Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A112T40 Lonicera japonica HOM05D006467 ORTHO05D008012 3.3e-60 235.0 126 100.0
Hma1.2p1_0614F.1_g189470 Hydrangea macrophylla HOM05D006467 ORTHO05D008012 1.9e-39 166.0 122 67.2
Dinv35757 Davidia involucrata HOM05D006467 ORTHO05D008012 4.1e-39 164.9 123 69.1
GSVIVG01025685001 Vitis vinifera HOM05D006467 ORTHO05D008012 9.2e-39 163.7 114 71.9
CSS0042234 Camellia sinensis var. sinensis HOM05D006467 ORTHO05D008012 1.2e-38 163.3 123 69.1
FAN09G2873 Fragaria x ananassa HOM05D006467 ORTHO05D008012 1.2e-38 163.3 122 73.8
TAR369G0155 Trochodendron aralioides HOM05D006467 ORTHO05D008012 2.7e-38 162.2 124 66.9
Lsat_1_v5_gn_2_109060 Lactuca sativa HOM05D006467 ORTHO05D008012 7.8e-38 160.6 124 66.1
RcHm_v2.0_Chr3g0469601 Rosa chinensis HOM05D006467 ORTHO05D008012 1.3e-37 159.8 121 71.9
TAR623G0732 Trochodendron aralioides HOM05D006467 ORTHO05D008012 1.3e-37 159.8 124 63.7
Dinv35529 Davidia involucrata HOM05D006467 ORTHO05D008012 1.7e-37 159.5 123 69.1
Peaxi162Scf00123g00014 Petunia axillaris HOM05D006467 ORTHO05D008012 3.0e-37 158.7 123 67.5
FAN02G4276 Fragaria x ananassa HOM05D006467 ORTHO05D008012 5.1e-37 157.9 122 71.3
Oeu059967.1 Olea europaea HOM05D006467 ORTHO05D008012 6.6e-37 157.5 123 65.0
FAN14G3947 Fragaria x ananassa HOM05D006467 ORTHO05D008012 1.5e-36 156.4 122 68.9
Actinidia19675 Actinidia chinensis HOM05D006467 ORTHO05D008012 2.5e-36 155.6 121 65.3
Prupe.6G236600 Prunus persica HOM05D006467 ORTHO05D008012 2.5e-36 155.6 122 66.4
Nn2g13105 Nelumbo nucifera HOM05D006467 ORTHO05D008012 3.3e-36 155.2 124 61.3
Nitab4.5_0003923g0010 Nicotiana tabacum HOM05D006467 ORTHO05D008012 5.6e-36 154.5 123 67.5
CiPaw.09G176000 Carya illinoinensis HOM05D006467 ORTHO05D008012 2.8e-35 152.1 122 64.8
Sc02g0001830 Simmondsia chinensis HOM05D006467 ORTHO05D008012 3.6e-35 151.8 119 67.2
QL07p044433 Quercus lobata HOM05D006467 ORTHO05D008012 4.7e-35 151.4 121 67.8
Cfa017565 Carpinus fangiana HOM05D006467 ORTHO05D008012 8.1e-35 150.6 122 63.9
Nitab4.5_0000101g0130 Nicotiana tabacum HOM05D006467 ORTHO05D008012 1.1e-34 150.2 123 64.2
Ciclev10013106m.g Citrus clementina HOM05D006467 ORTHO05D008012 1.4e-34 149.8 120 63.3
ECA238G0062 Erigeron canadensis HOM05D006467 ORTHO05D008012 1.8e-34 149.4 124 61.3
FvH4_6g15910 Fragaria vesca HOM05D006467 ORTHO05D008012 1.8e-34 149.4 129 65.1
MD04G1097300 Malus domestica HOM05D006467 ORTHO05D008012 4.0e-34 148.3 122 63.1
Aqoxy1G01232 Aquilegia oxysepala HOM05D006467 ORTHO05D008012 5.2e-34 147.9 122 57.4
Nn2g10804 Nelumbo nucifera HOM05D006467 ORTHO05D008012 5.2e-34 147.9 124 58.9
Sopen09g002640 Solanum pennellii HOM05D006467 ORTHO05D008012 5.2e-34 147.9 123 64.2
EL10Ac7g16554 Beta vulgaris HOM05D006467 ORTHO05D008012 1.2e-33 146.7 124 60.5
PGSC0003DMG400021546 Solanum tuberosum HOM05D006467 ORTHO05D008012 1.2e-33 146.7 123 64.2
Solyc09g007800.3 Solanum lycopersicum HOM05D006467 ORTHO05D008012 1.5e-33 146.4 123 63.4
MD12G1118700 Malus domestica HOM05D006467 ORTHO05D008012 2.0e-33 146.0 122 63.1
CAN.G888.4 Capsicum annuum HOM05D006467 ORTHO05D008012 4.4e-33 144.8 120 64.2
Potri.016G090000 Populus trichocarpa HOM05D006467 ORTHO05D008012 5.8e-33 144.4 119 63.9
MSTRG.19165 Avicennia marina HOM05D006467 ORTHO05D008012 1.3e-32 143.3 122 58.2
Manes.08G007300 Manihot esculenta HOM05D006467 ORTHO05D008012 1.7e-32 142.9 119 63.9
Glyma.10G053300 Glycine max HOM05D006467 ORTHO05D008012 2.9e-32 142.1 120 64.2
TPR.G21203 Trifolium pratense HOM05D006467 ORTHO05D008012 2.9e-32 142.1 122 61.5
Lj5g0010745 Lotus japonicus HOM05D006467 ORTHO05D008012 6.4e-32 141.0 120 63.3
PSO063G5019 Papaver somniferum HOM05D006467 ORTHO05D008012 6.4e-32 141.0 122 55.7
PSO339G1849 Papaver somniferum HOM05D006467 ORTHO05D008012 6.4e-32 141.0 122 55.7
Thecc.05G060700 Theobroma cacao HOM05D006467 ORTHO05D008012 6.4e-32 141.0 119 60.5
HanXRQChr07g0195271 Helianthus annuus HOM05D006467 ORTHO05D008012 1.4e-31 139.8 124 58.9
Potri.006G127800 Populus trichocarpa HOM05D006467 ORTHO05D008012 1.4e-31 139.8 119 63.0
Cpa.g.sc102.12 Carica papaya HOM05D006467 ORTHO05D008012 1.9e-31 139.4 119 60.5
CANSAT80G0273 Cannabis sativa HOM05D006467 ORTHO05D008012 3.2e-31 138.7 119 59.7
Migut.J00532 Erythranthe guttata HOM05D006467 ORTHO05D008012 3.2e-31 138.7 120 61.7
TWI77G0724 Tripterygium wilfordii HOM05D006467 ORTHO05D008012 5.4e-31 137.9 119 59.7
Gohir.D09G145300 Gossypium hirsutum HOM05D006467 ORTHO05D008012 7.1e-31 137.5 119 60.5
Glyma.13G140300 Glycine max HOM05D006467 ORTHO05D008012 9.2e-31 137.1 120 61.7
VMungo0720G0455 Vigna mungo HOM05D006467 ORTHO05D008012 9.2e-31 137.1 120 60.0
Medtr1g064490 Medicago truncatula HOM05D006467 ORTHO05D008012 1.2e-30 136.7 121 60.3
SGA_v2.0_scaffold40G15542 Striga asiatica HOM05D006467 ORTHO05D008012 1.2e-30 136.7 132 56.8
SalBow8G4982 Salvia bowleyana HOM05D006467 ORTHO05D008012 1.6e-30 136.3 122 59.0
Gohir.A04G074100 Gossypium hirsutum HOM05D006467 ORTHO05D008012 2.1e-30 136.0 119 60.5
Ca_11474_v3 Cicer arietinum L. HOM05D006467 ORTHO05D008012 2.7e-30 135.6 121 59.5
Cc06_g03930 Coffea canephora HOM05D006467 ORTHO05D008012 3.5e-30 135.2 114 61.4
Atru.chr8.1867 Acer truncatum HOM05D006467 ORTHO05D008012 4.6e-30 134.8 120 57.5
Sabra16G0095600 Salix brachista HOM05D006467 ORTHO05D008012 4.6e-30 134.8 136 55.9
AL4G33560 Arabidopsis lyrata HOM05D006467 ORTHO05D008012 1.3e-29 133.3 123 61.0
vmacro20032 Vaccinium macrocarpon HOM05D006467 ORTHO05D008012 1.7e-29 132.9 154 51.9
Gorai.009G417600 Gossypium raimondii HOM05D006467 ORTHO05D008012 2.3e-29 132.5 131 55.0
Carub.0004s1909 Capsella rubella HOM05D006467 ORTHO05D008012 6.6e-29 131.0 123 57.7
AUR62033514 Chenopodium quinoa HOM05D006467 ORTHO05D008012 8.6e-29 130.6 123 56.1
A03p20520 Brassica napus HOM05D006467 ORTHO05D008012 1.1e-28 130.2 123 59.3
BraA03t11294Z Brassica rapa HOM05D006467 ORTHO05D008012 1.1e-28 130.2 123 59.3
MBI07_g19293_MAGBIO Magnolia biondii HOM05D006467 ORTHO05D008012 1.1e-28 130.2 125 53.6
Gohir.A09G149400 Gossypium hirsutum HOM05D006467 ORTHO05D008012 1.5e-28 129.8 123 56.9
Lalb_Chr21g0314871 Lupinus albus HOM05D006467 ORTHO05D008012 1.5e-28 129.8 115 60.9
AT2G37195 Arabidopsis thaliana HOM05D006467 ORTHO05D008012 1.9e-28 129.4 123 58.5
COL.COLO4_27023 Corchorus olitorius HOM05D006467 ORTHO05D008012 1.9e-28 129.4 145 50.3
BcaC01g06644 Brassica carinata HOM05D006467 ORTHO05D008012 2.5e-28 129.0 123 58.5
Duzib128G1557 Durio zibethinus HOM05D006467 ORTHO05D008012 2.5e-28 129.0 119 58.0
Ah.15g092380 Amaranthus hybridus HOM05D006467 ORTHO05D008012 3.3e-28 128.6 122 55.7
Phvul.007G220100 Phaseolus vulgaris HOM05D006467 ORTHO05D008012 5.6e-28 127.9 119 56.3
C03p24120 Brassica napus HOM05D006467 ORTHO05D008012 7.3e-28 127.5 123 57.7
AUR62028561 Chenopodium quinoa HOM05D006467 ORTHO05D008012 7.3e-28 127.5 120 55.8
Gorai.006G166500 Gossypium raimondii HOM05D006467 ORTHO05D008012 7.3e-28 127.5 134 53.7
Sp4g19510 Schrenkiella parvula HOM05D006467 ORTHO05D008012 7.3e-28 127.5 123 57.7
Sed0017827 Sechium edule HOM05D006467 ORTHO05D008012 1.2e-27 126.7 123 56.9
BolC3t14804H Brassica oleracea HOM05D006467 ORTHO05D008012 3.6e-27 125.2 123 55.3
MELO3C009340.2 Cucumis melo HOM05D006467 ORTHO05D008012 6.2e-27 124.4 122 52.5
Thhalv10017389m.g Eutrema salsugineum HOM05D006467 ORTHO05D008012 6.2e-27 124.4 123 56.1
CsaV3_3G035800 Cucumis sativus L. HOM05D006467 ORTHO05D008012 8.1e-27 124.0 122 53.3
THA.LOC104823447 Tarenaya hassleriana HOM05D006467 ORTHO05D008012 1.8e-26 122.9 119 57.1
arahy.Tifrunner.gnm1.ann1.HNS49Q Arachis hypogaea HOM05D006467 ORTHO05D008012 2.4e-26 122.5 123 52.0
arahy.Tifrunner.gnm1.ann1.RH0WXQ Arachis hypogaea HOM05D006467 ORTHO05D008012 2.4e-26 122.5 123 52.0
arahy.Tifrunner.gnm1.ann1.VPUZ6C Arachis hypogaea HOM05D006467 ORTHO05D008012 2.4e-26 122.5 123 52.0
Aa31LG5G22520 Aethionema arabicum HOM05D006467 ORTHO05D008012 2.0e-25 119.4 123 54.5
CARHR131710 Cardamine hirsuta HOM05D006467 ORTHO05D008012 2.0e-25 119.4 113 59.3
ClCG10G020300 Citrullus lanatus HOM05D006467 ORTHO05D008012 7.6e-25 117.5 122 50.0
PGR142G2369 Punica granatum HOM05D006467 ORTHO05D008012 2.2e-24 115.9 122 51.6
Sabra06G0100500 Salix brachista HOM05D006467 ORTHO05D008012 2.4e-23 112.5 152 45.4
Gohir.D04G113200 Gossypium hirsutum HOM05D006467 ORTHO05D008012 4.2e-23 111.7 96 59.4
Dinv37285 Davidia involucrata HOM05D006467 ORTHO05D008012 1.0e-21 107.1 76 64.5
DCAR_009295 Daucus carota HOM05D006467 ORTHO05D008012 5.1e-21 104.8 73 64.4
Eucgr.K03249 Eucalyptus grandis HOM05D006467 ORTHO05D008012 1.1e-20 103.6 96 55.2
Haze_20589 Corylus avellana HOM05D006467 ORTHO05D008012 7.3e-20 100.9 72 66.7
Psat6g070840 Pisum sativum HOM05D006467 ORTHO05D008012 8.1e-19 97.4 69 69.6
Hund20246 Selenicereus undatus HOM05D006467 ORTHO05D008012 8.1e-19 97.4 74 58.1
FvH4_1g27957 Fragaria vesca HOM05D000871 ORTHO05D008012 1.5e-17 93.2 115 53.0
ATR0048G054 Amborella trichopoda HOM05D006467 ORTHO05D008012 6.4e-16 87.8 97 46.4
HPP92_022407 Vanilla planifolia HOM05D006467 ORTHO05D008012 4.2e-15 85.1 113 43.4
HPP92_027503 Vanilla planifolia HOM05D006467 ORTHO05D008012 5.4e-15 84.7 113 42.5
FvH4_1g28030 Fragaria vesca HOM05D000871 ORTHO05D008012 7.9e-14 80.9 92 54.3
Zm00001eb191980 Zea mays HOM05D006467 ORTHO05D008012 1.3e-13 80.1 114 42.1
unitig_27.g25371 Utricularia gibba HOM05D006467 ORTHO05D008012 6.6e-13 77.8 98 41.8
Zm00001eb258270 Zea mays HOM05D006467 ORTHO05D008012 1.1e-12 77.0 114 40.4
BcaC03g13318 Brassica carinata HOM05D006467 ORTHO05D008012 1.1e-10 70.5 100 43.0
BcaC03g13319 Brassica carinata HOM05D006467 ORTHO05D008012 1.1e-10 70.5 100 43.0
Os02g0805700 Oryza sativa ssp. japonica HOM05D006467 ORTHO05D008012 2.4e-10 69.3 114 36.8
C07p17010 Brassica napus HOM05D006467 ORTHO05D008012 1.3e-08 63.5 89 42.7
C02p04540 Brassica napus HOM05D006467 ORTHO05D008012 2.2e-08 62.8 89 42.7
C06p12980 Brassica napus HOM05D006467 ORTHO05D008012 6.4e-08 61.2 91 41.8
Actinidia40026 Actinidia chinensis HOM05D006467 ORTHO05D008012 8.4e-08 60.8 63 55.6
BolC1t01590H Brassica oleracea HOM05D006467 ORTHO05D008012 1.4e-07 60.1 89 41.6
FAN26G0965 Fragaria x ananassa HOM05D000871 ORTHO05D011596 3.2e-07 58.9 66 50.0
PSO063G7135 Papaver somniferum HOM05D000530 ORTHO05D000621 7.1e-07 57.8 40 62.5
BcaC08g43911 Brassica carinata HOM05D006467 ORTHO05D008012 3.5e-06 55.5 47 57.4


User provided reference genes

Program Settings