Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A1114T35 Lonicera japonica HOM05D001360 ORTHO05D234572 7.3e-81 303.9 162 100.0
Lj2P1113T11 Lonicera japonica HOM05D001360 ORTHO05D001231 1.7e-40 169.9 196 55.6
Lj1P369T2 Lonicera japonica HOM05D001360 ORTHO05D001231 8.2e-40 167.5 194 56.2
Lj2P1112T35 Lonicera japonica HOM05D001360 ORTHO05D001231 1.8e-34 149.8 177 54.2
Lj2P1114T21 Lonicera japonica HOM05D001360 ORTHO05D001231 1.8e-34 149.8 166 53.6
Lj2P1113T8 Lonicera japonica HOM05D001360 ORTHO05D001231 6.3e-24 114.8 147 50.3
Lj1P370T8 Lonicera japonica HOM05D001360 ORTHO05D001231 2.7e-22 109.4 121 55.4
Lj2E1114T0 Lonicera japonica HOM05D001360 ORTHO05D001231 3.2e-20 102.4 198 40.9
Actinidia23349 Actinidia chinensis HOM05D001360 ORTHO05D001231 6.1e-11 71.6 165 37.6
CANSAT01G1149 Cannabis sativa HOM05D001360 ORTHO05D001231 6.1e-11 71.6 168 36.3
Ciclev10016823m.g Citrus clementina HOM05D001360 ORTHO05D001231 1.0e-10 70.9 164 37.8
Sabra14G0134900 Salix brachista HOM05D001360 ORTHO05D001231 1.0e-10 70.9 169 36.7
Dinv10451 Davidia involucrata HOM05D001360 ORTHO05D001231 2.3e-10 69.7 196 35.7
Prupe.8G188200 Prunus persica HOM05D001360 ORTHO05D001231 2.3e-10 69.7 172 34.9
MD05G1156100 Malus domestica HOM05D001360 ORTHO05D001231 3.0e-10 69.3 173 35.3
Actinidia29999 Actinidia chinensis HOM05D001360 ORTHO05D001231 4.0e-10 68.9 165 37.0
Cc01_g15940 Coffea canephora HOM05D001360 ORTHO05D001231 4.0e-10 68.9 168 34.5
Lalb_Chr03g0040971 Lupinus albus HOM05D001360 ORTHO05D001231 4.0e-10 68.9 195 33.3
QL09p047536 Quercus lobata HOM05D001360 ORTHO05D001231 5.2e-10 68.6 182 34.6
SalBow1G0984 Salvia bowleyana HOM05D001360 ORTHO05D001231 5.2e-10 68.6 165 36.4
SalBow3G1192 Salvia bowleyana HOM05D001360 ORTHO05D001231 5.2e-10 68.6 165 36.4
vmacro02835 Vaccinium macrocarpon HOM05D001360 ORTHO05D001231 5.2e-10 68.6 169 36.1
ATR0661G007 Amborella trichopoda HOM05D001360 ORTHO05D001231 6.8e-10 68.2 171 33.9
DCAR_018615 Daucus carota HOM05D001360 ORTHO05D001231 6.8e-10 68.2 166 36.1
RcHm_v2.0_Chr6g0282541 Rosa chinensis HOM05D001360 ORTHO05D001231 6.8e-10 68.2 174 36.8
CSS0034994 Camellia sinensis var. sinensis HOM05D001360 ORTHO05D001231 1.2e-09 67.4 197 32.0
Gorai.001G102000 Gossypium raimondii HOM05D001360 ORTHO05D001231 1.2e-09 67.4 184 34.8
HanXRQChr08g0231831 Helianthus annuus HOM05D001360 ORTHO05D001231 1.5e-09 67.0 169 35.5
Solyc09g047930.1 Solanum lycopersicum HOM05D001360 ORTHO05D001231 1.5e-09 67.0 166 36.7
Sopen09g016040 Solanum pennellii HOM05D001360 ORTHO05D001231 1.5e-09 67.0 166 36.7
PGSC0003DMG400029171 Solanum tuberosum HOM05D001360 ORTHO05D001231 1.5e-09 67.0 166 36.7
Thecc.01G208800 Theobroma cacao HOM05D001360 ORTHO05D001231 1.5e-09 67.0 179 35.2
Migut.N00677 Erythranthe guttata HOM05D001360 ORTHO05D001231 2.0e-09 66.6 165 35.8
Lsat_1_v5_gn_9_16561 Lactuca sativa HOM05D001360 ORTHO05D001231 2.0e-09 66.6 169 34.9
Nitab4.5_0000038g0200 Nicotiana tabacum HOM05D001360 ORTHO05D001231 2.0e-09 66.6 185 36.2
SGA_v2.0_scaffold77G25308 Striga asiatica HOM05D001360 ORTHO05D001231 2.0e-09 66.6 165 36.4
ECA248G1556 Erigeron canadensis HOM05D001360 ORTHO05D001231 2.6e-09 66.2 165 35.2
Gohir.D07G094700 Gossypium hirsutum HOM05D001360 ORTHO05D001231 2.6e-09 66.2 198 32.8
Lsat_1_v5_gn_5_176620 Lactuca sativa HOM05D001360 ORTHO05D001231 2.6e-09 66.2 169 34.3
MD10G1149800 Malus domestica HOM05D001360 ORTHO05D001231 2.6e-09 66.2 172 34.3
Nitab4.5_0005686g0040 Nicotiana tabacum HOM05D001360 ORTHO05D001231 2.6e-09 66.2 185 36.2
Sabra02G0182400 Salix brachista HOM05D000001 ORTHO05D000003 2.6e-09 66.2 169 36.1
unitig_0.g1226 Utricularia gibba HOM05D001360 ORTHO05D001231 2.6e-09 66.2 170 35.3
Cpa.g.sc8.50 Carica papaya HOM05D001360 ORTHO05D001231 3.4e-09 65.9 170 34.7
Eucgr.K02084 Eucalyptus grandis HOM05D001360 ORTHO05D001231 3.4e-09 65.9 182 36.8
Gohir.A07G090000 Gossypium hirsutum HOM05D001360 ORTHO05D001231 3.4e-09 65.9 166 36.1
MELO3C015727.2 Cucumis melo HOM05D001360 ORTHO05D001231 4.4e-09 65.5 170 34.7
DCAR_008397 Daucus carota HOM05D001360 ORTHO05D001231 4.4e-09 65.5 168 35.1
FvH4_2g17600 Fragaria vesca HOM05D001360 ORTHO05D001231 4.4e-09 65.5 170 34.7
FAN15G0553 Fragaria x ananassa HOM05D001360 ORTHO05D001231 4.4e-09 65.5 170 34.7
FAN15G1977 Fragaria x ananassa HOM05D001360 ORTHO05D001231 4.4e-09 65.5 170 34.7
FAN27G0972 Fragaria x ananassa HOM05D001360 ORTHO05D001231 4.4e-09 65.5 170 34.7
FAN27G1413 Fragaria x ananassa HOM05D001360 ORTHO05D001231 4.4e-09 65.5 170 34.7
Manes.13G055900 Manihot esculenta HOM05D001360 ORTHO05D001231 5.7e-09 65.1 165 35.2
Sed0025553 Sechium edule HOM05D001360 ORTHO05D001231 5.7e-09 65.1 170 34.7
ClCG09G007830 Citrullus lanatus HOM05D001360 ORTHO05D001231 7.5e-09 64.7 195 32.3
Dinv28798 Davidia involucrata HOM05D001360 ORTHO05D001231 7.5e-09 64.7 165 38.8
Duzib211G0121 Durio zibethinus HOM05D001360 ORTHO05D001231 7.5e-09 64.7 179 33.5
CAN.G253.3 Capsicum annuum HOM05D001360 ORTHO05D001231 9.8e-09 64.3 166 36.1
FAN24G2010 Fragaria x ananassa HOM05D001360 ORTHO05D001231 9.8e-09 64.3 181 34.3
A05p40700 Brassica napus HOM05D001360 ORTHO05D001231 1.3e-08 63.9 165 36.4
BraA05t22801Z Brassica rapa HOM05D001360 ORTHO05D001231 1.3e-08 63.9 165 36.4
MBI19_g20928_MAGBIO Magnolia biondii HOM05D001360 ORTHO05D001231 1.3e-08 63.9 163 35.0
MD05G1155900 Malus domestica HOM05D001360 ORTHO05D001231 1.3e-08 63.9 171 33.9
Potri.014G176000 Populus trichocarpa HOM05D001360 ORTHO05D001231 1.3e-08 63.9 166 34.9
CSS0047701 Camellia sinensis var. sinensis HOM05D001360 ORTHO05D001231 1.7e-08 63.5 184 32.6
Gohir.D11G149800 Gossypium hirsutum HOM05D001360 ORTHO05D001231 1.7e-08 63.5 179 33.5
Gorai.007G160700 Gossypium raimondii HOM05D001360 ORTHO05D001231 1.7e-08 63.5 179 33.5
MBI04_g26965_MAGBIO Magnolia biondii HOM05D001360 ORTHO05D001231 1.7e-08 63.5 163 35.0
Potri.002G239500 Populus trichocarpa HOM05D001360 ORTHO05D001231 1.7e-08 63.5 186 33.9
AL3G18830 Arabidopsis lyrata HOM05D001360 ORTHO05D001231 2.2e-08 63.2 188 33.5
MSTRG.12746 Avicennia marina HOM05D001360 ORTHO05D001231 2.2e-08 63.2 165 34.5
CSS0036779 Camellia sinensis var. sinensis HOM05D001360 ORTHO05D001231 2.2e-08 63.2 163 34.4
CARHR082160 Cardamine hirsuta HOM05D001360 ORTHO05D001231 2.2e-08 63.2 188 33.5
Glyma.18G154000 Glycine max HOM05D001360 ORTHO05D001231 2.2e-08 63.2 182 32.4
Gohir.A11G143400 Gossypium hirsutum HOM05D001360 ORTHO05D001231 2.2e-08 63.2 179 33.5
Lj2P1114T30 Lonicera japonica HOM05D001360 ORTHO05D001231 2.2e-08 63.2 170 34.7
MD05G1155400 Malus domestica HOM05D001360 ORTHO05D001231 2.2e-08 63.2 169 34.3
Peaxi162Scf00841g00032 Petunia axillaris HOM05D001360 ORTHO05D001231 2.2e-08 63.2 184 33.7
Rhsim13G0054500 Rhododendron simsii HOM05D001360 ORTHO05D001231 2.2e-08 63.2 166 34.9
TWI18G0104 Tripterygium wilfordii HOM05D001360 ORTHO05D001231 2.2e-08 63.2 165 35.2
VMungo1383G0442 Vigna mungo HOM05D001360 ORTHO05D001231 2.2e-08 63.2 168 33.3
BcaC05g29541 Brassica carinata HOM05D001360 ORTHO05D001231 2.8e-08 62.8 180 34.4
CiPaw.13G057500 Carya illinoinensis HOM05D001360 ORTHO05D001231 2.8e-08 62.8 164 34.8
CiPaw.14G045000 Carya illinoinensis HOM05D001360 ORTHO05D001231 2.8e-08 62.8 183 33.3
TAR633G1941 Trochodendron aralioides HOM05D001360 ORTHO05D001231 2.8e-08 62.8 169 35.5
arahy.Tifrunner.gnm1.ann1.H3Z9GC Arachis hypogaea HOM05D001360 ORTHO05D001231 3.7e-08 62.4 168 34.5
arahy.Tifrunner.gnm1.ann1.MSL63E Arachis hypogaea HOM05D001360 ORTHO05D001231 3.7e-08 62.4 168 34.5
Manes.12G060113 Manihot esculenta HOM05D001360 ORTHO05D001231 3.7e-08 62.4 165 34.5
PGR044G0829 Punica granatum HOM05D001360 ORTHO05D001231 3.7e-08 62.4 180 33.9
AUR62008073 Chenopodium quinoa HOM05D001360 ORTHO05D001231 4.9e-08 62.0 169 34.9
Thhalv10021445m.g Eutrema salsugineum HOM05D001360 ORTHO05D001231 4.9e-08 62.0 188 33.0
Medtr7g051210 Medicago truncatula HOM05D001360 ORTHO05D001231 4.9e-08 62.0 168 35.1
Phvul.008G137900 Phaseolus vulgaris HOM05D001360 ORTHO05D001231 4.9e-08 62.0 176 32.4
Psat3g151800 Pisum sativum HOM05D001360 ORTHO05D001231 6.3e-08 61.6 164 35.4
SEGI_27219 Sequoiadendron giganteum HOM05D001360 ORTHO05D001231 6.3e-08 61.6 170 34.1
THA.LOC104822465 Tarenaya hassleriana HOM05D001360 ORTHO05D001231 6.3e-08 61.6 165 36.4
Glyma.08G343000 Glycine max HOM05D001360 ORTHO05D001231 8.3e-08 61.2 176 33.0
Aa31LG4G9720 Aethionema arabicum HOM05D001360 ORTHO05D001231 1.1e-07 60.8 180 34.4
EL10Ac5g10593 Beta vulgaris HOM05D001360 ORTHO05D001231 1.1e-07 60.8 167 34.1
Gorai.N002200 Gossypium raimondii HOM05D001360 ORTHO05D001231 1.1e-07 60.8 179 32.4
PSO732G0065 Papaver somniferum HOM05D001360 ORTHO05D001231 1.1e-07 60.8 176 34.1
AT3G07510 Arabidopsis thaliana HOM05D001360 ORTHO05D001231 1.4e-07 60.5 190 32.1
AUR62028652 Chenopodium quinoa HOM05D001360 ORTHO05D001231 1.4e-07 60.5 169 34.3
Ca_07441_v3 Cicer arietinum L. HOM05D001360 ORTHO05D001231 1.4e-07 60.5 182 32.4
Gohir.D07G167900 Gossypium hirsutum HOM05D001360 ORTHO05D001231 1.4e-07 60.5 179 32.4
PSO675G2269 Papaver somniferum HOM05D001360 ORTHO05D001231 1.4e-07 60.5 176 33.5
PSO732G0270 Papaver somniferum HOM05D001360 ORTHO05D001231 1.4e-07 60.5 176 33.5
Rhsim13G0054600 Rhododendron simsii HOM05D001360 ORTHO05D001231 1.4e-07 60.5 199 32.2
Carub.0003s0705 Capsella rubella HOM05D001360 ORTHO05D001231 1.8e-07 60.1 188 33.0
Aqoxy6G00986 Aquilegia oxysepala HOM05D001360 ORTHO05D001231 2.4e-07 59.7 176 33.0
Lj1g0010077 Lotus japonicus HOM05D001360 ORTHO05D001231 3.1e-07 59.3 182 32.4
Sp3g06420 Schrenkiella parvula HOM05D001360 ORTHO05D001231 3.1e-07 59.3 174 32.8
TAR362G0852 Trochodendron aralioides HOM05D001360 ORTHO05D001231 3.1e-07 59.3 165 33.3
BcaB03g14697 Brassica carinata HOM05D001360 ORTHO05D001231 4.1e-07 58.9 174 32.8
BcaC05g29543 Brassica carinata HOM05D001360 ORTHO05D001231 4.1e-07 58.9 180 32.8
C05p59810 Brassica napus HOM05D001360 ORTHO05D001231 4.1e-07 58.9 182 33.5
BolC5t34635H Brassica oleracea HOM05D001360 ORTHO05D001231 4.1e-07 58.9 182 33.5
Dinv35454 Davidia involucrata HOM05D001360 ORTHO05D001231 4.1e-07 58.9 169 33.7
HPP92_022054 Vanilla planifolia HOM05D001360 ORTHO05D001231 4.1e-07 58.9 165 36.4
Duzib138G1389 Durio zibethinus HOM05D001360 ORTHO05D001231 5.4e-07 58.5 179 33.5
A03p35290 Brassica napus HOM05D001360 ORTHO05D001231 7.0e-07 58.2 180 33.3
BraA03t12707Z Brassica rapa HOM05D001360 ORTHO05D001231 7.0e-07 58.2 180 33.3
Migut.D00746 Erythranthe guttata HOM05D001360 ORTHO05D001231 7.0e-07 58.2 175 28.6
MSTRG.21299 Avicennia marina HOM05D001360 ORTHO05D001231 1.2e-06 57.4 185 30.3
Migut.N00679 Erythranthe guttata HOM05D001360 ORTHO05D001231 1.2e-06 57.4 195 29.2
GSVIVG01005237001 Vitis vinifera HOM05D001360 ORTHO05D001231 1.2e-06 57.4 176 33.0
Aa31LG5G23600 Aethionema arabicum HOM05D001360 ORTHO05D001231 1.6e-06 57.0 165 35.2
BcaC01g04279 Brassica carinata HOM05D001360 ORTHO05D001231 1.6e-06 57.0 180 32.2
BolC3t16559H Brassica oleracea HOM05D001360 ORTHO05D001231 1.6e-06 57.0 180 32.2
C03p42910 Brassica napus HOM05D001360 ORTHO05D001231 2.7e-06 56.2 182 31.9
CDE11G0645 Ceratophyllum demersum HOM05D001360 ORTHO05D001231 2.7e-06 56.2 169 33.1
Migut.D00747 Erythranthe guttata HOM05D001360 ORTHO05D001231 5.9e-06 55.1 182 26.9
SalBow6G2988 Salvia bowleyana HOM05D001360 ORTHO05D001231 7.7e-06 54.7 162 28.4
SalBow6G3990 Salvia bowleyana HOM05D001360 ORTHO05D001231 7.7e-06 54.7 162 28.4


User provided reference genes

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