Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0028043 Lotus japonicus HOM05D007056 ORTHO05D008278 4.0e-156 554.7 272 100.0
Ca_08534_v3 Cicer arietinum L. HOM05D007056 ORTHO05D008278 3.8e-122 441.8 286 79.0
Glyma.19G149400 Glycine max HOM05D007056 ORTHO05D008278 8.2e-117 424.1 268 79.1
VMungo1383G1827 Vigna mungo HOM05D007056 ORTHO05D008278 4.5e-115 418.3 283 76.3
arahy.Tifrunner.gnm1.ann1.DK1M71 Arachis hypogaea HOM05D007056 ORTHO05D008278 5.5e-113 411.4 266 77.4
Medtr7g093540 Medicago truncatula HOM05D007056 ORTHO05D008278 1.0e-111 407.1 279 75.6
Lalb_Chr18g0048001 Lupinus albus HOM05D007056 ORTHO05D008278 1.8e-111 406.4 253 79.8
arahy.Tifrunner.gnm1.ann1.LTU6F0 Arachis hypogaea HOM05D007056 ORTHO05D008278 3.3e-110 402.1 261 78.2
Phvul.001G143900 Phaseolus vulgaris HOM05D007056 ORTHO05D008278 1.1e-108 397.1 281 73.7
Potri.016G060000 Populus trichocarpa HOM05D007056 ORTHO05D008278 3.9e-103 378.6 260 72.3
CANSAT64G0992 Cannabis sativa HOM05D007056 ORTHO05D008278 1.5e-102 376.7 245 75.1
CiPaw.09G028900 Carya illinoinensis HOM05D007056 ORTHO05D008278 1.5e-102 376.7 256 73.0
RcHm_v2.0_Chr3g0479281 Rosa chinensis HOM05D007056 ORTHO05D008278 3.3e-102 375.6 219 80.4
Nn2g15729 Nelumbo nucifera HOM05D007056 ORTHO05D008278 4.3e-102 375.2 272 70.2
QL07p024320 Quercus lobata HOM05D007056 ORTHO05D008278 4.3e-102 375.2 264 72.3
QL07p024358 Quercus lobata HOM05D007056 ORTHO05D008278 4.3e-102 375.2 264 72.3
FAN09G4108 Fragaria x ananassa HOM05D007056 ORTHO05D008278 9.7e-102 374.0 233 78.5
Lj2A365G87 Lonicera japonica HOM05D007056 ORTHO05D008278 4.8e-101 371.7 192 88.0
Duzib093G0790 Durio zibethinus HOM05D007056 ORTHO05D008278 8.2e-101 370.9 213 82.6
Prupe.7G080200 Prunus persica HOM05D007056 ORTHO05D008278 1.1e-100 370.5 235 77.0
Os02g0774500 Oryza sativa ssp. japonica HOM05D007056 ORTHO05D008278 1.8e-100 369.8 196 86.2
PGR142G3072 Punica granatum HOM05D007056 ORTHO05D008278 1.8e-100 369.8 275 68.7
Gorai.012G099400 Gossypium raimondii HOM05D007056 ORTHO05D008278 2.4e-100 369.4 220 79.1
Gohir.D04G089300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 3.1e-100 369.0 253 71.1
Sabra16G0062800 Salix brachista HOM05D007056 ORTHO05D008278 9.1e-100 367.5 260 70.0
TWI77G0776 Tripterygium wilfordii HOM05D007056 ORTHO05D008278 9.1e-100 367.5 251 72.1
Cfa020149 Carpinus fangiana HOM05D007056 ORTHO05D008278 1.2e-99 367.1 262 70.6
CSS0008084 Camellia sinensis var. sinensis HOM05D007056 ORTHO05D008278 1.5e-99 366.7 192 87.5
Actinidia38590 Actinidia chinensis HOM05D007056 ORTHO05D008278 2.0e-99 366.3 194 85.6
EL10Ac3g06891 Beta vulgaris HOM05D007056 ORTHO05D008278 2.6e-99 365.9 235 74.9
FAN14G2508 Fragaria x ananassa HOM05D007056 ORTHO05D008278 3.4e-99 365.5 261 71.3
Sp3g10270 Schrenkiella parvula HOM05D007056 ORTHO05D008278 4.5e-99 365.2 249 73.9
TPR.G35780 Trifolium pratense HOM05D007056 ORTHO05D008278 4.5e-99 365.2 239 77.0
Cpa.g.sc85.61 Carica papaya HOM05D007056 ORTHO05D008278 7.7e-99 364.4 261 72.0
Thecc.05G174400 Theobroma cacao HOM05D007056 ORTHO05D008278 1.3e-98 363.6 219 79.0
AT3G12040 Arabidopsis thaliana HOM05D007056 ORTHO05D008278 2.2e-98 362.8 226 76.5
CsaV3_3G038650 Cucumis sativus L. HOM05D007056 ORTHO05D008278 2.2e-98 362.8 217 78.3
Zm00001eb256530 Zea mays HOM05D007056 ORTHO05D008278 2.2e-98 362.8 200 84.0
Cc06_g15700 Coffea canephora HOM05D007056 ORTHO05D008278 5.0e-98 361.7 244 73.0
Dinv16370 Davidia involucrata HOM05D007056 ORTHO05D008278 5.0e-98 361.7 251 70.5
BraA05t22526Z Brassica rapa HOM05D007056 ORTHO05D008278 6.5e-98 361.3 247 70.4
Atru.chr8.1149 Acer truncatum HOM05D007056 ORTHO05D008278 8.5e-98 360.9 248 72.6
Aqoxy2G00097 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 8.5e-98 360.9 238 72.7
A05p37300 Brassica napus HOM05D007056 ORTHO05D008278 8.5e-98 360.9 247 70.4
CAN.G128.50 Capsicum annuum HOM05D007056 ORTHO05D008278 8.5e-98 360.9 196 87.2
ATR0598G297 Amborella trichopoda HOM05D007056 ORTHO05D008278 1.1e-97 360.5 194 85.6
Carub.0003s1138 Capsella rubella HOM05D007056 ORTHO05D008278 1.4e-97 360.1 248 72.6
CARHR086600 Cardamine hirsuta HOM05D007056 ORTHO05D008278 1.4e-97 360.1 237 73.8
AUR62011999 Chenopodium quinoa HOM05D007056 ORTHO05D008278 1.9e-97 359.8 235 75.3
BcaC05g29295 Brassica carinata HOM05D007056 ORTHO05D008278 2.5e-97 359.4 235 73.6
BcaB06g25552 Brassica carinata HOM05D007056 ORTHO05D008278 3.2e-97 359.0 234 74.4
TAR369G0080 Trochodendron aralioides HOM05D007056 ORTHO05D008278 5.5e-97 358.2 268 66.8
Eucgr.K01848 Eucalyptus grandis HOM05D007056 ORTHO05D008278 7.2e-97 357.8 193 83.9
AL3G23650 Arabidopsis lyrata HOM05D007056 ORTHO05D008278 9.4e-97 357.5 226 76.1
PGSC0003DMG400023706 Solanum tuberosum HOM05D007056 ORTHO05D008278 9.4e-97 357.5 196 86.2
MBI19_g17420_MAGBIO Magnolia biondii HOM05D007056 ORTHO05D008278 1.6e-96 356.7 216 77.8
Ciclev10012466m.g Citrus clementina HOM05D007056 ORTHO05D008278 2.1e-96 356.3 269 67.3
MD14G1054600 Malus domestica HOM05D007056 ORTHO05D008278 2.1e-96 356.3 267 68.2
Sopen10g031100 Solanum pennellii HOM05D007056 ORTHO05D008278 4.7e-96 355.1 265 67.9
C05p55770 Brassica napus HOM05D007056 ORTHO05D008278 6.1e-96 354.8 236 73.3
BolC5t34244H Brassica oleracea HOM05D007056 ORTHO05D008278 6.1e-96 354.8 236 73.3
Thhalv10021378m.g Eutrema salsugineum HOM05D007056 ORTHO05D008278 7.9e-96 354.4 234 75.2
Solyc10g080560.2 Solanum lycopersicum HOM05D007056 ORTHO05D008278 1.0e-95 354.0 265 67.5
SGA_v2.0_scaffold69G23055 Striga asiatica HOM05D007056 ORTHO05D008278 1.0e-95 354.0 230 72.6
Ah.04g152820 Amaranthus hybridus HOM05D007056 ORTHO05D008278 1.4e-95 353.6 252 70.6
Nitab4.5_0001079g0030 Nicotiana tabacum HOM05D007056 ORTHO05D008278 1.4e-95 353.6 196 84.2
COL.COLO4_05956 Corchorus olitorius HOM05D007056 ORTHO05D008278 1.8e-95 353.2 191 84.8
THA.LOC104809936 Tarenaya hassleriana HOM05D007056 ORTHO05D008278 2.3e-95 352.8 217 76.5
AUR62015338 Chenopodium quinoa HOM05D007056 ORTHO05D008278 2.0e-94 349.7 248 71.8
HanXRQChr01g0010031 Helianthus annuus HOM05D007056 ORTHO05D008278 4.4e-94 348.6 255 68.2
Rhsim04G0094900 Rhododendron simsii HOM05D007056 ORTHO05D008278 4.4e-94 348.6 207 77.3
HPP92_004381 Vanilla planifolia HOM05D007056 ORTHO05D008278 1.7e-93 346.7 194 84.0
DCAR_019779 Daucus carota HOM05D007056 ORTHO05D008278 4.5e-91 338.6 248 66.5
CDE06G2434 Ceratophyllum demersum HOM05D007056 ORTHO05D008278 1.0e-90 337.4 195 77.4
Peaxi162Scf00249g01221 Petunia axillaris HOM05D007056 ORTHO05D008278 3.8e-90 335.5 272 64.0
unitig_27.g25110 Utricularia gibba HOM05D007056 ORTHO05D008278 8.5e-90 334.3 189 79.4
GSVIVG01033475001 Vitis vinifera HOM05D007056 ORTHO05D008278 1.1e-89 334.0 268 64.6
Aa31sc80G100 Aethionema arabicum HOM05D007056 ORTHO05D008278 7.2e-89 331.3 246 67.5
Lsat_1_v5_gn_5_165300 Lactuca sativa HOM05D007056 ORTHO05D008278 1.2e-88 330.5 236 69.1
SEGI_25756 Sequoiadendron giganteum HOM05D007056 ORTHO05D008278 3.6e-88 328.9 190 79.5
SMO146G0068 Selaginella moellendorffii HOM05D007056 ORTHO05D008278 3.0e-87 325.9 230 69.6
AagrBONN_evm.TU.Sc2ySwM_344.2853 Anthoceros agrestis HOM05D007056 ORTHO05D008278 5.2e-87 325.1 190 77.4
Psat3g067120 Pisum sativum HOM05D007056 ORTHO05D008278 2.0e-86 323.2 169 88.2
Mapoly0003s0280 Marchantia polymorpha HOM05D007056 ORTHO05D008278 3.1e-84 315.8 190 73.7
Hund24814 Selenicereus undatus HOM05D007056 ORTHO05D008278 7.0e-84 314.7 291 60.1
Aqoxy3G01855 Aquilegia oxysepala HOM05D007056 ORTHO05D008278 3.8e-82 308.9 234 65.0
PSO675G9168 Papaver somniferum HOM05D007056 ORTHO05D008278 2.5e-81 306.2 259 61.4
PSO541G5037 Papaver somniferum HOM05D007056 ORTHO05D008278 4.2e-81 305.4 259 61.4
BcaB06g25551 Brassica carinata HOM05D007056 ORTHO05D008278 3.6e-80 302.4 165 83.0
Pp3c1_41490 Physcomitrium patens HOM05D007056 ORTHO05D008278 8.8e-79 297.7 274 56.9
ECA248G2501 Erigeron canadensis HOM05D007056 ORTHO05D008278 1.5e-78 297.0 184 75.5
vmacro22110 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 5.7e-78 295.0 273 56.4
Oeu024494.3 Olea europaea HOM05D007056 ORTHO05D008278 2.7e-75 286.2 227 64.8
CBR_g48019 Chara braunii HOM05D000019 ORTHO05D000002 5.0e-74 282.0 189 67.2
ECA248G2516 Erigeron canadensis HOM05D007056 ORTHO05D008278 1.2e-72 277.3 163 76.7
FvH4_6g21980 Fragaria vesca HOM05D007056 ORTHO05D008278 2.7e-72 276.2 209 69.4
Sed0027134 Sechium edule HOM05D007056 ORTHO05D008278 2.8e-69 266.2 214 65.4
Psat3g067080 Pisum sativum HOM05D007056 ORTHO05D008278 1.1e-65 254.2 178 74.2
Psat3g067040 Pisum sativum HOM05D007056 ORTHO05D008278 1.2e-62 244.2 235 59.6
Gohir.A04G057300 Gossypium hirsutum HOM05D007056 ORTHO05D008278 6.6e-58 228.4 148 75.7
Migut.J01851 Erythranthe guttata HOM05D007056 ORTHO05D008278 4.3e-57 225.7 121 82.6
ECA248G3402 Erigeron canadensis HOM05D000009 ORTHO05D000008 3.5e-51 206.1 121 76.9
ClCG10G017660 Citrullus lanatus HOM05D007056 ORTHO05D008278 3.9e-50 202.6 223 52.0
MELO3C009610.2 Cucumis melo HOM05D007056 ORTHO05D008278 4.0e-47 192.6 243 48.6
Manes.08G042900 Manihot esculenta HOM05D007056 ORTHO05D008278 1.2e-46 191.0 98 90.8
FAN02G0430 Fragaria x ananassa HOM05D007056 ORTHO05D008278 7.5e-46 188.3 137 72.3
Haze_20013 Corylus avellana HOM05D007056 ORTHO05D008278 1.0e-42 177.9 483 31.1
Sc13g0002370 Simmondsia chinensis HOM05D007056 ORTHO05D008278 1.0e-42 177.9 97 83.5
Nitab4.5_0001440g0050 Nicotiana tabacum HOM05D007056 ORTHO05D008278 2.3e-39 166.8 91 82.4
PRCOL_00003183 Prasinoderma coloniale HOM05D007056 ORTHO05D008278 2.7e-35 153.3 215 45.1
Hma1.2p1_0645F.1_g194860 Hydrangea macrophylla HOM05D007056 ORTHO05D008278 1.5e-33 147.5 73 87.7
ECA233G2032 Erigeron canadensis HOM05D007056 ORTHO05D008278 4.4e-30 136.0 73 82.2
SHI31778 Sapria himalayana HOM05D007056 ORTHO05D008278 3.5e-27 126.3 72 76.4
vmacro22990 Vaccinium macrocarpon HOM05D007056 ORTHO05D008278 2.1e-16 90.5 93 51.6
SHI31775 Sapria himalayana HOM05D000002 ORTHO05D000001 3.1e-07 60.1 35 82.9


User provided reference genes

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