Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0028211 Lotus japonicus HOM05D004206 ORTHO05D003325 6.7e-113 411.0 253 100.0
Medtr7g099950 Medicago truncatula HOM05D004206 ORTHO05D003325 9.4e-59 231.1 255 62.0
Ca_08787_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 1.0e-57 227.6 256 60.5
Glyma.03G172400 Glycine max HOM05D004206 ORTHO05D003325 6.3e-55 218.4 256 60.9
Lalb_Chr25g0289551 Lupinus albus HOM05D004206 ORTHO05D003325 3.8e-52 209.1 254 58.3
Glyma.19G173300 Glycine max HOM05D004206 ORTHO05D003325 1.6e-50 203.8 256 59.0
VMungo1383G1995 Vigna mungo HOM05D004206 ORTHO05D003325 4.7e-50 202.2 255 58.8
Phvul.001G170100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 8.0e-50 201.4 255 58.0
Lalb_Chr20g0113171 Lupinus albus HOM05D004206 ORTHO05D003325 4.0e-49 199.1 254 59.4
arahy.Tifrunner.gnm1.ann1.72TEPU Arachis hypogaea HOM05D004206 ORTHO05D003325 5.7e-48 195.3 268 53.7
TPR.G21456 Trifolium pratense HOM05D004206 ORTHO05D003325 9.8e-48 194.5 215 61.4
Glyma.10G044400 Glycine max HOM05D004206 ORTHO05D003325 2.5e-43 179.9 259 48.6
Lalb_Chr21g0314341 Lupinus albus HOM05D004206 ORTHO05D003325 1.4e-38 164.1 259 47.5
Lalb_Chr06g0171041 Lupinus albus HOM05D004206 ORTHO05D003325 3.0e-36 156.4 254 43.7
Psat3g048840 Pisum sativum HOM05D004206 ORTHO05D003325 6.6e-36 155.2 204 58.8
Lalb_Chr02g0153081 Lupinus albus HOM05D004206 ORTHO05D003325 1.9e-35 153.7 258 45.3
Phvul.007G158100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 6.8e-33 145.2 246 45.1
VMungo0720G2610 Vigna mungo HOM05D004206 ORTHO05D003325 1.4e-30 137.5 249 42.2
Ca_09615_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 3.5e-29 132.9 231 43.7
Psat6g067720 Pisum sativum HOM05D004206 ORTHO05D003325 3.9e-28 129.4 199 53.8
Psat2g133080 Pisum sativum HOM05D000159 ORTHO05D000148 4.7e-26 122.5 195 53.3
FAN05G4716 Fragaria x ananassa HOM05D004206 ORTHO05D003325 1.8e-25 120.6 266 36.8
FvH4_6g14310 Fragaria vesca HOM05D004206 ORTHO05D003325 2.3e-25 120.2 266 36.8
FAN02G2861 Fragaria x ananassa HOM05D004206 ORTHO05D003325 2.3e-25 120.2 221 39.8
Atru.chr8.1956 Acer truncatum HOM05D004206 ORTHO05D003325 6.8e-25 118.6 242 40.1
FAN09G1551 Fragaria x ananassa HOM05D004206 ORTHO05D003325 1.2e-24 117.9 221 39.8
Medtr1g068825 Medicago truncatula HOM05D004206 ORTHO05D003325 2.6e-24 116.7 234 47.4
Lj5g0023302 Lotus japonicus HOM05D004206 ORTHO05D003325 5.8e-24 115.5 161 47.2
RcHm_v2.0_Chr3g0467301 Rosa chinensis HOM05D004206 ORTHO05D003325 1.7e-23 114.0 267 35.6
Haze_20742 Corylus avellana HOM05D004206 ORTHO05D003325 7.1e-22 108.6 186 54.3
Thecc.05G044400 Theobroma cacao HOM05D004206 ORTHO05D003325 1.6e-21 107.5 231 43.3
Cc06_g02970 Coffea canephora HOM05D004206 ORTHO05D003325 2.1e-21 107.1 267 35.6
Gohir.D09G153700 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.1e-21 107.1 220 45.9
ClCG10G020930 Citrullus lanatus HOM05D004206 ORTHO05D003325 4.6e-21 105.9 256 39.1
Duzib093G1984 Durio zibethinus HOM05D004206 ORTHO05D003325 6.0e-21 105.5 206 44.2
QL07p047329 Quercus lobata HOM05D004206 ORTHO05D003325 7.8e-21 105.1 254 41.3
Cfa017429 Carpinus fangiana HOM05D004206 ORTHO05D003325 1.0e-20 104.8 200 50.0
Dinv35636 Davidia involucrata HOM05D004206 ORTHO05D003325 1.3e-20 104.4 264 34.1
QL05p010542 Quercus lobata HOM05D004206 ORTHO05D003325 1.3e-20 104.4 254 41.3
GSVIVG01025530001 Vitis vinifera HOM05D004206 ORTHO05D003325 8.6e-20 101.7 270 35.2
CiPaw.09G188800 Carya illinoinensis HOM05D004206 ORTHO05D003325 1.5e-19 100.9 178 50.6
DCAR_009254 Daucus carota HOM05D004206 ORTHO05D003325 1.5e-19 100.9 254 34.3
MD04G1121200 Malus domestica HOM05D004206 ORTHO05D003325 1.2e-18 97.8 230 37.4
Gohir.A09G158300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.6e-18 97.4 206 49.5
Gorai.006G175200 Gossypium raimondii HOM05D004206 ORTHO05D003325 1.6e-18 97.4 204 50.5
Ciclev10012502m.g Citrus clementina HOM05D004206 ORTHO05D003325 2.8e-18 96.7 247 43.7
TPR.G25989 Trifolium pratense HOM05D004206 ORTHO05D003325 2.8e-18 96.7 150 40.7
Actinidia26442 Actinidia chinensis HOM05D004206 ORTHO05D003325 3.6e-18 96.3 268 32.5
Prupe.6G250300 Prunus persica HOM05D004206 ORTHO05D003325 3.6e-18 96.3 203 44.8
MELO3C009278.2 Cucumis melo HOM05D004206 ORTHO05D003325 6.2e-18 95.5 256 38.3
Nitab4.5_0000527g0130 Nicotiana tabacum HOM05D004206 ORTHO05D003325 6.2e-18 95.5 241 38.6
CsaV3_3G035080 Cucumis sativus L. HOM05D004206 ORTHO05D003325 1.1e-17 94.7 258 39.5
MD12G1138400 Malus domestica HOM05D004206 ORTHO05D003325 1.1e-17 94.7 228 37.7
PGSC0003DMG401019213 Solanum tuberosum HOM05D004206 ORTHO05D003325 2.4e-17 93.6 242 38.4
Nitab4.5_0000349g0070 Nicotiana tabacum HOM05D004206 ORTHO05D003325 3.1e-17 93.2 241 37.3
Oeu036176.1 Olea europaea HOM05D004206 ORTHO05D003325 3.1e-17 93.2 203 37.4
SGA_v2.0_scaffold126G33821 Striga asiatica HOM05D004206 ORTHO05D003325 3.1e-17 93.2 280 34.3
Oeu026485.2 Olea europaea HOM05D004206 ORTHO05D003325 5.2e-17 92.4 187 38.0
Duzib128G2059 Durio zibethinus HOM05D004206 ORTHO05D003325 1.2e-16 91.3 186 49.5
Hma1.2p1_0350F.1_g132380 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 1.2e-16 91.3 292 34.2
Hma1.2p1_1065F.1_g253750 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 1.2e-16 91.3 292 34.2
Hma1.2p1_1707F.1_g298550 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 3.4e-16 89.7 141 46.8
CiPaw.10G143300 Carya illinoinensis HOM05D004206 ORTHO05D003325 5.8e-16 89.0 184 45.1
Peaxi162Scf00039g01222 Petunia axillaris HOM05D004206 ORTHO05D003325 5.8e-16 89.0 259 36.7
Duzib106G1929 Durio zibethinus HOM05D004206 ORTHO05D003325 7.6e-16 88.6 162 48.1
Peaxi162Scf00407g00067 Petunia axillaris HOM05D004206 ORTHO05D003325 9.9e-16 88.2 193 42.5
Sopen10g035740 Solanum pennellii HOM05D004206 ORTHO05D003325 9.9e-16 88.2 267 36.3
Manes.09G086700 Manihot esculenta HOM05D004206 ORTHO05D003325 1.7e-15 87.4 178 48.9
TAR633G1790 Trochodendron aralioides HOM05D004206 ORTHO05D003325 2.2e-15 87.0 261 31.8
Gohir.A04G080300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.9e-15 86.7 172 38.4
Gorai.012G101500 Gossypium raimondii HOM05D004206 ORTHO05D003325 2.9e-15 86.7 227 40.5
CANSAT35G0311 Cannabis sativa HOM05D004206 ORTHO05D003325 3.8e-15 86.3 194 45.4
Potri.006G082100 Populus trichocarpa HOM05D004206 ORTHO05D003325 4.9e-15 85.9 178 48.9
Sed0018769 Sechium edule HOM05D004206 ORTHO05D003325 6.4e-15 85.5 178 51.1
AUR62041741 Chenopodium quinoa HOM05D004206 ORTHO05D003325 1.1e-14 84.7 219 39.3
Gohir.D04G119400 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.1e-14 84.7 193 44.0
TWI74G0821 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 1.1e-14 84.7 244 31.6
SalBow3G3817 Salvia bowleyana HOM05D004206 ORTHO05D003325 1.4e-14 84.3 255 32.5
AUR62037393 Chenopodium quinoa HOM05D004206 ORTHO05D003325 1.9e-14 84.0 219 36.1
Solyc10g086360.2 Solanum lycopersicum HOM05D004206 ORTHO05D003325 2.4e-14 83.6 265 37.0
CSS0004803 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 5.4e-14 82.4 217 32.7
Sabra06G0062000 Salix brachista HOM05D004206 ORTHO05D003325 5.4e-14 82.4 137 55.5
Rhsim05G0188200 Rhododendron simsii HOM05D004206 ORTHO05D003325 9.2e-14 81.6 208 34.6
Sc01g0003990 Simmondsia chinensis HOM05D004206 ORTHO05D003325 1.6e-13 80.9 155 40.6
Eucgr.K03159 Eucalyptus grandis HOM05D004206 ORTHO05D003325 2.1e-13 80.5 265 39.2
Oeu049209.1 Olea europaea HOM05D004206 ORTHO05D003325 2.7e-13 80.1 97 48.5
CSS0042901 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 3.5e-13 79.7 258 39.5
TWI53G0070 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 3.5e-13 79.7 244 34.8
Manes.08G076700 Manihot esculenta HOM05D004206 ORTHO05D003325 4.6e-13 79.3 149 36.9
Lj3C971T5 Lonicera japonica HOM05D004206 ORTHO05D003325 1.3e-12 77.8 268 31.3
vmacro20128 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 1.3e-12 77.8 191 40.3
TWI77G0356 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 3.9e-12 76.3 251 31.5
SalBow4G2008 Salvia bowleyana HOM05D004206 ORTHO05D003325 5.1e-12 75.9 149 43.0
PGSC0003DMG400008929 Solanum tuberosum HOM05D004206 ORTHO05D003325 6.6e-12 75.5 210 36.7
Nitab4.5_0002077g0110 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.1e-11 74.7 205 41.0
Nitab4.5_0009149g0020 Nicotiana tabacum HOM05D004206 ORTHO05D003325 1.9e-11 73.9 205 42.0
Aqoxy2G02033 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 2.5e-11 73.6 259 31.7
MSTRG.5685 Avicennia marina HOM05D004206 ORTHO05D003325 5.6e-11 72.4 141 36.2
Solyc09g010410.3 Solanum lycopersicum HOM05D004206 ORTHO05D003325 9.6e-11 71.6 250 33.2
Sopen09g005150 Solanum pennellii HOM05D004206 ORTHO05D003325 9.6e-11 71.6 253 32.8
Sc20g0004600 Simmondsia chinensis HOM05D004206 ORTHO05D003325 1.6e-10 70.9 128 37.5
Hund00876 Selenicereus undatus HOM05D004206 ORTHO05D003325 2.1e-10 70.5 208 31.2
Glyma.13G132002 Glycine max HOM05D004206 ORTHO05D003325 3.6e-10 69.7 40 80.0
HanXRQChr07g0196151 Helianthus annuus HOM05D004206 ORTHO05D003325 3.6e-10 69.7 143 48.3
Lsat_1_v5_gn_2_110540 Lactuca sativa HOM05D004206 ORTHO05D003325 3.6e-10 69.7 229 33.6
CDE09G0187 Ceratophyllum demersum HOM05D004206 ORTHO05D003325 6.2e-10 68.9 97 47.4
Lsat_1_v5_gn_1_55680 Lactuca sativa HOM05D004206 ORTHO05D003325 6.2e-10 68.9 125 41.6
vmacro08670 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 6.2e-10 68.9 146 50.7
MSTRG.19101 Avicennia marina HOM05D004206 ORTHO05D003325 8.1e-10 68.6 103 42.7
CDE02G3836 Ceratophyllum demersum HOM05D004206 ORTHO05D003325 8.1e-10 68.6 97 47.4
HanXRQChr14g0453751 Helianthus annuus HOM05D004206 ORTHO05D003325 8.1e-10 68.6 225 37.8
Lj2A99T58 Lonicera japonica HOM05D004206 ORTHO05D003325 1.4e-09 67.8 104 43.3
PGR004G1990 Punica granatum HOM05D004206 ORTHO05D003325 1.8e-09 67.4 259 30.5
TAR371G1160 Trochodendron aralioides HOM05D004206 ORTHO05D003325 4.0e-09 66.2 171 34.5
Actinidia13126 Actinidia chinensis HOM05D004206 ORTHO05D003325 5.2e-09 65.9 262 32.4
EL10Ac9g20956 Beta vulgaris HOM05D004206 ORTHO05D003325 5.2e-09 65.9 255 31.4
Migut.J00362 Erythranthe guttata HOM05D004206 ORTHO05D003325 9.0e-09 65.1 170 32.9
CAN.G97.20 Capsicum annuum HOM05D004206 ORTHO05D003325 1.5e-08 64.3 142 34.5
PGR004G0289 Punica granatum HOM05D004206 ORTHO05D003325 1.5e-08 64.3 147 33.3
PSO648G0001 Papaver somniferum HOM05D004206 ORTHO05D003325 2.6e-08 63.5 95 47.4
ATR0559G289 Amborella trichopoda HOM05D004206 ORTHO05D003325 3.4e-08 63.2 96 43.8
Lsat_1_v5_gn_1_55700 Lactuca sativa HOM05D004206 ORTHO05D003325 4.4e-08 62.8 89 46.1
HanXRQChr11g0349321 Helianthus annuus HOM05D004206 ORTHO05D003325 9.9e-08 61.6 66 53.0
PSO339G1969 Papaver somniferum HOM05D004206 ORTHO05D003325 9.9e-08 61.6 95 47.4
MSTRG.26756 Avicennia marina HOM05D004206 ORTHO05D003325 1.3e-07 61.2 136 36.0
COL.COLO4_14855 Corchorus olitorius HOM05D004206 ORTHO05D003325 1.3e-07 61.2 45 62.2
BcaC07g39726 Brassica carinata HOM05D008508 ORTHO05D003325 1.7e-07 60.8 86 43.0
C08p28980 Brassica napus HOM05D008508 ORTHO05D003325 1.7e-07 60.8 86 43.0
Aa31LG5G22930 Aethionema arabicum HOM05D008508 ORTHO05D003325 3.8e-07 59.7 44 61.4
AT3G53670 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 3.8e-07 59.7 91 40.7
A07p21780 Brassica napus HOM05D008508 ORTHO05D003325 3.8e-07 59.7 71 49.3
BolC8t50501H Brassica oleracea HOM05D008508 ORTHO05D003325 4.9e-07 59.3 86 41.9
THA.LOC104805432 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 4.9e-07 59.3 186 32.8
Gohir.A11G326100 Gossypium hirsutum HOM05D004206 ORTHO05D003325 6.4e-07 58.9 169 36.7
CARHR163580 Cardamine hirsuta HOM05D008508 ORTHO05D003325 8.4e-07 58.5 64 48.4
CARHR132120 Cardamine hirsuta HOM05D008508 ORTHO05D003325 1.1e-06 58.2 107 39.3
BolC4t28099H Brassica oleracea HOM05D008508 ORTHO05D003325 1.4e-06 57.8 92 53.3
BraA07t29860Z Brassica rapa HOM05D008508 ORTHO05D003325 1.4e-06 57.8 84 42.9
ECA238G1623 Erigeron canadensis HOM05D000150 ORTHO05D000108 1.4e-06 57.8 173 44.5
ECA248G2846 Erigeron canadensis HOM05D004206 ORTHO05D003325 1.4e-06 57.8 45 60.0
Eucgr.A01242 Eucalyptus grandis HOM05D004206 ORTHO05D003325 1.4e-06 57.8 157 33.8
Aqoxy4G02996 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 1.9e-06 57.4 174 31.6
A09p46660 Brassica napus HOM05D008508 ORTHO05D003325 1.9e-06 57.4 134 30.6
BraA09t40129Z Brassica rapa HOM05D008508 ORTHO05D003325 1.9e-06 57.4 84 42.9
Gorai.007G375400 Gossypium raimondii HOM05D004206 ORTHO05D003325 1.9e-06 57.4 75 45.3
Sp5g08700 Schrenkiella parvula HOM05D008508 ORTHO05D003325 1.9e-06 57.4 154 34.4
BcaB06g28998 Brassica carinata HOM05D008508 ORTHO05D003325 2.4e-06 57.0 44 63.6
Gohir.D11G345000 Gossypium hirsutum HOM05D004206 ORTHO05D003325 2.4e-06 57.0 75 45.3
PGR004G2702 Punica granatum HOM05D004206 ORTHO05D003325 2.4e-06 57.0 86 43.0
SGA_v2.0_scaffold75G24932 Striga asiatica HOM05D004206 ORTHO05D003325 2.4e-06 57.0 193 32.1
BolC6t37349H Brassica oleracea HOM05D008508 ORTHO05D003325 3.2e-06 56.6 64 45.3
BraA05t19816Z Brassica rapa HOM05D008508 ORTHO05D003325 3.2e-06 56.6 48 58.3
BolC4t22647H Brassica oleracea HOM05D008508 ORTHO05D003325 4.2e-06 56.2 44 61.4
Hma1.2p1_1004F.1_g246870 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 4.2e-06 56.2 40 65.0
Hma1.2p1_1535F.1_g289470 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 4.2e-06 56.2 40 65.0
SEGI_05191 Sequoiadendron giganteum HOM05D004206 ORTHO05D003325 5.4e-06 55.8 166 33.1
BcaB02g09283 Brassica carinata HOM05D008508 ORTHO05D003325 7.1e-06 55.5 79 43.0
Thhalv10010719m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 7.1e-06 55.5 88 39.8
Aa31LG10G9300 Aethionema arabicum HOM05D008508 ORTHO05D003325 9.3e-06 55.1 135 32.6
AL5G34640 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 9.3e-06 55.1 147 32.0
C04p65950 Brassica napus HOM05D008508 ORTHO05D003325 9.3e-06 55.1 92 52.2
HPP92_000797 Vanilla planifolia HOM05D004206 ORTHO05D003325 9.3e-06 55.1 99 39.4


User provided reference genes

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