Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A1164T58 Lonicera japonica HOM05D004978 ORTHO05D005621 3.1e-122 441.8 221 100.0
Dinv32884 Davidia involucrata HOM05D004978 ORTHO05D005621 7.7e-65 251.1 207 63.8
GSVIVG01003120001 Vitis vinifera HOM05D004978 ORTHO05D005621 5.3e-58 228.4 186 62.4
FAN27G2645 Fragaria x ananassa HOM05D004978 ORTHO05D005621 6.5e-56 221.5 206 54.4
Haze_04642 Corylus avellana HOM05D004978 ORTHO05D005621 4.2e-55 218.8 209 57.4
QL12p042266 Quercus lobata HOM05D004978 ORTHO05D005621 1.2e-54 217.2 209 55.0
FvH4_2g22940 Fragaria vesca HOM05D004978 ORTHO05D005621 1.6e-54 216.9 205 53.7
FAN15G0608 Fragaria x ananassa HOM05D004978 ORTHO05D005621 1.6e-54 216.9 206 53.4
FAN20G1006 Fragaria x ananassa HOM05D004978 ORTHO05D005621 2.7e-54 216.1 205 53.2
Actinidia24924 Actinidia chinensis HOM05D004978 ORTHO05D005621 8.0e-54 214.5 207 57.0
CiPaw.07G086800 Carya illinoinensis HOM05D004978 ORTHO05D005621 8.0e-54 214.5 198 57.1
Manes.05G081900 Manihot esculenta HOM05D004978 ORTHO05D005621 8.0e-54 214.5 202 55.9
Rhsim01G0272000 Rhododendron simsii HOM05D004978 ORTHO05D005621 1.8e-53 213.4 165 64.8
Atru.chr5.1521 Acer truncatum HOM05D004978 ORTHO05D005621 5.7e-52 208.4 208 54.3
QL01p000805 Quercus lobata HOM05D004978 ORTHO05D005621 4.8e-51 205.3 186 56.5
FAN24G2655 Fragaria x ananassa HOM05D004978 ORTHO05D005621 6.3e-51 204.9 180 56.1
Ciclev10019332m.g Citrus clementina HOM05D004978 ORTHO05D005621 1.4e-50 203.8 185 55.1
vmacro14887 Vaccinium macrocarpon HOM05D004978 ORTHO05D005621 1.4e-50 203.8 208 55.8
Gohir.A08G063900 Gossypium hirsutum HOM05D004978 ORTHO05D005621 1.8e-50 203.4 192 55.7
DCAR_002701 Daucus carota HOM05D004978 ORTHO05D005621 2.4e-50 203.0 173 61.8
Gohir.D08G072400 Gossypium hirsutum HOM05D004978 ORTHO05D005621 3.1e-50 202.6 192 55.7
Thecc.01G271500 Theobroma cacao HOM05D004978 ORTHO05D005621 3.1e-50 202.6 182 54.4
Gorai.004G076600 Gossypium raimondii HOM05D004978 ORTHO05D005621 5.4e-50 201.8 192 55.7
Potri.005G215200 Populus trichocarpa HOM05D004978 ORTHO05D005621 5.4e-50 201.8 206 55.3
MD11G1278700 Malus domestica HOM05D004978 ORTHO05D005621 7.0e-50 201.4 183 55.7
RcHm_v2.0_Chr6g0289911 Rosa chinensis HOM05D004978 ORTHO05D005621 1.6e-49 200.3 208 50.0
HanXRQChr04g0113941 Helianthus annuus HOM05D004978 ORTHO05D005621 2.0e-49 199.9 155 65.8
Cc01_g19000 Coffea canephora HOM05D004978 ORTHO05D005621 4.5e-49 198.7 163 62.6
Nn1g02459 Nelumbo nucifera HOM05D004978 ORTHO05D005621 4.5e-49 198.7 208 51.4
Cpa.g.sc52.118 Carica papaya HOM05D004978 ORTHO05D005621 1.0e-48 197.6 175 56.6
Migut.D00356 Erythranthe guttata HOM05D004978 ORTHO05D005621 2.2e-48 196.4 200 54.5
Cfa006202 Carpinus fangiana HOM05D004978 ORTHO05D005621 2.9e-48 196.1 180 56.7
Peaxi162Scf00259g00051 Petunia axillaris HOM05D004978 ORTHO05D005621 1.5e-47 193.7 204 52.9
Lsat_1_v5_gn_8_93980 Lactuca sativa HOM05D004978 ORTHO05D005621 1.9e-47 193.4 165 61.2
COL.COLO4_09187 Corchorus olitorius HOM05D004978 ORTHO05D005621 9.5e-47 191.0 180 53.3
Nitab4.5_0004115g0020 Nicotiana tabacum HOM05D004978 ORTHO05D005621 9.5e-47 191.0 208 53.4
Nitab4.5_0000459g0120 Nicotiana tabacum HOM05D004978 ORTHO05D005621 1.6e-46 190.3 208 52.9
Medtr1g071300 Medicago truncatula HOM05D004978 ORTHO05D005621 8.0e-46 188.0 214 50.0
Oeu014736.1 Olea europaea HOM05D004978 ORTHO05D005621 8.0e-46 188.0 170 59.4
TWI75G1276 Tripterygium wilfordii HOM05D004978 ORTHO05D005621 8.0e-46 188.0 209 52.6
Glyma.10G029800 Glycine max HOM05D004978 ORTHO05D005621 1.0e-45 187.6 205 51.7
Aqoxy5G00398 Aquilegia oxysepala HOM05D004978 ORTHO05D005621 1.4e-45 187.2 199 51.8
arahy.Tifrunner.gnm1.ann1.ZM38TH Arachis hypogaea HOM05D004978 ORTHO05D005621 1.4e-45 187.2 205 52.2
Solyc09g065690.4 Solanum lycopersicum HOM05D004978 ORTHO05D005621 1.4e-45 187.2 200 53.5
arahy.Tifrunner.gnm1.ann1.54WUVN Arachis hypogaea HOM05D004978 ORTHO05D005621 4.0e-45 185.7 206 51.9
Lj5g0010127 Lotus japonicus HOM05D004978 ORTHO05D005621 5.2e-45 185.3 205 52.2
Sopen09g027430 Solanum pennellii HOM05D004978 ORTHO05D005621 1.2e-44 184.1 200 52.5
PGSC0003DMG400019310 Solanum tuberosum HOM05D004978 ORTHO05D005621 2.0e-44 183.3 193 53.9
VMungo0720G1640 Vigna mungo HOM05D004978 ORTHO05D005621 5.7e-44 181.8 187 55.1
CANSAT25G0263 Cannabis sativa HOM05D004978 ORTHO05D005621 2.2e-43 179.9 202 49.5
CAN.G433.6 Capsicum annuum HOM05D004978 ORTHO05D005621 2.2e-43 179.9 200 50.5
Sc05g0001300 Simmondsia chinensis HOM05D004978 ORTHO05D005621 3.7e-43 179.1 160 58.8
MD03G1258100 Malus domestica HOM05D004978 ORTHO05D005621 6.3e-43 178.3 153 58.2
ECA236G1829 Erigeron canadensis HOM05D004978 ORTHO05D005621 1.8e-42 176.8 165 55.2
SGA_v2.0_scaffold1G00534 Striga asiatica HOM05D004978 ORTHO05D005621 5.4e-42 175.3 154 57.8
TWI12G0244 Tripterygium wilfordii HOM05D004978 ORTHO05D005621 7.0e-42 174.9 185 51.9
Phvul.007G175000 Phaseolus vulgaris HOM05D004978 ORTHO05D005621 2.0e-41 173.3 182 54.4
Lalb_Chr02g0142521 Lupinus albus HOM05D004978 ORTHO05D005621 5.0e-40 168.7 205 47.8
ClCG09G007410 Citrullus lanatus HOM05D004978 ORTHO05D005621 8.6e-40 167.9 180 51.1
Sed0003895 Sechium edule HOM05D004978 ORTHO05D005621 8.6e-40 167.9 180 52.2
Sed0016751 Sechium edule HOM05D004978 ORTHO05D005621 1.1e-39 167.5 179 50.8
PGR044G1133 Punica granatum HOM05D004978 ORTHO05D005621 1.9e-39 166.8 182 51.6
Psat6g058480 Pisum sativum HOM05D004978 ORTHO05D005621 7.3e-39 164.9 205 47.3
MELO3C015807.2 Cucumis melo HOM05D004978 ORTHO05D005621 1.2e-38 164.1 182 48.4
Ca_09727_v3 Cicer arietinum L. HOM05D004978 ORTHO05D005621 1.6e-38 163.7 205 45.4
CsaV3_7G027890 Cucumis sativus L. HOM05D004978 ORTHO05D005621 2.8e-38 162.9 209 48.3
PSO210G1189 Papaver somniferum HOM05D004978 ORTHO05D005621 6.1e-38 161.8 183 47.5
Aa31LG9G14570 Aethionema arabicum HOM05D004978 ORTHO05D005621 1.4e-37 160.6 171 52.6
PSO832G2480 Papaver somniferum HOM05D004978 ORTHO05D005621 2.3e-37 159.8 184 46.2
AUR62011971 Chenopodium quinoa HOM05D004978 ORTHO05D005621 6.8e-37 158.3 238 42.4
AL6G31360 Arabidopsis lyrata HOM05D004978 ORTHO05D005621 1.7e-35 153.7 210 43.3
AUR62032283 Chenopodium quinoa HOM05D004978 ORTHO05D005621 4.9e-35 152.1 240 41.2
A03p09660 Brassica napus HOM05D004978 ORTHO05D005621 6.4e-35 151.8 154 50.6
Thhalv10013262m.g Eutrema salsugineum HOM05D004978 ORTHO05D005621 8.3e-35 151.4 208 44.2
BcaB01g04842 Brassica carinata HOM05D004978 ORTHO05D005621 1.4e-34 150.6 164 48.2
C03p11220 Brassica napus HOM05D004978 ORTHO05D005621 1.4e-34 150.6 160 48.1
BolC3t13593H Brassica oleracea HOM05D004978 ORTHO05D005621 1.4e-34 150.6 160 48.1
BcaB01g04828 Brassica carinata HOM05D004978 ORTHO05D005621 4.1e-34 149.1 160 47.5
CARHR193040 Cardamine hirsuta HOM05D004978 ORTHO05D005621 4.1e-34 149.1 184 46.2
Eucgr.K03324 Eucalyptus grandis HOM05D004978 ORTHO05D005621 7.0e-34 148.3 184 45.7
Sp6g24570 Schrenkiella parvula HOM05D004978 ORTHO05D005621 2.7e-33 146.4 199 43.7
Carub.0006s1819 Capsella rubella HOM05D004978 ORTHO05D005621 1.0e-32 144.4 177 45.2
unitig_0.g1132 Utricularia gibba HOM05D004978 ORTHO05D005621 1.3e-32 144.1 194 44.8
CDE02G4319 Ceratophyllum demersum HOM05D004978 ORTHO05D005621 1.7e-32 143.7 154 50.6
Zm00001eb370120 Zea mays HOM05D004978 ORTHO05D005621 6.6e-32 141.7 160 48.8
AT5G19840 Arabidopsis thaliana HOM05D004978 ORTHO05D005621 8.6e-32 141.4 210 41.4
BraA03t10282Z Brassica rapa HOM05D004978 ORTHO05D005621 1.1e-31 141.0 171 45.6
ATR0665G047 Amborella trichopoda HOM05D004978 ORTHO05D005621 3.3e-31 139.4 156 49.4
CSS0039116 Camellia sinensis var. sinensis HOM05D004978 ORTHO05D005621 2.0e-28 130.2 136 51.5
HPP92_022057 Vanilla planifolia HOM05D004978 ORTHO05D005621 8.3e-27 124.8 154 46.1
Ah.11g050220 Amaranthus hybridus HOM05D004978 ORTHO05D005621 7.0e-26 121.7 206 39.3
Duzib133G0140 Durio zibethinus HOM05D004978 ORTHO05D005621 3.0e-24 116.3 74 73.0
Hund09547 Selenicereus undatus HOM05D004978 ORTHO05D005621 6.6e-24 115.2 206 39.3
TAR636G2873 Trochodendron aralioides HOM05D004978 ORTHO05D005621 2.5e-23 113.2 72 76.4
Prupe.8G234700 Prunus persica HOM05D004978 ORTHO05D005621 7.3e-23 111.7 69 78.3
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 2.8e-22 109.8 97 54.6
TPR.G34891 Trifolium pratense HOM05D004978 ORTHO05D005621 4.7e-22 109.0 73 69.9
Glyma.02G144333 Glycine max HOM05D004978 ORTHO05D005621 1.8e-21 107.1 70 71.4
SMO367G0146 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 3.1e-21 106.3 93 55.9
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 5.2e-21 105.5 97 53.6
QL05p031917 Quercus lobata HOM05D000015 ORTHO05D005621 1.2e-17 94.4 116 44.0
SEGI_31795 Sequoiadendron giganteum HOM05D004978 ORTHO05D005621 2.1e-17 93.6 83 50.6
Lalb_Chr06g0162781 Lupinus albus HOM05D004978 ORTHO05D005621 4.6e-17 92.4 64 65.6
MBI11_g08089_MAGBIO Magnolia biondii HOM05D004978 ORTHO05D005621 1.6e-14 84.0 137 40.1
Mapoly0003s0071 Marchantia polymorpha HOM05D004978 ORTHO05D005621 3.6e-14 82.8 162 34.0
Pp3c26_13750 Physcomitrium patens HOM05D004978 ORTHO05D005621 3.6e-14 82.8 92 46.7
Potri.002G047875 Populus trichocarpa HOM05D004978 ORTHO05D005621 1.1e-13 81.3 116 39.7
Dinv22502 Davidia involucrata HOM05D004978 ORTHO05D005621 1.5e-12 77.4 143 39.2
AagrBONN_evm.TU.Sc2ySwM_117.2029 Anthoceros agrestis HOM05D004978 ORTHO05D005621 3.2e-10 69.7 87 36.8
CSS0038001 Camellia sinensis var. sinensis HOM05D004978 ORTHO05D005621 3.3e-07 59.7 52 57.7
TPR.G21102 Trifolium pratense HOM05D004978 ORTHO05D005621 9.6e-07 58.2 117 36.8
TPR.G21665 Trifolium pratense HOM05D004978 ORTHO05D005621 4.7e-06 55.8 109 38.5


User provided reference genes

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