Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A1036G49 Lonicera japonica HOM05D000444 ORTHO05D235508 3.2e-37 157.9 79 100.0
vmacro03172 Vaccinium macrocarpon HOM05D000444 ORTHO05D003472 3.9e-11 71.2 50 62.0
HanXRQChr02g0051311 Helianthus annuus HOM05D000444 ORTHO05D003472 7.4e-10 67.0 42 66.7
Lj1C184T9 Lonicera japonica HOM05D000444 ORTHO05D003472 7.4e-10 67.0 42 61.9
ECA233G5527 Erigeron canadensis HOM05D000444 ORTHO05D003472 9.6e-10 66.6 42 66.7
DCAR_006041 Daucus carota HOM05D000444 ORTHO05D003472 1.3e-09 66.2 42 59.5
Dinv32791 Davidia involucrata HOM05D000444 ORTHO05D003472 1.3e-09 66.2 42 64.3
CSS0007878 Camellia sinensis var. sinensis HOM05D000444 ORTHO05D003472 2.1e-09 65.5 42 66.7
Nn2g10679 Nelumbo nucifera HOM05D000444 ORTHO05D003472 4.8e-09 64.3 42 59.5
DCAR_018835 Daucus carota HOM05D000444 ORTHO05D003472 1.1e-08 63.2 42 57.1
TAR623G1750 Trochodendron aralioides HOM05D000444 ORTHO05D003472 1.1e-08 63.2 42 61.9
DCAR_018832 Daucus carota HOM05D000444 ORTHO05D003472 1.4e-08 62.8 40 60.0
MBI05_g24964_MAGBIO Magnolia biondii HOM05D000444 ORTHO05D003472 1.4e-08 62.8 42 61.9
Actinidia24079 Actinidia chinensis HOM05D000444 ORTHO05D003472 1.8e-08 62.4 42 61.9
Nn2g13008 Nelumbo nucifera HOM05D000444 ORTHO05D003472 1.8e-08 62.4 64 43.8
CSS0016655 Camellia sinensis var. sinensis HOM05D000444 ORTHO05D003472 2.4e-08 62.0 42 61.9
Dinv37258 Davidia involucrata HOM05D000444 ORTHO05D003472 2.4e-08 62.0 42 61.9
Lsat_1_v5_gn_6_26261 Lactuca sativa HOM05D000444 ORTHO05D003472 2.4e-08 62.0 42 59.5
ClCG02G020930 Citrullus lanatus HOM05D000444 ORTHO05D003472 3.1e-08 61.6 42 59.5
Lj3A979G61 Lonicera japonica HOM05D000444 ORTHO05D003472 3.1e-08 61.6 43 58.1
MSTRG.19141 Avicennia marina HOM05D000444 ORTHO05D003472 4.0e-08 61.2 42 61.9
Oeu037231.3 Olea europaea HOM05D000444 ORTHO05D003472 5.3e-08 60.8 42 61.9
Actinidia19710 Actinidia chinensis HOM05D000444 ORTHO05D003472 6.9e-08 60.5 42 59.5
Actinidia25210 Actinidia chinensis HOM05D000444 ORTHO05D003472 6.9e-08 60.5 42 59.5
MSTRG.5724 Avicennia marina HOM05D000444 ORTHO05D003472 6.9e-08 60.5 42 59.5
Migut.N02620 Erythranthe guttata HOM05D000444 ORTHO05D003472 6.9e-08 60.5 42 57.1
Sp6g39670 Schrenkiella parvula HOM05D000444 ORTHO05D003472 6.9e-08 60.5 42 59.5
Actinidia07115 Actinidia chinensis HOM05D000444 ORTHO05D003472 9.0e-08 60.1 42 59.5
Cc06_g03580 Coffea canephora HOM05D000444 ORTHO05D003472 9.0e-08 60.1 42 57.1
MELO3C009319.2 Cucumis melo HOM05D000444 ORTHO05D003472 9.0e-08 60.1 42 57.1
PSO339G2480 Papaver somniferum HOM05D000444 ORTHO05D003472 9.0e-08 60.1 42 54.8
PSO384G4307 Papaver somniferum HOM05D000444 ORTHO05D003472 1.2e-07 59.7 42 54.8
GSVIVG01025132001 Vitis vinifera HOM05D000444 ORTHO05D003472 1.2e-07 59.7 42 59.5
Aqoxy2G01666 Aquilegia oxysepala HOM05D000444 ORTHO05D003472 1.5e-07 59.3 42 57.1
CSS0014232 Camellia sinensis var. sinensis HOM05D000444 ORTHO05D003472 1.5e-07 59.3 42 59.5
FvH4_6g15410 Fragaria vesca HOM05D000444 ORTHO05D003472 1.5e-07 59.3 42 57.1
FAN05G4326 Fragaria x ananassa HOM05D000444 ORTHO05D003472 1.5e-07 59.3 42 57.1
FAN09G1926 Fragaria x ananassa HOM05D000444 ORTHO05D003472 1.5e-07 59.3 42 57.1
FAN14G3296 Fragaria x ananassa HOM05D000444 ORTHO05D003472 1.5e-07 59.3 42 57.1
Hma1.2p1_0350F.1_g132770 Hydrangea macrophylla HOM05D000444 ORTHO05D003472 1.5e-07 59.3 40 62.5
Potri.016G086200 Populus trichocarpa HOM05D000444 ORTHO05D003472 1.5e-07 59.3 42 57.1
Rhsim13G0092400 Rhododendron simsii HOM05D000444 ORTHO05D003472 1.5e-07 59.3 42 57.1
AL6G12260 Arabidopsis lyrata HOM05D000444 ORTHO05D003472 2.0e-07 58.9 42 57.1
BcaC06g32023 Brassica carinata HOM05D000444 ORTHO05D003472 2.0e-07 58.9 42 57.1
BcaNung04731 Brassica carinata HOM05D000444 ORTHO05D003472 2.0e-07 58.9 42 57.1
BcaNung05511 Brassica carinata HOM05D000444 ORTHO05D003472 2.0e-07 58.9 42 57.1
A10p32830 Brassica napus HOM05D000444 ORTHO05D003472 2.0e-07 58.9 42 57.1
C09p73730 Brassica napus HOM05D000444 ORTHO05D003472 2.0e-07 58.9 42 57.1
BolC9t60106H Brassica oleracea HOM05D000444 ORTHO05D003472 2.0e-07 58.9 42 57.1
BraA10t45320Z Brassica rapa HOM05D000444 ORTHO05D003472 2.0e-07 58.9 42 57.1
Peaxi162Scf00389g00942 Petunia axillaris HOM05D000444 ORTHO05D003472 2.0e-07 58.9 42 52.4
Sc20g0005090 Simmondsia chinensis HOM05D000444 ORTHO05D003472 2.0e-07 58.9 42 57.1
Cfa017511 Carpinus fangiana HOM05D000444 ORTHO05D003472 2.6e-07 58.5 42 57.1
Haze_20643 Corylus avellana HOM05D000444 ORTHO05D003472 2.6e-07 58.5 42 57.1
RcHm_v2.0_Chr3g0468891 Rosa chinensis HOM05D000444 ORTHO05D003472 2.6e-07 58.5 42 57.1
Sabra16G0092500 Salix brachista HOM05D000444 ORTHO05D003472 2.6e-07 58.5 42 54.8
THA.LOC104816321 Tarenaya hassleriana HOM05D000444 ORTHO05D003472 2.6e-07 58.5 42 54.8
Cc01_g11560 Coffea canephora HOM05D000444 ORTHO05D003472 3.4e-07 58.2 42 57.1
ECA233G2719 Erigeron canadensis HOM05D000444 ORTHO05D003472 3.4e-07 58.2 43 55.8
Lj2C107T9 Lonicera japonica HOM05D000444 ORTHO05D003472 3.4e-07 58.2 43 53.5
Sed0019511 Sechium edule HOM05D000444 ORTHO05D003472 3.4e-07 58.2 42 57.1
Atru.chr8.2560_Atru.chr8.2561 Acer truncatum HOM05D000444 ORTHO05D003472 4.5e-07 57.8 42 57.1
CsaV3_3G035600 Cucumis sativus L. HOM05D000444 ORTHO05D003472 4.5e-07 57.8 42 54.8
FAN02G4085 Fragaria x ananassa HOM05D000444 ORTHO05D003472 4.5e-07 57.8 42 54.8
Lsat_1_v5_gn_6_29740 Lactuca sativa HOM05D000444 ORTHO05D003472 4.5e-07 57.8 43 55.8
Manes.08G003700 Manihot esculenta HOM05D000444 ORTHO05D003472 4.5e-07 57.8 42 52.4
Nitab4.5_0001802g0110 Nicotiana tabacum HOM05D000444 ORTHO05D003472 4.5e-07 57.8 42 52.4
Nitab4.5_0002129g0090 Nicotiana tabacum HOM05D000444 ORTHO05D003472 4.5e-07 57.8 42 52.4
Potri.006G131300 Populus trichocarpa HOM05D000444 ORTHO05D003472 4.5e-07 57.8 42 54.8
Sed0011047 Sechium edule HOM05D000444 ORTHO05D003472 4.5e-07 57.8 42 54.8
TAR636G1471 Trochodendron aralioides HOM05D000444 ORTHO05D003472 4.5e-07 57.8 42 54.8
Carub.0006s0177 Capsella rubella HOM05D000444 ORTHO05D003472 5.8e-07 57.4 42 54.8
Glyma.10G049800 Glycine max HOM05D000444 ORTHO05D003472 5.8e-07 57.4 42 54.8
Phvul.011G072400 Phaseolus vulgaris HOM05D000444 ORTHO05D003472 5.8e-07 57.4 42 54.8
PGSC0003DMG400027375 Solanum tuberosum HOM05D000444 ORTHO05D003472 5.8e-07 57.4 42 54.8
VMungo1127G0171 Vigna mungo HOM05D000444 ORTHO05D003472 5.8e-07 57.4 42 54.8
AT5G02970 Arabidopsis thaliana HOM05D000444 ORTHO05D003472 7.6e-07 57.0 42 54.8
Carub.0003s0878 Capsella rubella HOM05D000444 ORTHO05D003472 7.6e-07 57.0 42 52.4
Cpa.g.sc45.37 Carica papaya HOM05D000444 ORTHO05D003472 7.6e-07 57.0 43 55.8
Thhalv10013252m.g Eutrema salsugineum HOM05D000444 ORTHO05D003472 7.6e-07 57.0 42 52.4
Glyma.11G152751 Glycine max HOM05D000444 ORTHO05D003472 7.6e-07 57.0 42 54.8
Solyc11g072440.2 Solanum lycopersicum HOM05D000444 ORTHO05D003472 7.6e-07 57.0 42 54.8
Sopen11g030080 Solanum pennellii HOM05D000444 ORTHO05D003472 7.6e-07 57.0 42 54.8
CANSAT54G0195 Cannabis sativa HOM05D000444 ORTHO05D003472 9.9e-07 56.6 42 50.0
Cfa011367 Carpinus fangiana HOM05D000444 ORTHO05D003472 9.9e-07 56.6 42 57.1
CDE09G1299 Ceratophyllum demersum HOM05D000444 ORTHO05D003472 9.9e-07 56.6 42 57.1
Ca_08821_v3 Cicer arietinum L. HOM05D000444 ORTHO05D003472 9.9e-07 56.6 42 57.1
Ca_08828_v3 Cicer arietinum L. HOM05D000444 ORTHO05D003472 9.9e-07 56.6 42 57.1
Ciclev10011495m.g Citrus clementina HOM05D000444 ORTHO05D003472 9.9e-07 56.6 42 54.8
Haze_23918 Corylus avellana HOM05D000444 ORTHO05D003472 9.9e-07 56.6 42 57.1
Eucgr.A01174 Eucalyptus grandis HOM05D000444 ORTHO05D003472 9.9e-07 56.6 42 59.5
MD04G1103800 Malus domestica HOM05D000444 ORTHO05D003472 9.9e-07 56.6 42 50.0
Sc06g0010630 Simmondsia chinensis HOM05D000444 ORTHO05D003472 9.9e-07 56.6 42 50.0
SGA_v2.0_scaffold80G25749 Striga asiatica HOM05D000444 ORTHO05D003472 9.9e-07 56.6 42 52.4
AT3G09690 Arabidopsis thaliana HOM05D000444 ORTHO05D003472 1.3e-06 56.2 40 55.0
BcaC09g48130 Brassica carinata HOM05D000444 ORTHO05D003472 1.3e-06 56.2 42 50.0
A01p42210 Brassica napus HOM05D000444 ORTHO05D003472 1.3e-06 56.2 42 50.0
BraA01t04289Z Brassica rapa HOM05D000444 ORTHO05D003472 1.3e-06 56.2 42 50.0
CsaV3_6G021620 Cucumis sativus L. HOM05D000444 ORTHO05D003472 1.3e-06 56.2 42 54.8
Glyma.13G137300 Glycine max HOM05D000444 ORTHO05D003472 1.3e-06 56.2 42 54.8
arahy.Tifrunner.gnm1.ann1.5TIT61 Arachis hypogaea HOM05D000444 ORTHO05D003472 1.7e-06 55.8 42 50.0
arahy.Tifrunner.gnm1.ann1.N6D8R0 Arachis hypogaea HOM05D000444 ORTHO05D003472 1.7e-06 55.8 42 50.0
arahy.Tifrunner.gnm1.ann1.VY6APJ Arachis hypogaea HOM05D000444 ORTHO05D003472 1.7e-06 55.8 42 50.0
Ca_19240_v3 Cicer arietinum L. HOM05D000444 ORTHO05D003472 1.7e-06 55.8 42 52.4
Glyma.12G071800 Glycine max HOM05D000444 ORTHO05D003472 1.7e-06 55.8 42 52.4
Lj5g0021512 Lotus japonicus HOM05D000444 ORTHO05D003472 1.7e-06 55.8 42 54.8
TWI75G0756 Tripterygium wilfordii HOM05D000444 ORTHO05D003472 1.7e-06 55.8 42 57.1
TWI75G0881 Tripterygium wilfordii HOM05D000444 ORTHO05D003472 1.7e-06 55.8 42 57.1
AL3G20900 Arabidopsis lyrata HOM05D000444 ORTHO05D003472 2.2e-06 55.5 40 55.0
Medtr4g060900 Medicago truncatula HOM05D000444 ORTHO05D003472 2.2e-06 55.5 42 52.4
Nitab4.5_0012065g0010 Nicotiana tabacum HOM05D000444 ORTHO05D003472 2.2e-06 55.5 42 52.4
Oeu029540.1 Olea europaea HOM05D000444 ORTHO05D003472 2.2e-06 55.5 41 53.7
SalBow3G3327 Salvia bowleyana HOM05D000444 ORTHO05D003472 2.2e-06 55.5 42 47.6
TPR.G14915 Trifolium pratense HOM05D000444 ORTHO05D003472 2.2e-06 55.5 42 52.4
CiPaw.09G179700 Carya illinoinensis HOM05D000444 ORTHO05D003472 2.9e-06 55.1 42 52.4
CiPaw.13G106800 Carya illinoinensis HOM05D000444 ORTHO05D003472 2.9e-06 55.1 42 50.0
DCAR_014964 Daucus carota HOM05D000444 ORTHO05D003472 2.9e-06 55.1 42 54.8
MD03G1111700 Malus domestica HOM05D000444 ORTHO05D003472 2.9e-06 55.1 42 52.4
Psat7g223240 Pisum sativum HOM05D000444 ORTHO05D003472 2.9e-06 55.1 42 52.4
PGR004G2795 Punica granatum HOM05D000444 ORTHO05D003472 2.9e-06 55.1 42 52.4
RhsimUnG0117600 Rhododendron simsii HOM05D000444 ORTHO05D003472 2.9e-06 55.1 43 55.8
RcHm_v2.0_Chr5g0060781 Rosa chinensis HOM05D000444 ORTHO05D003472 2.9e-06 55.1 42 50.0
Sp3g08030 Schrenkiella parvula HOM05D000444 ORTHO05D003472 2.9e-06 55.1 42 50.0
CAN.G553.13 Capsicum annuum HOM05D000444 ORTHO05D003472 3.8e-06 54.7 42 52.4
CARHR084110 Cardamine hirsuta HOM05D000444 ORTHO05D003472 3.8e-06 54.7 42 47.6
MELO3C025745.2 Cucumis melo HOM05D000444 ORTHO05D003472 3.8e-06 54.7 42 52.4
Manes.04G025100 Manihot esculenta HOM05D000444 ORTHO05D003472 3.8e-06 54.7 42 54.8
Oeu026846.1 Olea europaea HOM05D000444 ORTHO05D003472 3.8e-06 54.7 42 50.0
Peaxi162Scf00005g04417 Petunia axillaris HOM05D000444 ORTHO05D003472 3.8e-06 54.7 42 50.0
Phvul.007G164100 Phaseolus vulgaris HOM05D000444 ORTHO05D003472 3.8e-06 54.7 42 52.4
vmacro20056 Vaccinium macrocarpon HOM05D000444 ORTHO05D003472 3.8e-06 54.7 42 54.8
VMungo0720G1772 Vigna mungo HOM05D000444 ORTHO05D003472 3.8e-06 54.7 42 52.4
BolC1t05441H Brassica oleracea HOM05D000444 ORTHO05D003472 4.9e-06 54.3 42 47.6
CANSAT56G2766 Cannabis sativa HOM05D000444 ORTHO05D003472 4.9e-06 54.3 42 50.0
Duzib093G1796 Durio zibethinus HOM05D000444 ORTHO05D003472 4.9e-06 54.3 42 54.8
Thhalv10020498m.g Eutrema salsugineum HOM05D000444 ORTHO05D003472 4.9e-06 54.3 42 47.6
Psat3g044440 Pisum sativum HOM05D000444 ORTHO05D003472 4.9e-06 54.3 42 54.8
EL10Ac7g17356 Beta vulgaris HOM05D000444 ORTHO05D003472 6.4e-06 53.9 45 48.9
Nitab4.5_0000669g0210 Nicotiana tabacum HOM05D000444 ORTHO05D003472 6.4e-06 53.9 42 50.0
Prupe.6G094600 Prunus persica HOM05D000444 ORTHO05D003472 6.4e-06 53.9 42 50.0
QL07p045217 Quercus lobata HOM05D000444 ORTHO05D003472 6.4e-06 53.9 42 52.4
SalBow3G1822 Salvia bowleyana HOM05D000444 ORTHO05D003472 6.4e-06 53.9 42 47.6
SalBow3G3582 Salvia bowleyana HOM05D000444 ORTHO05D003472 6.4e-06 53.9 42 45.2
AUR62040044 Chenopodium quinoa HOM05D000444 ORTHO05D003472 8.4e-06 53.5 42 52.4
Lalb_Chr03g0027101 Lupinus albus HOM05D000444 ORTHO05D003472 8.4e-06 53.5 42 47.6
QL01p037109 Quercus lobata HOM05D000444 ORTHO05D003472 8.4e-06 53.5 42 50.0
TPR.G36962 Trifolium pratense HOM05D000444 ORTHO05D003472 8.4e-06 53.5 42 52.4
HPP92_013892 Vanilla planifolia HOM05D000444 ORTHO05D003472 8.4e-06 53.5 42 50.0


User provided reference genes

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