Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0027910 Lotus japonicus HOM05D006043 ORTHO05D007309 3.1e-78 295.0 148 100.0
Glyma.19G190400 Glycine max HOM05D006043 ORTHO05D007309 6.5e-60 234.2 148 79.7
Glyma.03G190100 Glycine max HOM05D006043 ORTHO05D007309 5.7e-56 221.1 146 77.4
VMungo1383G3657 Vigna mungo HOM05D006043 ORTHO05D007309 5.7e-56 221.1 148 74.3
Ca_08959_v3 Cicer arietinum L. HOM05D006043 ORTHO05D007309 1.3e-55 219.9 147 75.5
Medtr7g103520 Medicago truncatula HOM05D006043 ORTHO05D007309 8.2e-55 217.2 148 75.7
Lalb_Chr20g0112261 Lupinus albus HOM05D006043 ORTHO05D007309 2.0e-53 212.6 148 74.3
TPR.G7024 Trifolium pratense HOM05D006043 ORTHO05D007309 2.2e-52 209.1 148 74.3
Phvul.001G185700 Phaseolus vulgaris HOM05D006043 ORTHO05D007309 1.1e-51 206.8 148 70.3
Atru.chr8.1654 Acer truncatum HOM05D006043 ORTHO05D007309 2.7e-50 202.2 154 68.2
Cpa.g.sc5.89 Carica papaya HOM05D006043 ORTHO05D007309 2.0e-48 196.1 148 68.2
FvH4_6g17700 Fragaria vesca HOM05D006043 ORTHO05D007309 4.4e-48 194.9 154 65.6
RcHm_v2.0_Chr3g0471911 Rosa chinensis HOM05D006043 ORTHO05D007309 1.3e-47 193.4 150 65.3
FAN02G0054 Fragaria x ananassa HOM05D006043 ORTHO05D007309 2.2e-47 192.6 154 64.9
Psat3g036320 Pisum sativum HOM05D006043 ORTHO05D007309 2.4e-46 189.1 148 66.2
MD14G1014200 Malus domestica HOM05D006043 ORTHO05D007309 2.7e-45 185.7 146 65.1
Prupe.7G119300 Prunus persica HOM05D006043 ORTHO05D007309 3.5e-45 185.3 148 66.2
Rhsim06G0171100 Rhododendron simsii HOM05D006043 ORTHO05D007309 3.5e-45 185.3 152 61.2
ClCG10G019450 Citrullus lanatus HOM05D006043 ORTHO05D007309 4.5e-45 184.9 149 64.4
Potri.013G014300 Populus trichocarpa HOM05D006043 ORTHO05D007309 7.7e-45 184.1 155 65.2
CsaV3_3G036730 Cucumis sativus L. HOM05D006043 ORTHO05D007309 1.0e-44 183.7 149 64.4
Manes.08G019800 Manihot esculenta HOM05D006043 ORTHO05D007309 1.7e-44 183.0 151 64.2
MELO3C009427.2 Cucumis melo HOM05D006043 ORTHO05D007309 5.0e-44 181.4 149 62.4
Ciclev10013017m.g Citrus clementina HOM05D006043 ORTHO05D007309 6.5e-44 181.0 150 64.0
MD12G1016000 Malus domestica HOM05D006043 ORTHO05D007309 6.5e-44 181.0 150 63.3
QL07p040748 Quercus lobata HOM05D006043 ORTHO05D007309 6.5e-44 181.0 153 63.4
CiPaw.10G004600 Carya illinoinensis HOM05D006043 ORTHO05D007309 3.3e-43 178.7 154 63.6
Eucgr.A01560 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.8e-42 175.6 143 61.5
Duzib106G1072 Durio zibethinus HOM05D006043 ORTHO05D007309 3.6e-42 175.3 158 58.9
Gohir.D09G138000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 6.1e-42 174.5 151 57.6
Gorai.006G158600 Gossypium raimondii HOM05D006043 ORTHO05D007309 8.0e-42 174.1 151 57.0
Nitab4.5_0010125g0030 Nicotiana tabacum HOM05D006043 ORTHO05D007309 8.0e-42 174.1 154 60.4
Cfa016525 Carpinus fangiana HOM05D006043 ORTHO05D007309 1.8e-41 172.9 154 63.6
vmacro12136 Vaccinium macrocarpon HOM05D006043 ORTHO05D007309 1.8e-41 172.9 152 59.2
Haze_19524 Corylus avellana HOM05D006043 ORTHO05D007309 2.3e-41 172.6 153 62.1
CANSAT80G1206 Cannabis sativa HOM05D006043 ORTHO05D007309 4.0e-41 171.8 154 59.1
Sc07g0005350 Simmondsia chinensis HOM05D006043 ORTHO05D007309 6.8e-41 171.0 147 59.2
EL10Ac7g17005 Beta vulgaris HOM05D006043 ORTHO05D007309 1.1e-38 163.7 147 54.4
Gohir.A04G066428 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.1e-38 163.7 146 58.2
CSS0040940 Camellia sinensis var. sinensis HOM05D006043 ORTHO05D007309 1.4e-38 163.3 155 56.8
Gohir.A09G136312 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.4e-38 163.3 160 53.1
Sed0027852 Sechium edule HOM05D006043 ORTHO05D007309 1.4e-38 163.3 149 59.7
Gohir.D04G105000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.8e-38 162.9 150 57.3
Gorai.009G408700 Gossypium raimondii HOM05D006043 ORTHO05D007309 1.8e-38 162.9 150 57.3
TWI53G1797 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 3.1e-38 162.2 108 72.2
Duzib093G0521 Durio zibethinus HOM05D006043 ORTHO05D007309 7.0e-38 161.0 158 57.6
HanXRQChr09g0259401 Helianthus annuus HOM05D006043 ORTHO05D007309 7.0e-38 161.0 145 60.0
Ah.08g211020 Amaranthus hybridus HOM05D006043 ORTHO05D007309 9.2e-38 160.6 145 55.2
Cc00_g32800 Coffea canephora HOM05D006043 ORTHO05D007309 1.2e-37 160.2 149 59.7
MBI01_g32535_MAGBIO Magnolia biondii HOM05D006043 ORTHO05D007309 2.7e-37 159.1 142 57.7
COL.COLO4_29832 Corchorus olitorius HOM05D006043 ORTHO05D007309 3.5e-37 158.7 155 54.8
Sp3g08330 Schrenkiella parvula HOM05D006043 ORTHO05D007309 3.5e-37 158.7 146 57.5
Peaxi162Scf00412g00063 Petunia axillaris HOM05D006043 ORTHO05D007309 4.5e-37 158.3 154 58.4
Sopen09g003740 Solanum pennellii HOM05D006043 ORTHO05D007309 4.5e-37 158.3 151 58.3
Oeu040545.1 Olea europaea HOM05D006043 ORTHO05D007309 1.0e-36 157.1 152 59.9
BcaB03g11578 Brassica carinata HOM05D006043 ORTHO05D007309 1.3e-36 156.8 143 59.4
Eucgr.K02384 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.7e-36 156.4 154 55.2
CARHR084520 Cardamine hirsuta HOM05D006043 ORTHO05D007309 2.9e-36 155.6 143 58.7
Eucgr.K02399 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.9e-36 155.6 154 54.5
Eucgr.K02410 Eucalyptus grandis HOM05D006043 ORTHO05D007309 3.8e-36 155.2 154 54.5
AL3G21330 Arabidopsis lyrata HOM05D006043 ORTHO05D007309 5.0e-36 154.8 143 58.0
Eucgr.K02389 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.5e-35 152.5 154 53.9
BraA03t12747Z Brassica rapa HOM05D006043 ORTHO05D007309 4.3e-35 151.8 144 57.6
PGSC0003DMG400002723 Solanum tuberosum HOM05D006043 ORTHO05D007309 4.3e-35 151.8 145 54.5
C03p43400 Brassica napus HOM05D006043 ORTHO05D007309 5.6e-35 151.4 144 56.9
Peaxi162Scf00412g00073 Petunia axillaris HOM05D006043 ORTHO05D007309 5.6e-35 151.4 150 56.7
Carub.0003s0912 Capsella rubella HOM05D006043 ORTHO05D007309 7.3e-35 151.0 144 56.2
AT3G10020 Arabidopsis thaliana HOM05D006043 ORTHO05D007309 9.5e-35 150.6 143 55.9
Dinv21268 Davidia involucrata HOM05D006043 ORTHO05D007309 9.5e-35 150.6 143 56.6
Aqoxy1G00961 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 1.6e-34 149.8 151 56.3
BcaC01g04256 Brassica carinata HOM05D006043 ORTHO05D007309 1.6e-34 149.8 144 56.9
Solyc09g008980.2 Solanum lycopersicum HOM05D006043 ORTHO05D007309 2.8e-34 149.1 151 55.6
A03p35730 Brassica napus HOM05D006043 ORTHO05D007309 4.7e-34 148.3 140 57.9
Cc00_g05260 Coffea canephora HOM05D006043 ORTHO05D007309 1.8e-33 146.4 149 57.7
Aa31LG3G2550 Aethionema arabicum HOM05D006043 ORTHO05D007309 2.3e-33 146.0 142 55.6
A05p39030 Brassica napus HOM05D006043 ORTHO05D007309 3.0e-33 145.6 147 55.8
BraA05t22694Z Brassica rapa HOM05D006043 ORTHO05D007309 4.0e-33 145.2 146 54.8
Lsat_1_v5_gn_2_22321 Lactuca sativa HOM05D006043 ORTHO05D007309 6.8e-33 144.4 143 58.0
C05p58050 Brassica napus HOM05D002004 ORTHO05D002089 1.2e-32 143.7 146 54.8
BolC5t34462H Brassica oleracea HOM05D006043 ORTHO05D007309 1.2e-32 143.7 146 54.8
BcaC05g29726 Brassica carinata HOM05D006043 ORTHO05D007309 2.6e-32 142.5 150 53.3
Thhalv10021699m.g Eutrema salsugineum HOM05D006043 ORTHO05D007309 5.8e-32 141.4 145 53.1
Thecc.05G079900 Theobroma cacao HOM05D006043 ORTHO05D007309 5.8e-32 141.4 157 53.5
SGA_v2.0_scaffold40G15419 Striga asiatica HOM05D006043 ORTHO05D007309 7.5e-32 141.0 149 53.7
Cc06_g05110 Coffea canephora HOM05D006043 ORTHO05D007309 3.7e-31 138.7 158 51.3
Oeu030483.1 Olea europaea HOM05D006043 ORTHO05D007309 6.4e-31 137.9 154 52.6
PSO384G2483 Papaver somniferum HOM05D006043 ORTHO05D007309 6.4e-31 137.9 157 54.1
BolC3t16611H Brassica oleracea HOM05D006043 ORTHO05D007309 8.3e-31 137.5 146 54.1
DCAR_009167 Daucus carota HOM05D006043 ORTHO05D007309 1.9e-30 136.3 138 53.6
BolC8t51238H Brassica oleracea HOM05D006043 ORTHO05D007309 5.4e-30 134.8 135 56.3
Nn6g35076 Nelumbo nucifera HOM05D006043 ORTHO05D007309 5.4e-30 134.8 138 53.6
Nitab4.5_0001922g0090 Nicotiana tabacum HOM05D006043 ORTHO05D007309 5.4e-30 134.8 155 54.8
Nn2g13971 Nelumbo nucifera HOM05D006043 ORTHO05D007309 3.5e-29 132.1 104 63.5
Zm00001eb406490 Zea mays HOM05D006043 ORTHO05D007309 4.6e-29 131.7 138 53.6
ECA126G0006 Erigeron canadensis HOM05D006043 ORTHO05D007309 6.0e-29 131.3 145 49.0
Lj2P127T74 Lonicera japonica HOM05D006043 ORTHO05D007309 1.3e-28 130.2 132 55.3
PGSC0003DMG400002724 Solanum tuberosum HOM05D006043 ORTHO05D007309 1.7e-28 129.8 151 49.0
THA.LOC104816380 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 6.6e-28 127.9 133 51.1
TWI13G0012 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 6.6e-28 127.9 155 49.0
TWI74G0769 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 6.6e-28 127.9 155 49.0
Aqoxy2G01470 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 2.5e-27 125.9 126 52.4
Nitab4.5_0010125g0040 Nicotiana tabacum HOM05D006043 ORTHO05D007309 3.3e-27 125.6 125 55.2
PGR004G1627 Punica granatum HOM05D006043 ORTHO05D007309 5.6e-27 124.8 137 54.0
HPP92_021571 Vanilla planifolia HOM05D006043 ORTHO05D007309 1.6e-26 123.2 134 50.7
Os12g0147200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 2.1e-26 122.9 131 55.0
Os11g0149200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 3.6e-26 122.1 139 49.6
SalBow3G1044 Salvia bowleyana HOM05D006043 ORTHO05D007309 3.6e-26 122.1 142 47.2
CAN.G824.34 Capsicum annuum HOM05D006043 ORTHO05D007309 1.4e-25 120.2 120 51.7
Lj4P368T6 Lonicera japonica HOM05D006043 ORTHO05D007309 6.4e-23 111.3 87 65.5
Sopen09g003730 Solanum pennellii HOM05D006043 ORTHO05D007309 5.4e-22 108.2 151 44.4
Solyc09g008970.1 Solanum lycopersicum HOM05D006043 ORTHO05D007309 9.2e-22 107.5 131 47.3
C08p36560 Brassica napus HOM05D006043 ORTHO05D007309 1.0e-20 104.0 101 58.4
AUR62033593 Chenopodium quinoa HOM05D006043 ORTHO05D007309 1.3e-20 103.6 134 45.5
BcaC03g16179 Brassica carinata HOM05D006043 ORTHO05D007309 5.1e-20 101.7 101 57.4
C02p39530 Brassica napus HOM05D006043 ORTHO05D007309 1.5e-19 100.1 101 56.4
BolC2t09966H Brassica oleracea HOM05D006043 ORTHO05D007309 1.5e-19 100.1 101 56.4
Prupe.7G091800 Prunus persica HOM05D006043 ORTHO05D007309 8.1e-18 94.4 87 60.9
TAR334G0001 Trochodendron aralioides HOM05D006043 ORTHO05D007309 1.8e-17 93.2 84 60.7
TAR369G1076 Trochodendron aralioides HOM05D006043 ORTHO05D007309 1.8e-17 93.2 84 60.7
AUR62037886 Chenopodium quinoa HOM05D006043 ORTHO05D007309 6.4e-15 84.7 145 37.9
THA.LOC104823222 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 7.1e-14 81.3 70 50.0
SEGI_20897 Sequoiadendron giganteum HOM05D006043 ORTHO05D007309 9.2e-14 80.9 101 47.5
SMO347G0034 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 2.4e-09 66.2 89 42.7
Nn1g08859 Nelumbo nucifera HOM05D006043 ORTHO05D007309 3.1e-09 65.9 72 54.2
SMO358G0245 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 1.5e-08 63.5 84 50.0
Mapoly0058s0037 Marchantia polymorpha HOM05D006043 ORTHO05D007309 1.7e-07 60.1 111 37.8


User provided reference genes

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