Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 2.4e-176 622.1 315 100.0
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 4.5e-135 485.0 318 77.7
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 4.5e-135 485.0 318 76.1
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 5.5e-133 478.0 324 73.1
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.6e-132 476.5 326 76.1
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 8.0e-132 474.2 311 76.2
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.4e-131 473.4 302 78.5
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 2.3e-131 472.6 319 76.8
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 5.2e-131 471.5 319 75.2
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 5.2e-131 471.5 319 76.5
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 1.2e-130 470.3 299 79.3
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 2.0e-130 469.5 314 73.9
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 2.0e-130 469.5 315 73.3
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 2.0e-130 469.5 318 74.5
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 2.0e-130 469.5 315 73.7
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 2.6e-130 469.2 316 74.1
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 5.7e-130 468.0 319 76.2
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 7.5e-130 467.6 305 77.7
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 9.7e-130 467.2 317 72.6
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 2.2e-129 466.1 328 70.1
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 3.7e-129 465.3 316 73.7
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 4.8e-129 464.9 316 73.4
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 6.3e-129 464.5 317 74.1
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 1.4e-128 463.4 315 73.3
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 2.4e-128 462.6 317 72.2
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 2.4e-128 462.6 315 75.2
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 2.4e-128 462.6 317 75.1
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 5.3e-128 461.5 317 71.6
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 7.0e-128 461.1 315 72.4
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 1.6e-127 459.9 315 73.0
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 2.0e-127 459.5 310 74.8
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 2.0e-127 459.5 321 72.9
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 2.7e-127 459.1 318 72.3
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 4.5e-127 458.4 313 74.1
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 4.5e-127 458.4 315 73.7
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 7.7e-127 457.6 315 72.1
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 1.0e-126 457.2 315 73.0
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 1.7e-126 456.4 312 72.1
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 2.9e-126 455.7 316 72.5
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 2.9e-126 455.7 312 72.4
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 3.8e-126 455.3 310 71.3
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 5.0e-126 454.9 322 71.4
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 5.0e-126 454.9 322 71.4
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 8.5e-126 454.1 315 72.7
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 1.5e-125 453.4 314 73.2
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.5e-125 453.4 319 73.7
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 1.5e-125 453.4 317 74.1
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 2.5e-125 452.6 319 71.5
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 5.5e-125 451.4 322 71.1
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 9.4e-125 450.7 312 72.4
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 9.4e-125 450.7 315 74.0
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 2.7e-124 449.1 315 72.7
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 3.6e-124 448.7 314 73.6
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 6.1e-124 448.0 312 69.9
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 3.0e-123 445.7 313 71.6
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 1.2e-122 443.7 316 71.8
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 1.2e-122 443.7 323 71.5
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 2.0e-122 443.0 312 71.5
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 2.0e-122 443.0 313 71.6
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 3.4e-122 442.2 316 71.8
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.3e-121 440.3 317 69.7
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 1.7e-121 439.9 314 70.7
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 1.7e-121 439.9 322 69.6
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 2.8e-121 439.1 314 70.1
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 2.8e-121 439.1 312 70.2
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 1.1e-120 437.2 318 69.5
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 1.4e-120 436.8 314 68.8
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 1.8e-120 436.4 315 69.5
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 4.1e-120 435.3 315 69.8
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 5.4e-120 434.9 309 70.6
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 7.0e-120 434.5 316 67.7
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 7.0e-120 434.5 318 69.2
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 7.0e-120 434.5 315 67.6
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 9.1e-120 434.1 316 68.4
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 1.6e-119 433.3 342 65.5
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 1.6e-119 433.3 317 69.1
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 2.0e-119 433.0 318 68.6
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 2.7e-119 432.6 314 68.5
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 5.9e-119 431.4 315 71.4
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 1.1e-117 427.2 338 65.1
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 1.9e-117 426.4 318 68.6
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 4.2e-117 425.2 317 67.5
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 1.6e-116 423.3 311 69.5
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.6e-116 423.3 309 69.3
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 8.0e-116 421.0 311 67.8
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.0e-115 420.6 325 66.5
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 1.0e-115 420.6 306 69.0
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 5.2e-115 418.3 282 72.7
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 2.8e-113 412.5 315 67.6
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 8.9e-107 391.0 317 63.1
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 1.7e-105 386.7 312 65.4
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 7.0e-104 381.3 303 65.7
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 9.2e-104 380.9 333 58.9
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 1.2e-103 380.6 279 69.2
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 7.3e-101 371.3 317 61.5
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 8.0e-100 367.9 377 54.9
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 4.4e-98 362.1 301 62.1
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 1.6e-95 353.6 306 59.8
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.0e-94 350.9 230 74.3
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.7e-94 350.1 306 57.5
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 7.3e-93 344.7 236 74.2
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 1.1e-91 340.9 306 57.5
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 5.2e-91 338.6 305 55.4
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.3e-89 334.0 306 57.2
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 1.6e-84 317.0 233 69.5
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 4.7e-84 315.5 279 60.6
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 2.4e-83 313.2 352 48.6
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 2.2e-73 280.0 197 67.5
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 1.7e-70 270.4 337 46.0
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 3.0e-70 269.6 234 57.7
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 2.8e-68 263.1 190 65.8
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 4.5e-66 255.8 189 68.3
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 9.3e-64 248.1 208 62.0
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 2.9e-49 199.9 222 48.6
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 2.9e-49 199.9 156 63.5
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 2.9e-49 199.9 162 63.0
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 7.1e-48 195.3 234 50.9
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 2.8e-44 183.3 292 39.7
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 3.4e-42 176.4 106 78.3
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.2e-39 167.9 194 53.6
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 3.9e-38 162.9 300 38.0
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 2.0e-34 150.6 307 36.8
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 4.2e-32 142.9 124 63.7
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 7.0e-27 125.6 121 59.5
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.4e-22 111.3 83 67.5
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 5.2e-22 109.4 121 54.5
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 2.2e-20 104.0 164 43.9
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 3.7e-20 103.2 73 69.9
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 1.8e-19 100.9 70 67.1
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 2.4e-19 100.5 75 65.3
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 9.1e-19 98.6 111 47.7
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.6e-18 97.8 149 38.3
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 2.6e-18 97.1 116 47.4
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 2.9e-17 93.6 66 65.2
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.9e-16 90.9 61 75.4
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 1.0e-14 85.1 89 52.8
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 4.0e-14 83.2 81 59.3
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 1.7e-12 77.8 60 65.0
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 2.4e-11 73.9 83 50.6
A02p37740 Brassica napus HOM05D026193 ORTHO05D028104 2.1e-07 60.8 200 30.5
arahy.Tifrunner.gnm1.ann1.6Q4MDY Arachis hypogaea HOM05D005470 ORTHO05D038880 3.6e-07 60.1 45 64.4
BraA02t08756Z Brassica rapa HOM05D026193 ORTHO05D028104 3.6e-07 60.1 200 30.5


User provided reference genes

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