Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A1086T64 Lonicera japonica HOM05D003314 ORTHO05D004164 1.5e-127 459.5 231 100.0
HanXRQChr01g0011671 Helianthus annuus HOM05D003314 ORTHO05D004164 1.6e-113 412.9 226 90.7
Lsat_1_v5_gn_5_172641 Lactuca sativa HOM05D003314 ORTHO05D004164 4.7e-113 411.4 226 90.7
Ciclev10027872m.g Citrus clementina HOM05D003314 ORTHO05D004164 6.1e-113 411.0 226 91.2
Manes.18G141800 Manihot esculenta HOM05D003314 ORTHO05D004164 6.1e-113 411.0 226 91.6
Hma1.2p1_1981F.1_g309920 Hydrangea macrophylla HOM05D003314 ORTHO05D004164 1.4e-112 409.8 226 91.2
Lsat_1_v5_gn_9_19140 Lactuca sativa HOM05D003314 ORTHO05D004164 3.0e-112 408.7 226 91.2
Potri.009G073800 Populus trichocarpa HOM05D003314 ORTHO05D004164 3.0e-112 408.7 226 90.7
Cc01_g14510 Coffea canephora HOM05D003314 ORTHO05D004164 5.1e-112 407.9 224 91.5
GSVIVG01024699001 Vitis vinifera HOM05D003314 ORTHO05D004164 6.7e-112 407.5 226 91.6
Aqoxy4G02458 Aquilegia oxysepala HOM05D003314 ORTHO05D004164 1.1e-111 406.8 226 91.2
PGR119G0996 Punica granatum HOM05D003314 ORTHO05D004164 1.1e-111 406.8 226 91.2
QL01p039122 Quercus lobata HOM05D003314 ORTHO05D004164 1.1e-111 406.8 225 90.2
Gohir.A03G028500 Gossypium hirsutum HOM05D003314 ORTHO05D004164 1.5e-111 406.4 226 90.7
Gorai.003G146900 Gossypium raimondii HOM05D003314 ORTHO05D004164 1.5e-111 406.4 226 90.7
PSO017G4706 Papaver somniferum HOM05D003314 ORTHO05D004164 1.5e-111 406.4 226 90.3
PSO170G0130 Papaver somniferum HOM05D003314 ORTHO05D004164 1.5e-111 406.4 226 90.3
Potri.001G279100 Populus trichocarpa HOM05D003314 ORTHO05D004164 2.0e-111 406.0 226 90.3
HanXRQChr08g0229151 Helianthus annuus HOM05D003314 ORTHO05D004164 2.6e-111 405.6 226 90.7
Lalb_Chr15g0083041 Lupinus albus HOM05D003314 ORTHO05D004164 2.6e-111 405.6 226 90.3
TAR636G3324 Trochodendron aralioides HOM05D003314 ORTHO05D004164 2.6e-111 405.6 226 90.7
Atru.chr3.4168 Acer truncatum HOM05D003314 ORTHO05D004164 3.3e-111 405.2 226 89.8
COL.COLO4_11092 Corchorus olitorius HOM05D003314 ORTHO05D004164 3.3e-111 405.2 226 90.7
ECA248G0301 Erigeron canadensis HOM05D003314 ORTHO05D004164 3.3e-111 405.2 226 90.3
Gohir.D03G140100 Gossypium hirsutum HOM05D003314 ORTHO05D004164 3.3e-111 405.2 226 90.3
Psat5g157680 Pisum sativum HOM05D003314 ORTHO05D004164 4.4e-111 404.8 226 89.8
SalBow2G2371 Salvia bowleyana HOM05D003314 ORTHO05D004164 4.4e-111 404.8 224 90.2
Thecc.09G352300 Theobroma cacao HOM05D003314 ORTHO05D004164 4.4e-111 404.8 226 90.7
Lj6g0001244 Lotus japonicus HOM05D003314 ORTHO05D004164 5.7e-111 404.4 226 90.3
CANSAT54G2389 Cannabis sativa HOM05D003314 ORTHO05D004164 7.4e-111 404.1 226 89.8
CSS0022626 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 1.3e-110 403.3 226 89.4
CSS0049027 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 1.3e-110 403.3 226 89.4
Duzib150G1198 Durio zibethinus HOM05D003314 ORTHO05D004164 1.3e-110 403.3 226 90.7
Migut.N00780 Erythranthe guttata HOM05D003314 ORTHO05D004164 1.3e-110 403.3 224 88.8
Eucgr.J01899 Eucalyptus grandis HOM05D003314 ORTHO05D004164 1.3e-110 403.3 226 89.8
THA.LOC104800751 Tarenaya hassleriana HOM05D003314 ORTHO05D004164 1.7e-110 402.9 226 88.9
Nn2g10926 Nelumbo nucifera HOM05D003314 ORTHO05D004164 2.2e-110 402.5 227 90.7
Haze_24369 Corylus avellana HOM05D003314 ORTHO05D004164 2.8e-110 402.1 226 89.8
CiPaw.13G074400 Carya illinoinensis HOM05D003314 ORTHO05D004164 6.3e-110 401.0 226 88.9
Ca_14964_v3 Cicer arietinum L. HOM05D003314 ORTHO05D004164 6.3e-110 401.0 226 88.9
CSS0023090 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 8.2e-110 400.6 226 89.8
ECA247G1043 Erigeron canadensis HOM05D003314 ORTHO05D004164 8.2e-110 400.6 226 88.9
RcHm_v2.0_Chr5g0070401 Rosa chinensis HOM05D003314 ORTHO05D004164 8.2e-110 400.6 226 89.8
FvH4_3g39080 Fragaria vesca HOM05D003314 ORTHO05D004164 1.1e-109 400.2 226 89.4
Medtr3g464770 Medicago truncatula HOM05D003314 ORTHO05D004164 1.4e-109 399.8 226 88.5
TPR.G32920 Trifolium pratense HOM05D003314 ORTHO05D004164 1.4e-109 399.8 226 88.9
Thhalv10006901m.g Eutrema salsugineum HOM05D003314 ORTHO05D004164 1.8e-109 399.4 226 88.1
Oeu051518.1 Olea europaea HOM05D003314 ORTHO05D004164 1.8e-109 399.4 226 88.1
Sopen06g033530 Solanum pennellii HOM05D003314 ORTHO05D004164 1.8e-109 399.4 224 89.3
PGSC0003DMG400030370 Solanum tuberosum HOM05D003314 ORTHO05D004164 1.8e-109 399.4 224 89.3
Nitab4.5_0000839g0080 Nicotiana tabacum HOM05D003314 ORTHO05D004164 2.4e-109 399.1 224 88.8
Cfa011730 Carpinus fangiana HOM05D003314 ORTHO05D004164 3.1e-109 398.7 226 88.9
TAR623G0703 Trochodendron aralioides HOM05D003314 ORTHO05D004164 3.1e-109 398.7 226 88.9
FAN25G2774 Fragaria x ananassa HOM05D003314 ORTHO05D004164 4.1e-109 398.3 226 88.9
Solyc06g082150.4 Solanum lycopersicum HOM05D003314 ORTHO05D004164 4.1e-109 398.3 224 88.8
AT1G07110 Arabidopsis thaliana HOM05D003314 ORTHO05D004164 5.3e-109 397.9 226 88.1
CsaV3_6G016080 Cucumis sativus L. HOM05D003314 ORTHO05D004164 5.3e-109 397.9 226 88.9
Glyma.18G060600 Glycine max HOM05D003314 ORTHO05D004164 5.3e-109 397.9 226 88.9
BcaB03g13407 Brassica carinata HOM05D003314 ORTHO05D004164 6.9e-109 397.5 226 87.2
A08p35790 Brassica napus HOM05D003314 ORTHO05D004164 6.9e-109 397.5 226 87.2
C08p02820 Brassica napus HOM05D003314 ORTHO05D004164 6.9e-109 397.5 226 87.2
BolC8t47077H Brassica oleracea HOM05D003314 ORTHO05D004164 6.9e-109 397.5 226 87.2
BraA08t35486Z Brassica rapa HOM05D003314 ORTHO05D004164 6.9e-109 397.5 226 87.2
Nitab4.5_0000752g0070 Nicotiana tabacum HOM05D003314 ORTHO05D004164 6.9e-109 397.5 223 89.2
Nitab4.5_0002352g0010 Nicotiana tabacum HOM05D003314 ORTHO05D004164 9.1e-109 397.1 223 88.8
AL1G17230 Arabidopsis lyrata HOM05D003314 ORTHO05D004164 1.5e-108 396.4 226 87.6
BcaC07g42027 Brassica carinata HOM05D003314 ORTHO05D004164 1.5e-108 396.4 226 87.6
C08p50810 Brassica napus HOM05D003314 ORTHO05D004164 1.5e-108 396.4 226 87.6
BolC8t52609H Brassica oleracea HOM05D003314 ORTHO05D004164 1.5e-108 396.4 226 87.6
Carub.0001s0639 Capsella rubella HOM05D003314 ORTHO05D004164 1.5e-108 396.4 226 87.6
Peaxi162Scf00540g00022 Petunia axillaris HOM05D003314 ORTHO05D004164 1.5e-108 396.4 224 88.4
Prupe.6G053800 Prunus persica HOM05D003314 ORTHO05D004164 1.5e-108 396.4 226 88.5
Aa31LG1G6350 Aethionema arabicum HOM05D003314 ORTHO05D004164 2.0e-108 396.0 226 87.2
MSTRG.12679 Avicennia marina HOM05D003314 ORTHO05D004164 2.0e-108 396.0 224 87.9
A09p66600 Brassica napus HOM05D003314 ORTHO05D004164 2.0e-108 396.0 226 87.6
BraA09t42000Z Brassica rapa HOM05D003314 ORTHO05D004164 2.0e-108 396.0 226 87.6
arahy.Tifrunner.gnm1.ann1.H173G9 Arachis hypogaea HOM05D003314 ORTHO05D004164 3.4e-108 395.2 227 89.0
MSTRG.17878 Avicennia marina HOM05D003314 ORTHO05D004164 3.4e-108 395.2 224 88.8
CDE06G0062 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 3.4e-108 395.2 226 87.6
Glyma.11G169700 Glycine max HOM05D003314 ORTHO05D004164 3.4e-108 395.2 226 88.5
TWI31G0289 Tripterygium wilfordii HOM05D003314 ORTHO05D004164 3.4e-108 395.2 226 89.4
VMungo0540G1658 Vigna mungo HOM05D003314 ORTHO05D004164 3.4e-108 395.2 226 88.1
SGA_v2.0_scaffold146G36142 Striga asiatica HOM05D003314 ORTHO05D004164 4.5e-108 394.8 247 82.6
Phvul.006G069900 Phaseolus vulgaris HOM05D003314 ORTHO05D004164 1.0e-107 393.7 226 88.1
THA.LOC104815810 Tarenaya hassleriana HOM05D003314 ORTHO05D004164 1.0e-107 393.7 226 87.6
CiPaw.14G057100 Carya illinoinensis HOM05D003314 ORTHO05D004164 1.3e-107 393.3 226 88.1
CARHR006800 Cardamine hirsuta HOM05D003314 ORTHO05D004164 1.7e-107 392.9 226 87.2
CAN.G1095.9 Capsicum annuum HOM05D003314 ORTHO05D004164 2.2e-107 392.5 224 87.1
vmacro02947 Vaccinium macrocarpon HOM05D003314 ORTHO05D004164 2.2e-107 392.5 252 81.3
arahy.Tifrunner.gnm1.ann1.99UL3I Arachis hypogaea HOM05D003314 ORTHO05D004164 3.8e-107 391.7 229 88.2
C05p05170 Brassica napus HOM05D003314 ORTHO05D004164 3.8e-107 391.7 226 86.3
BolC5t29289H Brassica oleracea HOM05D003314 ORTHO05D004164 3.8e-107 391.7 226 86.3
Sed0000995 Sechium edule HOM05D003314 ORTHO05D004164 5.0e-107 391.3 226 87.2
SGA_v2.0_scaffold120G32908 Striga asiatica HOM05D003314 ORTHO05D004164 6.5e-107 391.0 250 81.2
A10p05630 Brassica napus HOM05D003314 ORTHO05D004164 8.5e-107 390.6 226 86.3
EL10Ac9g22391 Beta vulgaris HOM05D003314 ORTHO05D004164 1.1e-106 390.2 226 86.7
Dinv09644 Davidia involucrata HOM05D003314 ORTHO05D004164 1.4e-106 389.8 215 90.7
Psat2g055960 Pisum sativum HOM05D003314 ORTHO05D004164 1.4e-106 389.8 226 86.3
LjContig00141g0002673 Lotus japonicus HOM05D003314 ORTHO05D004164 3.2e-106 388.7 226 86.3
Os05g0164100 Oryza sativa ssp. japonica HOM05D003314 ORTHO05D004164 3.2e-106 388.7 226 86.3
Medtr5g071900 Medicago truncatula HOM05D003314 ORTHO05D004164 4.2e-106 388.3 226 85.8
unitig_60.g25552 Utricularia gibba HOM05D003314 ORTHO05D004164 4.2e-106 388.3 224 86.2
Zm00001eb282250 Zea mays HOM05D003314 ORTHO05D004164 4.2e-106 388.3 226 86.3
HPP92_013781 Vanilla planifolia HOM05D003314 ORTHO05D004164 5.5e-106 387.9 226 86.7
MD03G1064800 Malus domestica HOM05D003314 ORTHO05D004164 7.2e-106 387.5 226 87.2
Ca_05629_v3 Cicer arietinum L. HOM05D003314 ORTHO05D004164 9.4e-106 387.1 226 85.4
TWI79G1066 Tripterygium wilfordii HOM05D003314 ORTHO05D004164 1.6e-105 386.3 226 88.1
ATR0681G099 Amborella trichopoda HOM05D003314 ORTHO05D004164 3.6e-105 385.2 219 88.6
MBI15_g29380_MAGBIO Magnolia biondii HOM05D003314 ORTHO05D004164 4.7e-105 384.8 269 77.0
Phvul.008G259400 Phaseolus vulgaris HOM05D003314 ORTHO05D004164 6.1e-105 384.4 226 86.7
Zm00001eb013550 Zea mays HOM05D003314 ORTHO05D004164 1.8e-104 382.9 225 84.4
Glyma.02G228700 Glycine max HOM05D003314 ORTHO05D004164 3.9e-104 381.7 226 86.3
MELO3C026830.2 Cucumis melo HOM05D003314 ORTHO05D004164 5.2e-104 381.3 215 89.3
Lalb_Chr17g0345221 Lupinus albus HOM05D003314 ORTHO05D004164 5.2e-104 381.3 226 85.4
Glyma.14G195700 Glycine max HOM05D003314 ORTHO05D004164 2.0e-103 379.4 226 85.8
Mapoly0056s0097 Marchantia polymorpha HOM05D003314 ORTHO05D004164 4.4e-103 378.3 226 83.2
arahy.Tifrunner.gnm1.ann1.UVU1B7 Arachis hypogaea HOM05D003314 ORTHO05D004164 5.7e-103 377.9 226 84.1
AUR62041217 Chenopodium quinoa HOM05D003314 ORTHO05D004164 5.7e-103 377.9 246 80.5
arahy.Tifrunner.gnm1.ann1.Y0JIV8 Arachis hypogaea HOM05D003314 ORTHO05D004164 7.4e-103 377.5 226 83.6
Os03g0294200 Oryza sativa ssp. japonica HOM05D003314 ORTHO05D004164 8.2e-102 374.0 225 82.7
AagrBONN_evm.TU.Sc2ySwM_117.3149 Anthoceros agrestis HOM05D003314 ORTHO05D004164 1.8e-101 372.9 225 81.3
Pp3c25_1530 Physcomitrium patens HOM05D003314 ORTHO05D004164 2.6e-100 369.0 225 79.6
Sabra09G0055800 Salix brachista HOM05D003314 ORTHO05D004164 1.0e-99 367.1 208 88.9
Pp3c16_2340 Physcomitrium patens HOM05D003314 ORTHO05D004164 1.3e-99 366.7 225 79.6
Pp3c21_10950 Physcomitrium patens HOM05D003314 ORTHO05D004164 3.8e-99 365.2 225 79.6
DCAR_007359 Daucus carota HOM05D003314 ORTHO05D004164 1.9e-98 362.8 226 83.2
Lj1A130T38 Lonicera japonica HOM05D003314 ORTHO05D004164 3.2e-98 362.1 250 78.0
Duzib168G0330 Durio zibethinus HOM05D003314 ORTHO05D004164 8.0e-97 357.5 194 90.7
SMO174G0065 Selaginella moellendorffii HOM05D003314 ORTHO05D004164 8.0e-97 357.5 224 77.7
Pp3c19_20300 Physcomitrium patens HOM05D003314 ORTHO05D004164 2.3e-96 355.9 226 76.5
FAN21G3397 Fragaria x ananassa HOM05D003314 ORTHO05D004164 1.5e-95 353.2 340 59.4
TPR.G5069 Trifolium pratense HOM05D003314 ORTHO05D004164 2.6e-95 352.4 206 85.4
SMO244G0010 Selaginella moellendorffii HOM05D003314 ORTHO05D004164 4.4e-95 351.7 225 77.8
Actinidia32630 Actinidia chinensis HOM05D003314 ORTHO05D004164 4.8e-94 348.2 238 76.9
ClCG02G019450 Citrullus lanatus HOM05D003314 ORTHO05D004164 1.6e-92 343.2 226 79.6
Rhsim13G0067500 Rhododendron simsii HOM05D003314 ORTHO05D004164 3.5e-92 342.0 243 73.7
Sp1g05820 Schrenkiella parvula HOM05D003314 ORTHO05D004164 1.5e-87 326.6 226 77.0
Dinv28665 Davidia involucrata HOM05D003314 ORTHO05D004164 2.8e-86 322.4 172 93.6
AUR62025049 Chenopodium quinoa HOM05D003314 ORTHO05D004164 3.5e-84 315.5 208 80.3
BraA10t42824Z Brassica rapa HOM05D003314 ORTHO05D004164 6.5e-83 311.2 274 63.1
TAR636G0028 Trochodendron aralioides HOM05D003314 ORTHO05D002223 3.3e-82 308.9 175 90.3
MD11G1068700 Malus domestica HOM05D003314 ORTHO05D004164 4.7e-81 305.1 176 87.5
CDE12G0377 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 9.8e-79 297.4 178 84.3
Ah.01g002410 Amaranthus hybridus HOM05D003314 ORTHO05D004164 2.0e-71 273.1 226 65.9
BcaC05g24676 Brassica carinata HOM05D003314 ORTHO05D004164 1.9e-69 266.5 226 65.5
Sc21g0000200 Simmondsia chinensis HOM05D003314 ORTHO05D004164 9.2e-61 237.7 140 82.9
PRCOL_00004422 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 1.5e-55 220.3 332 38.9
Cfa025454 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.7e-54 216.9 222 45.5
Cre16.g691888 Chlamydomonas reinhardtii HOM05D003314 ORTHO05D004164 4.9e-54 215.3 256 46.9
PRCOL_00005130 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 4.6e-52 208.8 230 46.1
Cre16.g652150 Chlamydomonas reinhardtii HOM05D003314 ORTHO05D004164 6.6e-51 204.9 267 44.6
Glyma.11G172200 Glycine max HOM05D003314 ORTHO05D004164 1.1e-50 204.1 116 85.3
Haze_27150 Corylus avellana HOM05D003314 ORTHO05D004164 1.2e-49 200.7 219 49.3
MCO01G554 Micromonas commoda HOM05D003314 ORTHO05D004164 6.8e-48 194.9 223 48.9
Cpa.g.sc2.427 Carica papaya HOM05D003314 ORTHO05D004164 1.2e-47 194.1 105 87.6
Cpa.g.sc2.426 Carica papaya HOM05D003314 ORTHO05D004164 1.7e-43 180.3 104 90.4
SEGI_28657 Sequoiadendron giganteum HOM05D003314 ORTHO05D004164 2.4e-37 159.8 98 82.7
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 5.1e-35 152.1 268 36.2
SEGI_19911 Sequoiadendron giganteum HOM05D003314 ORTHO05D004164 1.9e-34 150.2 101 78.2
MCO04G290 Micromonas commoda HOM05D003314 ORTHO05D004164 2.4e-32 143.3 212 39.6
Hund08127 Selenicereus undatus HOM05D003314 ORTHO05D004164 2.6e-31 139.8 80 85.0
SEGI_24147 Sequoiadendron giganteum HOM05D003314 ORTHO05D026139 2.6e-31 139.8 74 91.9
Glyma.06G028800 Glycine max HOM05D003314 ORTHO05D035932 5.4e-29 132.1 77 83.1
Glyma.17G189950 Glycine max HOM05D003314 ORTHO05D035932 5.4e-29 132.1 77 83.1
Cfa024020 Carpinus fangiana HOM05D003314 ORTHO05D004164 2.7e-28 129.8 229 35.4
PSO302G0047 Papaver somniferum HOM05D003314 ORTHO05D004164 3.5e-28 129.4 105 69.5
Gohir.A07G160200 Gossypium hirsutum HOM05D003314 ORTHO05D004164 1.8e-27 127.1 69 88.4
SEGI_07736 Sequoiadendron giganteum HOM05D003314 ORTHO05D035932 1.4e-24 117.5 69 81.2
Dinv07104 Davidia involucrata HOM05D003314 ORTHO05D004164 4.6e-20 102.4 51 92.2
Dinv25276 Davidia involucrata HOM05D000557 ORTHO05D019084 1.0e-19 101.3 51 92.2
MD11G1068800 Malus domestica HOM05D003314 ORTHO05D004164 4.3e-18 95.9 50 90.0
CDE12G0129 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 2.8e-17 93.2 45 95.6
HanXRQChr13g0399511 Helianthus annuus HOM05D006254 ORTHO05D007409 1.8e-08 63.9 157 36.9
MD03G1179800 Malus domestica HOM05D003314 ORTHO05D019084 2.0e-07 60.5 42 69.0
HanXRQChr10g0315241 Helianthus annuus HOM05D003314 ORTHO05D004164 1.3e-06 57.8 44 70.5
Sp5g11680 Schrenkiella parvula HOM05D003180 ORTHO05D003664 3.8e-06 56.2 161 28.6
HanXRQChr05g0144901 Helianthus annuus HOM05D003314 ORTHO05D222853 6.5e-06 55.5 68 45.6
THA.LOC104826890 Tarenaya hassleriana HOM05D003180 ORTHO05D003664 8.5e-06 55.1 168 29.2


User provided reference genes

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