Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0027832 Lotus japonicus HOM05D005710 ORTHO05D004657 5.8e-224 780.8 406 100.0
Glyma.18G264900 Glycine max HOM05D005710 ORTHO05D004657 1.3e-119 434.1 422 64.5
Glyma.08G242700 Glycine max HOM05D005710 ORTHO05D004657 1.4e-116 424.1 419 63.2
Lalb_Chr17g0337061 Lupinus albus HOM05D005710 ORTHO05D004657 2.7e-112 409.8 411 62.5
Medtr7g012940 Medicago truncatula HOM05D005710 ORTHO05D004657 8.4e-106 388.3 421 60.8
VMungo1383G0251 Vigna mungo HOM05D005710 ORTHO05D004657 2.1e-104 383.6 405 60.0
Phvul.008G035100 Phaseolus vulgaris HOM05D005710 ORTHO05D004657 6.0e-104 382.1 416 58.9
TPR.G33463 Trifolium pratense HOM05D005710 ORTHO05D004657 1.1e-97 361.3 425 57.4
Psat3g200880 Pisum sativum HOM05D005710 ORTHO05D004657 4.6e-96 355.9 428 57.2
arahy.Tifrunner.gnm1.ann1.B1JWTK Arachis hypogaea HOM05D005710 ORTHO05D004657 1.9e-94 350.5 420 54.5
arahy.Tifrunner.gnm1.ann1.EE1ZRN Arachis hypogaea HOM05D005710 ORTHO05D004657 1.9e-94 350.5 420 55.7
Ca_06819_v3 Cicer arietinum L. HOM05D005710 ORTHO05D004657 1.4e-63 248.1 268 59.7
Cfa007637 Carpinus fangiana HOM05D005710 ORTHO05D004657 5.1e-63 246.1 447 41.8
Prupe.3G257800 Prunus persica HOM05D005710 ORTHO05D004657 1.7e-61 241.1 438 42.9
MD09G1062500 Malus domestica HOM05D005710 ORTHO05D004657 4.8e-61 239.6 442 43.2
vmacro18155 Vaccinium macrocarpon HOM05D005710 ORTHO05D004657 4.2e-57 226.5 383 42.6
Thecc.04G091900 Theobroma cacao HOM05D005710 ORTHO05D004657 5.5e-57 226.1 436 41.7
Duzib147G0411 Durio zibethinus HOM05D005710 ORTHO05D004657 4.7e-56 223.0 434 40.3
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 7.9e-56 222.2 407 42.0
Potri.017G091100 Populus trichocarpa HOM05D005710 ORTHO05D004657 1.4e-55 221.5 422 41.7
COL.COLO4_03731 Corchorus olitorius HOM05D005710 ORTHO05D004657 1.5e-54 218.0 449 41.2
Sabra17G0080200 Salix brachista HOM05D005710 ORTHO05D004657 1.5e-54 218.0 456 38.4
CSS0045690 Camellia sinensis var. sinensis HOM05D005710 ORTHO05D004657 2.0e-54 217.6 419 39.9
QL02p039943 Quercus lobata HOM05D005710 ORTHO05D004657 2.6e-54 217.2 351 47.0
MD00G1156300 Malus domestica HOM05D005710 ORTHO05D004657 4.4e-54 216.5 351 45.6
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 7.4e-54 215.7 380 41.6
RcHm_v2.0_Chr2g0166341 Rosa chinensis HOM05D005710 ORTHO05D004657 3.7e-53 213.4 426 41.5
Atru.chr8.406 Acer truncatum HOM05D005710 ORTHO05D004657 4.8e-53 213.0 427 41.0
CANSAT64G1937 Cannabis sativa HOM05D005710 ORTHO05D004657 8.2e-53 212.2 434 39.6
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 2.4e-52 210.7 445 41.3
CiPaw.04G057600 Carya illinoinensis HOM05D005710 ORTHO05D004657 3.1e-52 210.3 433 40.6
Ciclev10011685m.g Citrus clementina HOM05D005710 ORTHO05D004657 7.0e-52 209.1 433 37.6
Gohir.D09G010000 Gossypium hirsutum HOM05D005710 ORTHO05D004657 1.3e-50 204.9 418 37.8
FvH4_6g47270 Fragaria vesca HOM05D005710 ORTHO05D004657 2.9e-50 203.8 445 40.0
Manes.01G098200 Manihot esculenta HOM05D005710 ORTHO05D004657 3.8e-50 203.4 436 38.8
FAN14G2617 Fragaria x ananassa HOM05D005710 ORTHO05D004657 5.0e-50 203.0 445 39.3
TWI60G1009 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 8.5e-50 202.2 423 38.8
Duzib187G0917 Durio zibethinus HOM05D005710 ORTHO05D004657 3.6e-48 196.8 436 38.8
TWI32G0095 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 1.4e-47 194.9 437 38.4
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 1.8e-47 194.5 430 38.1
Gohir.A09G010900 Gossypium hirsutum HOM05D005710 ORTHO05D004657 2.3e-47 194.1 418 37.3
DCAR_011051 Daucus carota HOM05D005710 ORTHO05D004657 2.0e-46 191.0 408 37.7
Actinidia01981 Actinidia chinensis HOM05D005710 ORTHO05D004657 1.7e-45 188.0 403 40.0
Sed0007565 Sechium edule HOM05D005710 ORTHO05D004657 2.8e-45 187.2 427 38.6
Oeu025712.1 Olea europaea HOM05D005710 ORTHO05D004657 3.7e-45 186.8 395 42.0
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 1.8e-44 184.5 425 38.4
Gorai.006G011600 Gossypium raimondii HOM05D005710 ORTHO05D004657 4.1e-44 183.3 326 42.0
Haze_14462 Corylus avellana HOM05D005710 ORTHO05D004657 3.5e-43 180.3 445 37.5
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 1.1e-41 175.3 312 42.6
Lsat_1_v5_gn_3_98801 Lactuca sativa HOM05D005710 ORTHO05D004657 4.2e-41 173.3 376 37.8
FAN09G1437 Fragaria x ananassa HOM05D005710 ORTHO05D004657 2.7e-40 170.6 553 33.1
TWI34G1348 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 1.0e-39 168.7 371 40.2
Manes.02G052100 Manihot esculenta HOM05D005710 ORTHO05D004657 1.4e-39 168.3 434 36.9
Eucgr.I01977 Eucalyptus grandis HOM05D005710 ORTHO05D004657 2.3e-39 167.5 449 37.0
CAN.G206.210 Capsicum annuum HOM05D005710 ORTHO05D004657 4.0e-39 166.8 367 38.1
PGR004G2722 Punica granatum HOM05D005710 ORTHO05D004657 5.2e-39 166.4 373 41.6
FAN05G5426 Fragaria x ananassa HOM05D005710 ORTHO05D004657 6.7e-39 166.0 406 37.2
Dinv34961 Davidia involucrata HOM05D005710 ORTHO05D004657 3.3e-38 163.7 388 36.1
SalBow7G3425 Salvia bowleyana HOM05D005710 ORTHO05D004657 2.8e-37 160.6 385 38.2
Haze_14452 Corylus avellana HOM05D005710 ORTHO05D004657 3.1e-36 157.1 341 38.4
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 2.0e-35 154.5 379 38.0
Nitab4.5_0008213g0040 Nicotiana tabacum HOM05D005710 ORTHO05D004657 2.0e-35 154.5 416 34.4
Ah.10g032010 Amaranthus hybridus HOM05D005710 ORTHO05D004657 2.7e-35 154.1 434 34.6
PSO478G1813 Papaver somniferum HOM05D005710 ORTHO05D004657 3.5e-35 153.7 410 34.1
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 3.5e-35 153.7 424 36.3
ECA246G0940 Erigeron canadensis HOM05D005710 ORTHO05D004657 7.7e-35 152.5 364 35.4
TAR629G0087 Trochodendron aralioides HOM05D005710 ORTHO05D004657 1.0e-34 152.1 385 37.1
Nitab4.5_0000565g0150 Nicotiana tabacum HOM05D005710 ORTHO05D004657 6.5e-34 149.4 378 36.0
Migut.K01286 Erythranthe guttata HOM05D005710 ORTHO05D004657 1.1e-33 148.7 377 36.3
HanXRQChr15g0473071 Helianthus annuus HOM05D005710 ORTHO05D004657 1.1e-33 148.7 289 40.1
Sp2g17910 Schrenkiella parvula HOM05D005710 ORTHO05D004657 7.2e-33 146.0 488 30.1
A06p39970 Brassica napus HOM05D005710 ORTHO05D004657 9.4e-33 145.6 426 34.5
BraA06t26912Z Brassica rapa HOM05D005710 ORTHO05D004657 9.4e-33 145.6 426 34.5
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 2.1e-32 144.4 369 36.3
EL10Ac2g03101 Beta vulgaris HOM05D005710 ORTHO05D004657 1.8e-31 141.4 357 34.5
Thhalv10003979m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 1.8e-31 141.4 435 31.3
PSO017G2516 Papaver somniferum HOM05D005710 ORTHO05D004657 2.3e-31 141.0 384 34.1
THA.LOC104823892 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 5.2e-31 139.8 349 36.4
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 2.6e-30 137.5 369 33.9
SGA_v2.0_scaffold52G19180 Striga asiatica HOM05D005710 ORTHO05D004657 2.6e-30 137.5 303 36.6
BcaB07g30084 Brassica carinata HOM05D005710 ORTHO05D004657 3.4e-30 137.1 409 34.7
Hund15554 Selenicereus undatus HOM05D005710 ORTHO05D004657 3.4e-30 137.1 308 37.0
Hma1.2p1_1813F.1_g303710 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 5.7e-30 136.3 316 36.4
SGA_v2.0_scaffold4G02406 Striga asiatica HOM05D005710 ORTHO05D004657 1.7e-29 134.8 394 32.7
THA.LOC104805502 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 1.7e-29 134.8 336 36.0
AUR62018163 Chenopodium quinoa HOM05D005710 ORTHO05D004657 4.1e-28 130.2 424 30.7
BraA02t08649Z Brassica rapa HOM05D005710 ORTHO05D004657 7.0e-28 129.4 472 30.1
BcaC08g44413 Brassica carinata HOM05D005710 ORTHO05D004657 9.1e-28 129.0 415 32.8
C06p18500 Brassica napus HOM05D005710 ORTHO05D004657 9.1e-28 129.0 415 32.8
CARHR154030 Cardamine hirsuta HOM05D005710 ORTHO05D004657 2.7e-27 127.5 258 40.7
Peaxi162Scf00166g00643 Petunia axillaris HOM05D005710 ORTHO05D004657 2.7e-27 127.5 377 34.2
Thhalv10027716m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 3.5e-27 127.1 463 31.3
A02p36530 Brassica napus HOM05D005710 ORTHO05D004657 5.9e-27 126.3 475 29.5
Aa31LG2G3970 Aethionema arabicum HOM05D005710 ORTHO05D004657 1.0e-26 125.6 293 36.2
AUR62042434 Chenopodium quinoa HOM05D005710 ORTHO05D004657 1.0e-26 125.6 228 38.6
BcaC03g17571 Brassica carinata HOM05D005710 ORTHO05D004657 2.3e-26 124.4 464 30.4
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 2.9e-26 124.0 221 38.0
AL5G19350 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 5.0e-26 123.2 339 36.3
C02p55500 Brassica napus HOM05D005710 ORTHO05D004657 5.0e-26 123.2 405 31.1
BolC2t11608H Brassica oleracea HOM05D005710 ORTHO05D004657 5.0e-26 123.2 405 31.1
Carub.0005s0802 Capsella rubella HOM05D005710 ORTHO05D004657 3.3e-25 120.6 366 33.6
AT3G29310 Arabidopsis thaliana HOM05D005710 ORTHO05D004657 1.6e-24 118.2 509 30.8
Solyc02g088660.4 Solanum lycopersicum HOM05D005710 ORTHO05D004657 4.0e-23 113.6 203 42.4
Aa31LG9G16660 Aethionema arabicum HOM05D005710 ORTHO05D004657 2.0e-22 111.3 404 30.0
BolC6t37063H Brassica oleracea HOM05D005710 ORTHO05D004657 9.8e-22 109.0 420 30.7
C07p38200 Brassica napus HOM05D005710 ORTHO05D004657 3.1e-20 104.0 256 38.7
BcaB02g07987 Brassica carinata HOM05D005710 ORTHO05D004657 2.0e-19 101.3 444 29.5
MBI16_g30408_MAGBIO Magnolia biondii HOM05D001913 ORTHO05D001880 2.7e-19 100.9 300 33.7
Lj1g0011465 Lotus japonicus HOM05D005220 ORTHO05D006082 1.7e-18 98.2 81 71.6
CDE07G0246 Ceratophyllum demersum HOM05D001913 ORTHO05D001880 2.5e-17 94.4 197 36.0
Os05g0512400 Oryza sativa ssp. japonica HOM05D005710 ORTHO05D004657 4.7e-16 90.1 102 51.0
Migut.K01288 Erythranthe guttata HOM05D005710 ORTHO05D004657 3.0e-15 87.4 268 31.7
SalBow2G0426 Salvia bowleyana HOM05D005710 ORTHO05D004657 2.6e-14 84.3 131 45.8
HPP92_019480 Vanilla planifolia HOM05D005710 ORTHO05D004657 2.6e-14 84.3 228 33.3
Nn4g23370 Nelumbo nucifera HOM05D005710 ORTHO05D004657 7.5e-14 82.8 279 28.7
Zm00001eb352990 Zea mays HOM05D005710 ORTHO05D004657 7.5e-14 82.8 172 36.6
PGSC0003DMG400001447 Solanum tuberosum HOM05D005710 ORTHO05D004657 1.0e-10 72.4 162 35.8
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 2.3e-10 71.2 101 41.6
FAN02G2871 Fragaria x ananassa HOM05D005710 ORTHO05D004657 3.9e-10 70.5 143 39.2
Sopen02g033380 Solanum pennellii HOM05D005710 ORTHO05D004657 3.9e-10 70.5 161 34.2
SalBow3G1747 Salvia bowleyana HOM05D005710 ORTHO05D004657 5.0e-10 70.1 158 38.6
Oeu033388.1 Olea europaea HOM05D005710 ORTHO05D004657 1.6e-08 65.1 179 33.5
GSVIVG01011503001 Vitis vinifera HOM05D005710 ORTHO05D004657 8.0e-08 62.8 63 50.8
BcaC06g33686 Brassica carinata HOM05D005710 ORTHO05D004657 4.0e-07 60.5 260 31.2
CAN.G206.216 Capsicum annuum HOM05D005710 ORTHO05D004657 5.2e-07 60.1 195 29.7
Lj4P116T76 Lonicera japonica HOM05D005710 ORTHO05D004657 2.0e-06 58.2 171 29.8


User provided reference genes

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