Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 1.6e-305 1052.0 529 100.0
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 2.1e-246 855.5 542 79.3
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 7.6e-236 820.5 535 76.3
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 4.9e-235 817.8 545 76.3
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 3.2e-234 815.1 541 76.5
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 1.0e-232 810.1 540 76.9
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 1.0e-232 810.1 533 76.0
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 3.0e-232 808.5 527 76.9
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 5.1e-232 807.7 533 77.3
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 1.5e-231 806.2 546 75.3
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 1.3e-230 803.1 521 77.9
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 1.6e-230 802.7 531 77.2
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 1.4e-229 799.7 537 74.9
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 2.6e-228 795.4 541 74.1
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 4.9e-227 791.2 530 75.8
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 1.1e-226 790.0 542 74.7
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.4e-226 789.6 539 74.8
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 1.9e-226 789.3 542 74.4
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 5.5e-226 787.7 528 75.0
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 5.5e-226 787.7 530 76.2
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 1.6e-225 786.2 542 74.4
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 7.9e-225 783.9 541 74.1
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 1.0e-224 783.5 538 73.4
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 1.3e-224 783.1 529 74.5
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 3.0e-224 781.9 542 73.4
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 5.1e-224 781.2 588 69.6
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 1.1e-223 780.0 542 74.7
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 2.5e-223 778.9 533 74.1
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 5.7e-223 777.7 512 76.0
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 1.6e-222 776.2 530 73.6
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 1.1e-221 773.5 561 70.4
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 9.0e-221 770.4 531 74.0
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 2.6e-220 768.8 524 74.2
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 1.0e-219 766.9 525 74.7
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 3.8e-219 765.0 531 73.4
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 6.5e-219 764.2 532 72.9
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 8.5e-219 763.8 513 75.2
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 1.1e-218 763.5 527 72.9
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 1.4e-218 763.1 530 73.8
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.5e-218 762.3 531 72.5
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 4.2e-218 761.5 528 72.9
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 5.5e-218 761.1 534 73.6
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 7.2e-218 760.8 524 73.1
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 9.3e-218 760.4 530 73.0
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 9.3e-218 760.4 520 74.4
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 3.6e-217 758.4 518 73.0
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 4.6e-217 758.1 530 72.8
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 6.1e-217 757.7 526 72.6
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 3.9e-216 755.0 524 73.3
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 8.7e-216 753.8 526 72.8
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 1.1e-215 753.4 511 74.0
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 3.3e-215 751.9 529 73.9
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 5.7e-215 751.1 544 73.0
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 7.4e-215 750.7 524 72.7
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 7.4e-215 750.7 522 73.0
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 4.8e-214 748.0 538 70.3
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 6.3e-214 747.7 536 70.3
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 1.2e-212 743.4 525 72.0
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 5.9e-212 741.1 528 71.6
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 7.7e-212 740.7 521 71.6
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 7.7e-212 740.7 526 70.7
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 1.0e-211 740.3 574 68.1
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 5.0e-211 738.0 521 71.2
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 6.5e-211 737.6 539 68.8
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 4.2e-210 734.9 530 69.6
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 1.2e-209 733.4 541 68.6
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 1.4e-208 729.9 527 70.4
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 5.1e-208 728.0 541 68.4
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 8.8e-208 727.2 561 67.9
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 1.1e-207 726.9 545 67.7
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 2.0e-207 726.1 545 67.5
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 4.4e-207 724.9 545 67.5
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 4.4e-207 724.9 545 67.5
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 5.7e-207 724.5 539 67.5
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 1.7e-206 723.0 490 74.9
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 2.2e-206 722.6 538 68.6
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 6.3e-206 721.1 523 69.6
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 1.4e-205 719.9 524 70.2
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 2.0e-204 716.1 512 71.5
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 3.8e-203 711.8 539 65.9
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 1.1e-202 710.3 553 67.3
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.4e-202 709.9 489 73.2
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 1.4e-202 709.9 520 70.0
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 2.5e-202 709.1 520 68.8
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 3.2e-202 708.8 516 70.0
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 8.8e-200 700.7 486 74.1
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 1.1e-199 700.3 515 69.7
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 2.6e-199 699.1 490 72.4
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 3.7e-198 695.3 476 73.3
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 9.4e-194 680.6 524 67.9
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 4.1e-189 665.2 523 65.6
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 1.6e-188 663.3 592 63.9
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 1.5e-186 656.8 529 64.3
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 3.6e-185 652.1 533 64.5
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 8.0e-177 624.4 550 61.5
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 9.8e-175 617.5 410 75.6
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 1.7e-174 616.7 512 64.8
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 3.0e-163 579.3 405 72.8
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 3.2e-157 559.3 409 70.4
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 4.9e-134 482.3 532 52.4
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.7e-131 473.8 555 49.2
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 2.0e-127 460.3 351 69.8
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 1.9e-117 427.2 546 45.2
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 9.0e-112 408.3 559 41.9
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 6.5e-110 402.1 291 69.1
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 4.6e-108 396.0 519 43.4
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 4.6e-108 396.0 552 42.6
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 1.0e-107 394.8 288 70.1
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 2.9e-102 376.7 250 74.8
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 3.8e-102 376.3 264 72.3
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 1.6e-100 370.9 532 39.8
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 1.0e-99 368.2 316 61.1
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 4.4e-82 309.7 414 43.0
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 2.7e-76 290.4 176 79.0
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 4.4e-74 283.1 314 53.2
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 2.7e-68 263.8 620 30.8
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 5.5e-61 239.6 220 59.1
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 5.2e-59 233.0 269 50.6
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 8.6e-54 215.7 162 67.9
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 2.3e-51 207.6 152 68.4
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 1.3e-46 191.8 166 59.6
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 3.0e-46 190.7 99 87.9
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 7.5e-42 176.0 700 25.6
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 2.9e-41 174.1 122 71.3
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 1.1e-40 172.2 132 66.7
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.4e-40 171.8 115 74.8
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 3.0e-30 137.5 96 70.8
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 3.8e-25 120.6 83 71.1
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 1.9e-24 118.2 179 36.9
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 3.8e-17 94.0 72 59.7
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 4.2e-16 90.5 116 46.6
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 7.1e-16 89.7 51 86.3
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 4.9e-09 67.0 110 35.5
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 5.4e-08 63.5 40 77.5
Medtr3g062620 Medicago truncatula HOM05D005743 ORTHO05D007031 6.7e-06 56.6 40 72.5


User provided reference genes

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