Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 2.0e-127 459.1 232 100.0
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 3.6e-105 385.2 227 82.8
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 2.3e-104 382.5 227 82.4
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 6.3e-102 374.4 227 81.1
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 2.4e-101 372.5 229 79.5
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 1.6e-100 369.8 227 79.3
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 2.0e-100 369.4 227 80.2
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 3.5e-100 368.6 229 79.0
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 7.7e-100 367.5 227 78.9
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 1.0e-99 367.1 228 79.8
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.0e-99 367.1 227 80.2
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 2.3e-99 365.9 228 78.5
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 2.3e-99 365.9 227 78.4
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 3.8e-99 365.2 227 78.0
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 5.0e-99 364.8 229 78.2
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 6.5e-99 364.4 227 79.7
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 4.2e-98 361.7 227 78.4
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 5.5e-98 361.3 227 78.4
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 2.1e-97 359.4 228 78.5
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 4.7e-97 358.2 228 76.8
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 6.1e-97 357.8 227 77.5
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 6.1e-97 357.8 228 77.2
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 8.0e-97 357.5 227 78.4
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 8.0e-97 357.5 228 77.6
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 1.8e-96 356.3 228 78.5
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 4.0e-96 355.1 228 76.3
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 1.2e-95 353.6 228 75.4
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 1.5e-95 353.2 229 74.7
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 2.6e-95 352.4 228 75.9
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.6e-95 352.4 229 75.5
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 2.6e-95 352.4 227 75.3
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 3.4e-95 352.1 227 75.8
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 3.4e-95 352.1 229 75.1
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 7.5e-95 350.9 228 74.6
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 7.5e-95 350.9 229 75.1
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 9.8e-95 350.5 228 77.6
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 1.3e-94 350.1 219 80.4
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.3e-94 350.1 228 77.2
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.3e-94 350.1 228 77.2
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 2.8e-94 349.0 228 76.8
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 4.9e-94 348.2 228 74.1
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 4.9e-94 348.2 228 76.8
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 6.3e-94 347.8 228 75.0
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 6.3e-94 347.8 220 78.2
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 8.3e-94 347.4 229 75.1
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 1.1e-93 347.1 228 73.7
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 1.4e-93 346.7 227 74.9
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 1.8e-93 346.3 228 75.0
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 2.4e-93 345.9 228 76.3
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 4.1e-93 345.1 228 76.8
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 1.2e-92 343.6 228 73.7
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 2.0e-92 342.8 228 75.0
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 2.7e-92 342.4 227 73.6
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 5.9e-92 341.3 228 73.2
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 7.8e-92 340.9 230 71.7
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 1.3e-91 340.1 228 73.7
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.3e-91 339.3 219 77.6
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 2.9e-91 339.0 228 73.2
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 2.9e-91 339.0 233 74.2
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 3.8e-91 338.6 227 72.2
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.0e-91 338.2 228 75.4
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 8.6e-91 337.4 227 71.4
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 8.6e-91 337.4 228 72.4
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 1.9e-90 336.3 229 72.1
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 4.3e-90 335.1 265 64.5
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 7.3e-90 334.3 227 72.2
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 1.6e-89 333.2 227 71.8
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 2.8e-89 332.4 229 71.6
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 3.6e-89 332.0 229 71.6
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 4.7e-89 331.6 230 70.9
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 6.1e-89 331.3 230 70.0
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.0e-88 330.5 226 72.6
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 2.3e-88 329.3 230 70.9
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 3.0e-88 328.9 227 70.5
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 5.2e-88 328.2 224 70.1
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 8.9e-88 327.4 224 70.5
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 2.0e-87 326.2 228 68.4
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 2.6e-87 325.9 227 70.0
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 2.6e-87 325.9 230 70.9
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 2.6e-87 325.9 224 70.5
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 2.6e-87 325.9 227 71.8
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 3.4e-87 325.5 225 70.2
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 5.7e-87 324.7 228 69.3
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 7.5e-87 324.3 228 68.9
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 7.5e-87 324.3 228 68.9
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 2.2e-86 322.8 228 67.5
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 2.2e-86 322.8 228 68.9
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.7e-86 322.0 202 79.7
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 8.3e-86 320.9 228 67.1
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.1e-85 320.5 230 69.1
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 1.1e-85 320.5 227 68.7
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 1.4e-85 320.1 227 68.7
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.4e-85 320.1 230 69.1
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.4e-85 320.1 223 69.1
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 1.4e-85 320.1 227 67.8
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.8e-85 319.7 227 68.3
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 7.0e-85 317.8 227 67.0
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 7.0e-85 317.8 228 67.5
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.6e-84 316.6 228 67.1
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 2.0e-84 316.2 228 66.2
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 7.8e-84 314.3 228 66.2
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 1.0e-83 313.9 229 65.9
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 1.3e-83 313.5 229 65.5
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 1.3e-83 313.5 229 65.9
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 2.3e-83 312.8 229 65.9
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 3.0e-83 312.4 229 65.5
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 3.9e-83 312.0 229 65.9
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 3.9e-83 312.0 229 65.9
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 5.0e-83 311.6 229 68.1
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 6.6e-83 311.2 228 65.8
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 7.3e-82 307.8 310 53.5
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.2e-81 307.0 229 64.6
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.8e-80 301.2 228 67.5
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 3.4e-79 298.9 229 63.3
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 5.8e-79 298.1 204 70.6
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 1.3e-78 297.0 231 67.1
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 1.7e-78 296.6 209 67.9
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 2.9e-78 295.8 227 63.4
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 4.9e-78 295.0 195 74.4
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 4.1e-77 292.0 192 74.0
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 2.3e-75 286.2 221 63.3
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 5.0e-75 285.0 230 63.9
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 1.1e-74 283.9 231 61.0
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.5e-74 283.5 178 78.7
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 7.3e-74 281.2 227 60.4
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.2e-73 280.4 203 67.0
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 2.0e-71 273.1 232 61.6
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 3.7e-70 268.9 195 67.7
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 2.8e-65 252.7 152 80.9
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 3.4e-63 245.7 238 55.0
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 3.8e-62 242.3 205 62.9
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 7.8e-60 234.6 224 52.2
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 6.6e-59 231.5 215 58.6
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.1e-57 226.5 144 77.8
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 3.6e-57 225.7 209 54.1
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 4.7e-57 225.3 220 50.9
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 4.7e-57 225.3 133 81.2
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 4.2e-53 212.2 230 47.8
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.8e-52 208.0 124 82.3
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 6.2e-49 198.4 145 69.7
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 1.5e-47 193.7 144 67.4
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 4.5e-47 192.2 140 67.1
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 1.2e-44 184.1 119 74.8
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 5.1e-43 178.7 143 59.4
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 8.7e-43 177.9 135 68.1
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 7.4e-42 174.9 134 63.4
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 2.4e-40 169.9 142 58.5
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 5.3e-40 168.7 202 44.1
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 6.4e-38 161.8 147 56.5
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 2.7e-36 156.4 185 44.3
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 8.7e-35 151.4 126 63.5
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 9.6e-34 147.9 155 52.3
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 1.4e-32 144.1 85 78.8
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 4.0e-32 142.5 194 43.3
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 9.0e-32 141.4 108 64.8
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.2e-31 141.0 88 79.5
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 4.5e-31 139.0 98 71.4
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 3.8e-30 136.0 100 67.0
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 1.2e-28 131.0 85 76.5
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 3.5e-28 129.4 100 63.0
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 6.0e-28 128.6 106 60.4
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 7.9e-28 128.3 82 74.4
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 1.9e-26 123.6 108 62.0
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 4.3e-26 122.5 95 64.2
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 5.7e-26 122.1 76 78.9
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.3e-25 120.9 85 65.9
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 1.6e-25 120.6 85 69.4
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 1.4e-24 117.5 74 77.0
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 3.1e-24 116.3 147 46.3
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 3.1e-24 116.3 85 68.2
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 6.9e-24 115.2 76 73.7
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.6e-23 111.7 85 67.1
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 1.5e-18 97.4 204 31.4
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 1.9e-18 97.1 61 75.4
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 8.2e-17 91.7 85 57.6
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 3.1e-16 89.7 219 29.7
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 4.5e-15 85.9 88 54.5
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 4.5e-15 85.9 51 84.3
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.4e-13 80.9 70 55.7
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 1.9e-13 80.5 60 65.0
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 3.3e-10 69.7 187 27.3
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 1.3e-09 67.8 67 50.7
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 2.2e-09 67.0 49 59.2


User provided reference genes

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