zm00001eb056500 Zea mays HOM05D000361 ORTHO05D004243 9.5e-49 199.5 340 39.4
CBR_g48220 Chara braunii HOM05D000361 ORTHO05D004243 1.1e-44 186.0 964 24.9
CAN.G777.11 Capsicum annuum HOM05D000361 ORTHO05D004243 2.5e-41 174.9 200 53.0
Dinv10095 Davidia involucrata HOM05D000361 ORTHO05D004243 2.8e-40 171.4 120 75.0
BcaC04g24029 Brassica carinata HOM05D000361 ORTHO05D004243 1.5e-38 165.6 196 53.1
SEGI_20894 Sequoiadendron giganteum HOM05D000361 ORTHO05D004243 1.3e-37 162.5 274 40.1
Cc02_g33820 Coffea canephora HOM05D000361 ORTHO05D004243 1.9e-36 158.7 283 41.7
Cc05_g04720 Coffea canephora HOM05D000361 ORTHO05D004243 1.2e-35 156.0 244 45.1
arahy.Tifrunner.gnm1.ann1.1JN5P4 Arachis hypogaea HOM05D000361 ORTHO05D004243 2.1e-35 155.2 115 71.3
Actinidia04687 Actinidia chinensis HOM05D000361 ORTHO05D004243 6.0e-35 153.7 231 45.5
Actinidia27762 Actinidia chinensis HOM05D000361 ORTHO05D004243 6.0e-35 153.7 231 45.5
Cc04_g08620 Coffea canephora HOM05D000361 ORTHO05D004243 6.0e-35 153.7 258 43.0
Cc11_g04100 Coffea canephora HOM05D000361 ORTHO05D004243 7.8e-35 153.3 244 45.1
arahy.Tifrunner.gnm1.ann1.Z1FAFN Arachis hypogaea HOM05D000361 ORTHO05D004243 1.3e-34 152.5 115 70.4
CDE05G1119 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 1.7e-34 152.1 240 43.3
unitig_736.g22937 Utricularia gibba HOM05D000361 ORTHO05D004243 1.7e-34 152.1 272 40.8
Cc02_g26000 Coffea canephora HOM05D000361 ORTHO05D004243 3.0e-34 151.4 258 42.6
arahy.Tifrunner.gnm1.ann1.3FW809 Arachis hypogaea HOM05D000361 ORTHO05D004243 1.1e-33 149.4 108 72.2
Oeu049910.1 Olea europaea HOM05D000361 ORTHO05D004243 1.2e-32 146.0 110 70.9
Glyma.19G216151 Glycine max HOM05D000361 ORTHO05D004243 6.2e-32 143.7 119 68.9
Actinidia04728 Actinidia chinensis HOM05D000361 ORTHO05D004243 5.8e-30 137.1 231 43.3
Atru.chr5.1002 Acer truncatum HOM05D000361 ORTHO05D004243 2.5e-25 121.7 83 75.9
arahy.Tifrunner.gnm1.ann1.99VT9P Arachis hypogaea HOM05D000361 ORTHO05D004243 5.2e-23 114.0 110 58.2
arahy.Tifrunner.gnm1.ann1.3YE891 Arachis hypogaea HOM05D000361 ORTHO05D004243 5.8e-22 110.5 80 73.8
Glyma.14G155300 Glycine max HOM05D000361 ORTHO05D004243 1.0e-18 99.8 59 71.2
Cc03_g12210 Coffea canephora HOM05D000361 ORTHO05D004243 1.2e-14 86.3 76 60.5
Cc00_g34370 Coffea canephora HOM05D000361 ORTHO05D004243 2.0e-14 85.5 76 57.9
COL.COLO4_26725 Corchorus olitorius HOM05D000361 ORTHO05D004243 2.0e-14 85.5 67 71.6
Cc00_g34360 Coffea canephora HOM05D000361 ORTHO05D004243 9.9e-14 83.2 76 59.2
Hma1.2p1_0568F.1_g180240 Hydrangea macrophylla HOM05D000361 ORTHO05D004243 1.9e-12 79.0 60 70.0
Hma1.2p1_0023F.1_g015020 Hydrangea macrophylla HOM05D002686 ORTHO05D004243 7.9e-11 73.6 83 50.6
arahy.Tifrunner.gnm1.ann1.F7DSY0 Arachis hypogaea HOM05D000361 ORTHO05D004243 2.3e-10 72.0 104 45.2
arahy.Tifrunner.gnm1.ann1.WB4NLC Arachis hypogaea HOM05D001795 ORTHO05D001741 3.7e-08 64.7 37 86.5
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 6.2e-08 63.9 36 86.1
arahy.Tifrunner.gnm1.ann1.DXQ6L2 Arachis hypogaea HOM05D001795 ORTHO05D001741 8.1e-08 63.5 37 83.8
Medtr7g109490 Medicago truncatula HOM05D000361 ORTHO05D004243 3.1e-07 61.6 84 44.0
Lsat_1_v5_gn_0_31980 Lactuca sativa HOM05D000329 ORTHO05D000833 2.0e-06 58.9 56 62.5
Cre09.g404650 Chlamydomonas reinhardtii HOM05D000361 ORTHO05D004243 5.8e-06 57.4 604 21.7
Lsat_1_v5_gn_9_7721 Lactuca sativa HOM05D000329 ORTHO05D000833 5.8e-06 57.4 57 63.2
Medtr1g087050 Medicago truncatula HOM05D000361 ORTHO05D004243 7.6e-06 57.0 38 73.7
TAR362G1176 Trochodendron aralioides HOM05D000361 ORTHO05D004243 7.6e-06 57.0 37 75.7


User provided reference genes

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