Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 0.0e+00 1582.0 809 100.0
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 0.0e+00 1213.0 869 77.2
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 1.2e-267 926.8 894 59.5
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 2.6e-267 925.6 897 60.1
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 1.3e-258 896.7 885 58.0
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 9.8e-251 870.5 862 60.0
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 9.8e-251 870.5 894 57.5
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 4.1e-249 865.1 891 57.8
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 3.3e-246 855.5 874 57.4
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 1.4e-241 840.1 878 56.4
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 2.4e-228 796.2 871 55.1
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 1.6e-221 773.5 897 53.0
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 5.6e-214 748.4 800 54.2
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 1.2e-208 730.7 627 64.3
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 7.4e-206 721.5 890 50.2
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 1.7e-202 710.3 945 47.9
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 1.9e-201 706.8 811 51.3
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 7.1e-201 704.9 716 54.6
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 1.5e-195 687.2 741 52.4
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 8.4e-194 681.4 871 48.6
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 1.6e-192 677.2 743 53.0
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 3.1e-188 662.9 852 47.4
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 1.1e-185 654.4 860 47.3
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 1.9e-185 653.7 655 59.2
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 5.5e-185 652.1 718 51.7
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 9.4e-185 651.4 769 49.8
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 3.9e-183 646.0 719 51.6
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.7e-181 640.6 862 45.2
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 1.8e-180 637.1 713 51.6
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 1.8e-180 637.1 717 50.2
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 3.1e-180 636.3 720 51.8
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 1.5e-179 634.0 707 50.4
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 1.5e-179 634.0 884 45.0
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 1.7e-178 630.6 727 50.3
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.2e-178 630.2 850 46.8
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 5.5e-177 625.5 853 46.2
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 5.5e-177 625.5 850 46.5
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 7.2e-177 625.2 711 53.2
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 9.4e-177 624.8 863 44.0
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 2.1e-176 623.6 887 44.3
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.0e-175 621.3 890 43.4
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 1.4e-175 620.9 876 44.3
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 8.8e-175 618.2 705 50.5
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 2.0e-174 617.1 654 52.3
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 2.2e-173 613.6 715 49.8
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 4.1e-172 609.4 845 45.3
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 1.5e-171 607.4 726 48.3
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 1.1e-169 601.3 622 53.5
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 4.2e-169 599.4 727 49.0
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 6.7e-167 592.0 768 46.7
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 1.1e-166 591.3 768 46.6
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 2.2e-165 587.0 712 49.0
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 1.4e-164 584.3 720 47.4
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 3.1e-164 583.2 883 43.6
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 2.0e-163 580.5 708 48.3
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 2.6e-163 580.1 841 43.0
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 1.3e-162 577.8 842 45.4
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 2.9e-162 576.6 714 48.0
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 6.5e-162 575.5 822 43.1
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 7.2e-161 572.0 855 44.4
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.2e-160 571.2 856 44.4
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 3.6e-160 569.7 617 51.4
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 3.6e-160 569.7 807 43.0
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 5.2e-159 565.8 739 45.5
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 1.2e-158 564.7 787 43.5
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 2.4e-156 557.0 825 43.9
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 2.0e-155 553.9 706 46.3
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 1.3e-154 551.2 741 47.9
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 3.8e-154 549.7 840 41.9
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 3.0e-151 540.0 592 53.2
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 4.0e-151 539.7 730 44.5
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 1.5e-150 537.7 845 40.7
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 1.3e-149 534.6 805 42.0
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 6.3e-149 532.3 655 47.0
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.4e-148 531.2 899 41.3
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 1.0e-146 525.0 723 43.4
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 6.6e-146 522.3 706 45.5
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 3.3e-145 520.0 700 45.7
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 7.2e-145 518.8 700 45.3
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 7.2e-145 518.8 652 47.2
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 2.1e-144 517.3 710 43.9
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 1.4e-143 514.6 676 45.4
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 1.8e-143 514.2 656 46.2
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 6.8e-143 512.3 658 46.7
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.5e-142 511.1 544 51.8
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 2.6e-142 510.4 658 46.5
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 4.4e-142 509.6 658 46.4
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 7.5e-142 508.8 872 39.7
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 2.8e-141 506.9 658 46.7
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 4.9e-141 506.1 654 46.8
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 1.1e-140 505.0 654 46.8
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 1.8e-140 504.2 654 46.8
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 2.4e-140 503.8 699 45.6
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 1.6e-139 501.1 664 43.1
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 2.0e-139 500.7 702 43.7
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 5.9e-139 499.2 663 46.2
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 1.0e-138 498.4 705 43.3
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 2.9e-138 496.9 658 45.6
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 3.8e-138 496.5 669 45.1
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 5.6e-137 492.7 849 40.6
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 2.4e-132 477.2 584 47.1
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 6.0e-131 472.6 780 39.9
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 3.0e-130 470.3 708 41.0
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 3.3e-129 466.8 748 42.2
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 1.7e-125 454.5 902 36.6
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 1.0e-122 445.3 617 44.4
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 1.5e-121 441.4 692 40.3
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 4.4e-118 429.9 662 43.2
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 4.4e-118 429.9 662 43.2
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 5.6e-113 412.9 459 52.1
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 3.6e-112 410.2 478 51.5
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 5.8e-110 402.9 627 43.4
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.9e-108 397.9 680 38.7
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 3.5e-107 393.7 674 38.7
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 2.5e-105 387.5 357 58.3
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 4.4e-102 376.7 609 40.7
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 6.4e-101 372.9 454 48.9
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 7.1e-100 369.4 677 36.0
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 3.6e-96 357.1 459 46.8
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 2.4e-95 354.4 459 47.3
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 2.9e-93 347.4 343 56.0
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.2e-92 344.0 699 33.9
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 3.5e-91 340.5 527 42.3
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 5.3e-87 326.6 609 36.6
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.0e-82 312.4 707 32.7
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 1.0e-82 312.4 707 32.7
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 7.4e-81 306.2 462 42.9
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 2.3e-66 258.1 310 49.7
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 5.1e-66 256.9 768 30.1
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 2.8e-64 251.1 282 49.3
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 4.5e-62 243.8 656 31.6
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.4e-58 232.3 448 36.2
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.0e-57 228.4 227 55.5
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.4e-55 222.2 389 37.5
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 1.0e-53 216.1 633 31.9
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 1.4e-47 195.7 262 47.3
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 1.2e-43 182.6 197 52.3
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 5.2e-42 177.2 259 43.2
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 4.4e-41 174.1 348 36.5
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 1.3e-40 172.6 339 33.6
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 6.5e-37 160.2 171 53.2
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.6e-35 155.6 273 38.5
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 2.7e-35 154.8 236 44.1
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 2.3e-34 151.8 273 40.7
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 2.0e-33 148.7 230 39.6
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 4.4e-33 147.5 202 47.0
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 8.3e-32 143.3 146 48.6
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 8.3e-32 143.3 216 45.4
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 3.5e-30 137.9 163 48.5
TPR.G23930 Trifolium pratense HOM05D003594 ORTHO05D004268 2.3e-29 135.2 255 38.8
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 1.2e-25 122.9 152 46.7
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 2.0e-25 122.1 142 46.5
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 9.2e-23 113.2 156 46.8
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 5.0e-21 107.5 178 37.1
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 5.6e-20 104.0 268 35.1
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 5.2e-18 97.4 120 44.2
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 6.8e-18 97.1 185 37.3
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 5.8e-17 94.0 121 43.8
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 1.7e-16 92.4 86 57.0
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 6.4e-16 90.5 141 39.7
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 1.4e-15 89.4 81 53.1
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 1.4e-15 89.4 81 53.1
Ciclev10030203m.g Citrus clementina HOM05D003594 ORTHO05D026973 1.4e-15 89.4 115 45.2
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 4.1e-15 87.8 81 51.9
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 4.1e-15 87.8 81 51.9
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 5.4e-15 87.4 74 60.8
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 9.2e-15 86.7 137 38.0
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 1.2e-14 86.3 183 39.3
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 3.5e-14 84.7 88 44.3
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 6.0e-14 84.0 81 50.6
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 6.0e-14 84.0 81 50.6
TPR.G23814 Trifolium pratense HOM05D003594 ORTHO05D411989 1.7e-13 82.4 85 54.1
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 2.3e-13 82.0 238 30.7
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 2.3e-13 82.0 118 44.9
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 3.9e-13 81.3 81 49.4
Haze_02504 Corylus avellana HOM05D003594 ORTHO05D026973 8.6e-13 80.1 95 48.4
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 7.3e-12 77.0 74 52.7
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 1.6e-11 75.9 74 51.4
Psat0s3125g0040 Pisum sativum HOM05D003335 ORTHO05D003853 8.9e-10 70.1 69 55.1
Glyma.14G085550 Glycine max HOM05D003594 ORTHO05D004268 7.5e-09 67.0 61 59.0
Actinidia36694 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.7e-08 65.9 66 56.1
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 9.2e-07 60.1 123 32.5
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 4.6e-06 57.8 78 46.2
SHI24305 Sapria himalayana HOM05D000023 ORTHO05D000014 4.6e-06 57.8 59 47.5
MSTRG.26055 Avicennia marina HOM05D003594 ORTHO05D004268 6.0e-06 57.4 86 37.2
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 6.0e-06 57.4 78 46.2
QL04p046243 Quercus lobata HOM05D003594 ORTHO05D026973 6.0e-06 57.4 100 40.0
Prupe.6G159300 Prunus persica HOM05D003594 ORTHO05D004268 7.8e-06 57.0 104 32.7


User provided reference genes

Program Settings