Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A1007T38 Lonicera japonica HOM05D006963 ORTHO05D008783 0.0e+00 1924.4 995 100.0
CSS0000606 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 0.0e+00 1228.4 1041 66.9
QL01p015018 Quercus lobata HOM05D006963 ORTHO05D008783 0.0e+00 1204.5 1024 65.3
CiPaw.13G122900 Carya illinoinensis HOM05D006963 ORTHO05D008783 0.0e+00 1178.3 1019 64.4
Thecc.09G298600 Theobroma cacao HOM05D006963 ORTHO05D008783 0.0e+00 1175.2 1023 62.9
RcHm_v2.0_Chr5g0056861 Rosa chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1172.1 1016 63.0
Atru.chr3.3511 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1171.4 1013 64.3
Atru.chr3.3517 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1169.1 1013 64.2
Prupe.6G112700 Prunus persica HOM05D006963 ORTHO05D008783 0.0e+00 1165.2 1017 62.8
Cfa010289 Carpinus fangiana HOM05D006963 ORTHO05D008783 0.0e+00 1162.5 1020 63.3
DCAR_018766 Daucus carota HOM05D006963 ORTHO05D008783 0.0e+00 1157.1 1020 62.7
FAN21G1782 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1152.9 1010 63.2
Haze_23703 Corylus avellana HOM05D006963 ORTHO05D008783 0.0e+00 1151.0 1002 63.5
vmacro14391 Vaccinium macrocarpon HOM05D006963 ORTHO05D008783 0.0e+00 1149.8 1019 63.3
FvH4_3g30640 Fragaria vesca HOM05D006963 ORTHO05D008783 0.0e+00 1144.0 1009 62.7
MD03G1129000 Malus domestica HOM05D006963 ORTHO05D008783 0.0e+00 1140.9 1006 62.3
Potri.009G005300 Populus trichocarpa HOM05D006963 ORTHO05D008783 0.0e+00 1135.9 1028 63.4
FAN25G3586 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1133.6 1075 58.9
Rhsim01G0210700 Rhododendron simsii HOM05D006963 ORTHO05D008783 0.0e+00 1130.2 1019 63.5
Manes.04G012900 Manihot esculenta HOM05D006963 ORTHO05D008783 0.0e+00 1125.9 1031 60.7
Gohir.A13G223800 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1122.8 1033 60.1
Ciclev10027698m.g Citrus clementina HOM05D006963 ORTHO05D008783 0.0e+00 1122.1 1019 62.3
FAN16G1993 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1121.3 1002 62.3
FAN11G1352 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1118.6 1061 59.7
Gorai.013G259300 Gossypium raimondii HOM05D006963 ORTHO05D008783 0.0e+00 1114.8 1033 60.0
Cc01_g10290 Coffea canephora HOM05D006963 ORTHO05D008783 0.0e+00 1105.5 1020 60.5
Sabra09G0002400 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1093.6 1023 61.3
Duzib168G1517 Durio zibethinus HOM05D006963 ORTHO05D008783 0.0e+00 1090.9 1026 58.9
Gohir.D13G228600 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1089.7 1033 59.1
Sed0000311 Sechium edule HOM05D006963 ORTHO05D008783 0.0e+00 1086.6 1023 60.0
CANSAT64G0534 Cannabis sativa HOM05D006963 ORTHO05D008783 0.0e+00 1083.6 1025 59.7
CsaV3_6G014380 Cucumis sativus L. HOM05D006963 ORTHO05D008783 0.0e+00 1079.7 1021 59.9
Nitab4.5_0003155g0020 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1079.7 1062 58.3
PGSC0003DMG400007133 Solanum tuberosum HOM05D006963 ORTHO05D008783 0.0e+00 1076.2 1020 60.2
Solyc06g074810.3 Solanum lycopersicum HOM05D006963 ORTHO05D008783 6.8e-312 1073.9 1017 59.6
MELO3C026954.2 Cucumis melo HOM05D006963 ORTHO05D008783 2.7e-311 1072.0 1024 59.3
Glyma.13G322000 Glycine max HOM05D006963 ORTHO05D008783 6.1e-311 1070.8 1023 58.3
Sabra04G0147300 Salix brachista HOM05D006963 ORTHO05D008783 1.8e-310 1069.3 1027 60.3
Sopen06g031250 Solanum pennellii HOM05D006963 ORTHO05D008783 9.7e-309 1063.5 1023 59.1
VMungo1080G0719 Vigna mungo HOM05D006963 ORTHO05D008783 6.3e-308 1060.8 1019 58.3
arahy.Tifrunner.gnm1.ann1.10EEU4 Arachis hypogaea HOM05D006963 ORTHO05D008783 5.3e-307 1057.7 1022 58.5
arahy.Tifrunner.gnm1.ann1.5C5N68 Arachis hypogaea HOM05D006963 ORTHO05D008783 5.3e-307 1057.7 1022 58.6
Phvul.005G130400 Phaseolus vulgaris HOM05D006963 ORTHO05D008783 3.5e-306 1055.0 1024 58.0
Lj3g0023334 Lotus japonicus HOM05D006963 ORTHO05D008783 8.5e-305 1050.4 1031 57.7
Medtr2g084285 Medicago truncatula HOM05D006963 ORTHO05D008783 3.6e-303 1045.0 1028 57.8
ECA248G2820 Erigeron canadensis HOM05D006963 ORTHO05D008783 1.0e-302 1043.5 1000 59.2
Lalb_Chr24g0394941 Lupinus albus HOM05D006963 ORTHO05D008783 4.0e-302 1041.6 1010 58.0
COL.COLO4_19194 Corchorus olitorius HOM05D006963 ORTHO05D008783 5.2e-302 1041.2 948 60.8
Ca_01706_v3 Cicer arietinum L. HOM05D006963 ORTHO05D008783 3.3e-301 1038.5 1023 57.8
ClCG02G021610 Citrullus lanatus HOM05D006963 ORTHO05D008783 1.7e-297 1026.2 1085 56.1
Psat5g253040 Pisum sativum HOM05D006963 ORTHO05D008783 1.9e-296 1022.7 1029 56.5
MSTRG.18703 Avicennia marina HOM05D006963 ORTHO05D008783 4.2e-296 1021.5 1019 57.2
TWI79G0599 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 4.7e-295 1018.1 1019 56.8
Aqoxy1G01103 Aquilegia oxysepala HOM05D006963 ORTHO05D008783 8.0e-295 1017.3 1004 57.3
PSO339G1013 Papaver somniferum HOM05D006963 ORTHO05D008783 2.7e-290 1002.3 1018 57.6
MBI13_g24960_MAGBIO Magnolia biondii HOM05D006963 ORTHO05D008783 1.0e-289 1000.3 1012 56.1
PSO063G0444 Papaver somniferum HOM05D006963 ORTHO05D008783 3.8e-289 998.4 1030 57.2
TAR369G1146 Trochodendron aralioides HOM05D006963 ORTHO05D008783 8.5e-289 997.3 1028 58.0
Eucgr.J00389 Eucalyptus grandis HOM05D006963 ORTHO05D008783 2.3e-286 989.2 1009 55.2
Lsat_1_v5_gn_1_64681 Lactuca sativa HOM05D006963 ORTHO05D008783 3.7e-284 981.9 976 57.8
AUR62029159 Chenopodium quinoa HOM05D006963 ORTHO05D008783 1.6e-282 976.5 1038 55.6
HanXRQChr11g0346501 Helianthus annuus HOM05D006963 ORTHO05D008783 1.6e-282 976.5 1006 56.9
PGR119G1224 Punica granatum HOM05D006963 ORTHO05D008783 1.3e-281 973.4 1012 55.5
TPR.G21046 Trifolium pratense HOM05D006963 ORTHO05D008783 8.6e-281 970.7 1043 53.9
Nitab4.5_0001163g0050 Nicotiana tabacum HOM05D006963 ORTHO05D008783 7.5e-277 957.6 1064 52.4
CARHR121070 Cardamine hirsuta HOM05D006963 ORTHO05D008783 1.8e-275 953.0 1017 53.7
Aa31LG5G7960 Aethionema arabicum HOM05D006963 ORTHO05D008783 9.2e-275 950.7 1018 53.1
Sc06g0010790 Simmondsia chinensis HOM05D006963 ORTHO05D008783 8.9e-270 934.1 1018 54.0
Ah.01g003350 Amaranthus hybridus HOM05D006963 ORTHO05D008783 5.8e-269 931.4 1004 54.2
EL10Ac9g22623 Beta vulgaris HOM05D006963 ORTHO05D008783 1.9e-267 926.4 1033 53.4
CAN.G1432.10 Capsicum annuum HOM05D006963 ORTHO05D008783 7.0e-267 924.5 916 56.8
AL4G21950 Arabidopsis lyrata HOM05D006963 ORTHO05D008783 1.6e-266 923.3 959 54.5
Peaxi162Scf00114g00812 Petunia axillaris HOM05D006963 ORTHO05D008783 2.7e-266 922.5 1020 53.1
Migut.D02292 Erythranthe guttata HOM05D006963 ORTHO05D008783 6.0e-266 921.4 994 54.6
AUR62014974 Chenopodium quinoa HOM05D006963 ORTHO05D008783 1.9e-259 899.8 1038 52.9
Hund08356 Selenicereus undatus HOM05D006963 ORTHO05D008783 7.8e-258 894.4 1030 52.0
Cpa.g.sc1.5 Carica papaya HOM05D006963 ORTHO05D008783 3.3e-256 889.0 963 55.3
GSVIVG01031463001 Vitis vinifera HOM05D006963 ORTHO05D008783 2.9e-252 875.9 1004 52.1
SGA_v2.0_scaffold27G11571 Striga asiatica HOM05D006963 ORTHO05D008783 3.5e-250 869.0 1003 50.0
Oeu008360.1 Olea europaea HOM05D006963 ORTHO05D008783 6.6e-241 838.2 986 49.7
Dinv16225 Davidia involucrata HOM05D006963 ORTHO05D008783 1.9e-235 820.1 616 73.9
ATR0329G003 Amborella trichopoda HOM05D006963 ORTHO05D008783 3.9e-233 812.4 1042 48.7
Os02g0823800 Oryza sativa ssp. japonica HOM05D006963 ORTHO05D008783 7.1e-219 765.0 1005 45.6
Zm00001eb190880 Zea mays HOM05D006963 ORTHO05D008783 3.9e-217 759.2 1018 45.2
HPP92_025769 Vanilla planifolia HOM05D006963 ORTHO05D008783 2.4e-214 750.0 981 46.7
Glyma.12G178700 Glycine max HOM05D006963 ORTHO05D008783 3.6e-194 682.9 575 65.6
SEGI_09379 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 1.8e-185 654.1 969 44.1
TWI79G0699 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 3.6e-178 629.8 581 60.4
Cc00_g22940 Coffea canephora HOM05D006963 ORTHO05D008783 3.0e-177 626.7 612 55.4
unitig_899.g15359 Utricularia gibba HOM05D006963 ORTHO05D008783 1.8e-158 564.3 947 40.3
Mapoly0011s0199 Marchantia polymorpha HOM05D006963 ORTHO05D008783 2.4e-150 537.3 1094 36.6
AagrBONN_evm.TU.Sc2ySwM_344.4789 Anthoceros agrestis HOM05D006963 ORTHO05D008783 7.8e-125 452.6 996 36.5
Pp3c19_6480 Physcomitrium patens HOM05D006963 ORTHO05D008783 1.0e-124 452.2 1108 34.4
Dinv16223 Davidia involucrata HOM05D006963 ORTHO05D008783 5.4e-118 429.9 383 61.4
Glyma.12G178600 Glycine max HOM05D006963 ORTHO05D008783 2.3e-100 371.3 395 50.4
SEGI_31087 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 2.7e-93 347.8 507 42.2
Actinidia20425 Actinidia chinensis HOM05D006963 ORTHO05D008783 3.0e-92 344.4 435 51.0
CDE04G1589 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 6.7e-92 343.2 420 51.2
CBR_g8254 Chara braunii HOM05D006963 ORTHO05D008783 1.4e-68 265.8 1153 27.1
CDE04G0208 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 4.5e-64 250.8 391 40.9
TAR623G1253 Trochodendron aralioides HOM05D006963 ORTHO05D008783 5.6e-38 164.1 208 48.6
TAR623G0981 Trochodendron aralioides HOM05D006963 ORTHO05D008783 2.8e-29 135.2 86 68.6
arahy.Tifrunner.gnm1.ann1.WJC7CQ Arachis hypogaea HOM05D006963 ORTHO05D008783 4.7e-29 134.4 254 36.2
arahy.Tifrunner.gnm1.ann1.YZCM4H Arachis hypogaea HOM05D006963 ORTHO05D008783 1.5e-27 129.4 272 36.8
SEGI_19036 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 2.0e-27 129.0 109 56.0
Psat0s1214g0160 Pisum sativum HOM05D006963 ORTHO05D008783 2.9e-26 125.2 92 63.0
CAN.G1432.11 Capsicum annuum HOM05D006963 ORTHO05D008783 4.9e-26 124.4 76 75.0
TAR623G0866 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.2e-21 109.8 92 58.7
MD11G1148100 Malus domestica HOM05D006963 ORTHO05D008783 4.2e-09 68.2 60 65.0
Pp3c7_26050 Physcomitrium patens HOM05D006963 ORTHO05D008783 5.1e-07 61.2 74 40.5


User provided reference genes

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