Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A1168T22 Lonicera japonica HOM05D008098 ORTHO05D009893 5.2e-87 324.3 161 100.0
Lj9A530T23 Lonicera japonica HOM05D008098 ORTHO05D009893 5.2e-87 324.3 161 100.0
Dinv34781 Davidia involucrata HOM05D008098 ORTHO05D009893 3.4e-38 162.2 147 61.2
CSS0044396 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 3.1e-31 139.0 149 58.4
GSVIVG01001187001 Vitis vinifera HOM05D008098 ORTHO05D009893 4.6e-27 125.2 161 44.7
CSS0035580 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 1.0e-26 124.0 148 53.4
Actinidia00786 Actinidia chinensis HOM05D008098 ORTHO05D009893 9.1e-23 110.9 146 45.2
Haze_04677 Corylus avellana HOM05D008098 ORTHO05D009893 4.5e-22 108.6 157 43.3
Rhsim13G0027200 Rhododendron simsii HOM05D008098 ORTHO05D009893 7.7e-22 107.8 146 47.3
TAR260G0007 Trochodendron aralioides HOM05D008098 ORTHO05D009893 2.2e-21 106.3 162 40.7
Cfa006173 Carpinus fangiana HOM05D008098 ORTHO05D009893 5.0e-21 105.1 157 42.7
TAR633G1927 Trochodendron aralioides HOM05D008098 ORTHO05D009893 2.5e-20 102.8 165 46.1
Nn1g02382 Nelumbo nucifera HOM05D008098 ORTHO05D009893 9.4e-20 100.9 163 42.3
TAR636G3050 Trochodendron aralioides HOM05D008098 ORTHO05D009893 1.6e-19 100.1 146 45.9
TAR633G0062 Trochodendron aralioides HOM05D008098 ORTHO05D009893 2.7e-19 99.4 165 44.8
CiPaw.07G089300 Carya illinoinensis HOM05D008098 ORTHO05D009893 7.9e-19 97.8 135 44.4
Sc17g0001270 Simmondsia chinensis HOM05D008098 ORTHO05D009893 3.0e-18 95.9 143 39.2
Migut.D00327 Erythranthe guttata HOM05D008098 ORTHO05D009893 1.3e-16 90.5 149 40.3
Dinv14021 Davidia involucrata HOM05D008098 ORTHO05D009893 4.8e-16 88.6 150 42.0
Oeu023884.1 Olea europaea HOM05D008098 ORTHO05D009893 1.4e-15 87.0 147 38.8
MSTRG.12554 Avicennia marina HOM05D008098 ORTHO05D009893 1.8e-15 86.7 141 41.1
MSTRG.17457 Avicennia marina HOM05D008098 ORTHO05D009893 3.1e-15 85.9 147 37.4
MSTRG.18252 Avicennia marina HOM05D008098 ORTHO05D009893 3.1e-15 85.9 139 40.3
Dinv44560 Davidia involucrata HOM05D008098 ORTHO05D009893 3.1e-15 85.9 145 41.4
DCAR_005861 Daucus carota HOM05D008098 ORTHO05D009893 5.3e-15 85.1 147 39.5
Hma1.2p1_1572F.1_g291470 Hydrangea macrophylla HOM05D008098 ORTHO05D009893 5.3e-15 85.1 147 38.1
Hund02840 Selenicereus undatus HOM05D008098 ORTHO05D009893 5.3e-15 85.1 155 37.4
PGR044G2144 Punica granatum HOM05D008098 ORTHO05D009893 3.8e-13 79.0 133 41.4
Atru.chr5.1485 Acer truncatum HOM05D008098 ORTHO05D009893 5.0e-13 78.6 159 34.0
Manes.15G031000 Manihot esculenta HOM05D008098 ORTHO05D009893 1.1e-12 77.4 157 33.8
EL10Ac5g10528 Beta vulgaris HOM05D008098 ORTHO05D009893 1.4e-12 77.0 153 34.6
CSS0028803 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 1.4e-12 77.0 115 44.3
CSS0050104 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 9.4e-12 74.3 115 43.5
Duzib138G1817 Durio zibethinus HOM05D008098 ORTHO05D009893 2.1e-11 73.2 138 34.1
Prupe.8G237300 Prunus persica HOM05D008098 ORTHO05D009893 2.7e-11 72.8 138 37.0
FAN24G1322 Fragaria x ananassa HOM05D008098 ORTHO05D009893 4.7e-11 72.0 144 34.7
FAN27G1076 Fragaria x ananassa HOM05D008098 ORTHO05D009893 8.0e-11 71.2 144 34.7
Aqoxy5G00430 Aquilegia oxysepala HOM05D008098 ORTHO05D009893 1.0e-10 70.9 93 44.1
SGA_v2.0_scaffold1G00510 Striga asiatica HOM05D008098 ORTHO05D009893 1.0e-10 70.9 50 62.0
DCAR_002716 Daucus carota HOM05D008098 ORTHO05D009893 5.2e-10 68.6 155 36.1
FAN20G2698 Fragaria x ananassa HOM05D008098 ORTHO05D009893 6.7e-10 68.2 147 34.0
SalBow4G2107 Salvia bowleyana HOM05D008098 ORTHO05D009893 6.7e-10 68.2 116 36.2
RcHm_v2.0_Chr6g0290431 Rosa chinensis HOM05D008098 ORTHO05D009893 1.5e-09 67.0 142 32.4
COL.COLO4_11875 Corchorus olitorius HOM05D008098 ORTHO05D009893 7.4e-09 64.7 147 29.9
FvH4_2g23180 Fragaria vesca HOM05D008098 ORTHO05D009893 7.4e-09 64.7 144 33.3
Potri.002G050100 Populus trichocarpa HOM05D008098 ORTHO05D009893 1.3e-08 63.9 140 30.0
Prupe.1G018100 Prunus persica HOM05D008098 ORTHO05D009893 1.7e-08 63.5 151 31.8
Thecc.01G274000 Theobroma cacao HOM05D008098 ORTHO05D009893 2.2e-08 63.2 73 42.5
SalBow6G1276 Salvia bowleyana HOM05D008098 ORTHO05D009893 4.8e-08 62.0 82 36.6
Rhsim04G0199800 Rhododendron simsii HOM05D008098 ORTHO05D009893 6.3e-08 61.6 132 32.6
Aa31LG3G15730 Aethionema arabicum HOM05D000690 ORTHO05D001022 8.2e-08 61.2 75 38.7
Sabra05G0162400 Salix brachista HOM05D008098 ORTHO05D009893 8.2e-08 61.2 143 31.5
Atru.chr4.2423 Acer truncatum HOM05D008098 ORTHO05D009893 1.1e-07 60.8 144 32.6
Gohir.D09G220150 Gossypium hirsutum HOM05D008098 ORTHO05D009893 2.4e-07 59.7 108 30.6
Carub.0005s2991 Capsella rubella HOM05D013860 ORTHO05D009893 3.1e-07 59.3 64 42.2
Ciclev10022764m.g Citrus clementina HOM05D008098 ORTHO05D009893 3.1e-07 59.3 140 30.7
C09p05110 Brassica napus HOM05D000562 ORTHO05D000388 5.3e-07 58.5 52 44.2
BolC9t53434H Brassica oleracea HOM05D000562 ORTHO05D000388 5.3e-07 58.5 46 47.8
Ah.02g111250 Amaranthus hybridus HOM05D008098 ORTHO05D009893 7.0e-07 58.2 159 32.1
C04p29970 Brassica napus HOM05D013860 ORTHO05D009893 9.1e-07 57.8 94 35.1
BolC4t24530H Brassica oleracea HOM05D013860 ORTHO05D009893 9.1e-07 57.8 94 35.1
BcaC04g23751 Brassica carinata HOM05D000690 ORTHO05D000388 1.2e-06 57.4 52 44.2
A09p04730 Brassica napus HOM05D000562 ORTHO05D000388 1.2e-06 57.4 52 44.2
BraA09t36109Z Brassica rapa HOM05D000562 ORTHO05D000388 1.2e-06 57.4 52 44.2
Medtr3g073960 Medicago truncatula HOM05D000562 ORTHO05D000388 1.2e-06 57.4 86 32.6
CDE11G0202 Ceratophyllum demersum HOM05D000562 ORTHO05D000388 2.0e-06 56.6 56 42.9
Sp1g19660 Schrenkiella parvula HOM05D000562 ORTHO05D000388 2.0e-06 56.6 147 30.6
Ca_15229_v3 Cicer arietinum L. HOM05D000562 ORTHO05D000388 2.6e-06 56.2 78 32.1
A04p00150 Brassica napus HOM05D013860 ORTHO05D009893 4.5e-06 55.5 55 43.6
BraA04t15737Z Brassica rapa HOM05D013860 ORTHO05D009893 4.5e-06 55.5 55 43.6
Actinidia23529 Actinidia chinensis HOM05D008098 ORTHO05D009893 5.9e-06 55.1 140 30.7
CARHR182620 Cardamine hirsuta HOM05D000562 ORTHO05D000388 5.9e-06 55.1 47 44.7
Manes.01G205500 Manihot esculenta HOM05D008098 ORTHO05D009893 5.9e-06 55.1 140 27.9
Nitab4.5_0000469g0170 Nicotiana tabacum HOM05D000562 ORTHO05D000388 5.9e-06 55.1 113 29.2
CSS0015317 Camellia sinensis var. sinensis HOM05D008098 ORTHO05D009893 7.7e-06 54.7 96 34.4
Peaxi162Scf00041g00016 Petunia axillaris HOM05D000562 ORTHO05D000388 7.7e-06 54.7 104 31.7
SGA_v2.0_scaffold67G22609 Striga asiatica HOM05D000562 ORTHO05D000388 7.7e-06 54.7 90 32.2


User provided reference genes

Program Settings