Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0027781 Lotus japonicus HOM05D007368 ORTHO05D009330 2.9e-58 228.8 154 100.0
Medtr7g100570 Medicago truncatula HOM05D007368 ORTHO05D009330 2.7e-40 169.1 151 59.6
Psat3g046880 Pisum sativum HOM05D007368 ORTHO05D009330 2.3e-39 166.0 151 59.6
Haze_20668 Corylus avellana HOM05D007368 ORTHO05D009330 1.1e-38 163.7 88 85.2
Medtr7g061255 Medicago truncatula HOM05D007368 ORTHO05D009330 2.5e-38 162.5 89 85.4
Cfa017494 Carpinus fangiana HOM05D007368 ORTHO05D009330 5.6e-38 161.4 88 84.1
ClCG10G020660 Citrullus lanatus HOM05D007368 ORTHO05D009330 1.2e-37 160.2 90 82.2
Lalb_Chr01g0019071 Lupinus albus HOM05D007368 ORTHO05D009330 2.8e-37 159.1 87 86.2
CARHR163370 Cardamine hirsuta HOM05D007368 ORTHO05D009330 4.7e-37 158.3 91 81.3
Atru.chr8.2541 Acer truncatum HOM05D007368 ORTHO05D009330 6.2e-37 157.9 87 82.8
CsaV3_3G035440 Cucumis sativus L. HOM05D007368 ORTHO05D009330 8.1e-37 157.5 90 80.0
MELO3C009303.2 Cucumis melo HOM05D007368 ORTHO05D009330 1.1e-36 157.1 90 80.0
Manes.08G002100 Manihot esculenta HOM05D007368 ORTHO05D009330 1.1e-36 157.1 88 83.0
Aa31LG10G9720 Aethionema arabicum HOM05D007368 ORTHO05D009330 3.1e-36 155.6 88 83.0
Thhalv10010814m.g Eutrema salsugineum HOM05D007368 ORTHO05D009330 5.2e-36 154.8 88 83.0
SGA_v2.0_scaffold35G14174 Striga asiatica HOM05D007368 ORTHO05D009330 5.2e-36 154.8 88 80.7
CSS0023324 Camellia sinensis var. sinensis HOM05D007368 ORTHO05D009330 2.0e-35 152.9 88 79.5
QL07p045528 Quercus lobata HOM05D007368 ORTHO05D009330 2.0e-35 152.9 88 80.7
RhsimUnG0119200 Rhododendron simsii HOM05D007368 ORTHO05D009330 2.0e-35 152.9 87 80.5
Glyma.03G177200 Glycine max HOM05D007368 ORTHO05D009330 2.6e-35 152.5 88 85.2
Lsat_1_v5_gn_2_109820 Lactuca sativa HOM05D007368 ORTHO05D009330 3.4e-35 152.1 87 79.3
Ciclev10013048m.g Citrus clementina HOM05D007368 ORTHO05D009330 4.4e-35 151.8 88 80.7
GSVIVG01025542001 Vitis vinifera HOM05D007368 ORTHO05D009330 4.4e-35 151.8 88 80.7
AL5G34390 Arabidopsis lyrata HOM05D007368 ORTHO05D009330 7.6e-35 151.0 88 80.7
Nn2g10623 Nelumbo nucifera HOM05D007368 ORTHO05D009330 7.6e-35 151.0 88 75.0
Migut.L01655 Erythranthe guttata HOM05D007368 ORTHO05D009330 9.9e-35 150.6 88 79.5
TAR623G0445 Trochodendron aralioides HOM05D007368 ORTHO05D009330 9.9e-35 150.6 88 77.3
Glyma.19G177900 Glycine max HOM05D007368 ORTHO05D009330 1.3e-34 150.2 149 57.0
HanXRQChr07g0195701 Helianthus annuus HOM05D007368 ORTHO05D009330 1.3e-34 150.2 88 76.1
MBI05_g24570_MAGBIO Magnolia biondii HOM05D007368 ORTHO05D009330 1.3e-34 150.2 88 76.1
AT3G53470 Arabidopsis thaliana HOM05D007368 ORTHO05D009330 1.7e-34 149.8 88 79.5
BcaC07g39711 Brassica carinata HOM05D007368 ORTHO05D009330 1.7e-34 149.8 88 79.5
A09p46480 Brassica napus HOM05D007368 ORTHO05D009330 1.7e-34 149.8 88 79.5
C08p28830 Brassica napus HOM05D007368 ORTHO05D009330 1.7e-34 149.8 88 79.5
Eucgr.A01185 Eucalyptus grandis HOM05D007368 ORTHO05D009330 1.7e-34 149.8 88 80.7
SalBow4G2292 Salvia bowleyana HOM05D007368 ORTHO05D009330 1.7e-34 149.8 87 81.6
THA.LOC104806520 Tarenaya hassleriana HOM05D007368 ORTHO05D009330 1.7e-34 149.8 88 78.4
vmacro20068 Vaccinium macrocarpon HOM05D007368 ORTHO05D009330 2.9e-34 149.1 86 79.1
Phvul.001G174100 Phaseolus vulgaris HOM05D007368 ORTHO05D009330 3.7e-34 148.7 88 83.0
PGR004G1717 Punica granatum HOM05D007368 ORTHO05D009330 3.7e-34 148.7 88 77.3
BolC8t50485H Brassica oleracea HOM05D007368 ORTHO05D009330 6.4e-34 147.9 87 79.3
BraA09t40112Z Brassica rapa HOM05D007368 ORTHO05D009330 6.4e-34 147.9 87 79.3
Sp5g08870 Schrenkiella parvula HOM05D007368 ORTHO05D009330 6.4e-34 147.9 88 78.4
Sabra16G0091100 Salix brachista HOM05D007368 ORTHO05D009330 8.4e-34 147.5 87 75.9
Potri.016G084000 Populus trichocarpa HOM05D007368 ORTHO05D009330 1.4e-33 146.7 87 75.9
VMungo1383G1325 Vigna mungo HOM05D007368 ORTHO05D009330 1.4e-33 146.7 88 81.8
Thecc.05G052500 Theobroma cacao HOM05D007368 ORTHO05D009330 1.9e-33 146.4 88 77.3
Cc06_g03400 Coffea canephora HOM05D007368 ORTHO05D009330 2.4e-33 146.0 88 78.4
AUR62002707 Chenopodium quinoa HOM05D007368 ORTHO05D009330 3.2e-33 145.6 87 77.0
Duzib106G0389 Durio zibethinus HOM05D007368 ORTHO05D009330 3.2e-33 145.6 87 75.9
PSO339G6044 Papaver somniferum HOM05D007368 ORTHO05D009330 4.1e-33 145.2 88 72.7
PSO384G2936 Papaver somniferum HOM05D007368 ORTHO05D009330 4.1e-33 145.2 88 72.7
TWI18G0236 Tripterygium wilfordii HOM05D007368 ORTHO05D009330 4.1e-33 145.2 88 72.7
EL10Ac7g17332 Beta vulgaris HOM05D007368 ORTHO05D009330 5.4e-33 144.8 88 76.1
A07p02830 Brassica napus HOM05D007368 ORTHO05D009330 5.4e-33 144.8 87 77.0
BraA07t28082Z Brassica rapa HOM05D007368 ORTHO05D009330 5.4e-33 144.8 87 77.0
Aqoxy4G03165 Aquilegia oxysepala HOM05D007368 ORTHO05D009330 9.2e-33 144.1 88 72.7
Carub.0005s2004 Capsella rubella HOM05D007368 ORTHO05D009330 9.2e-33 144.1 88 73.9
Gohir.A04G077000 Gossypium hirsutum HOM05D007368 ORTHO05D009330 1.2e-32 143.7 88 76.1
Gohir.D04G116100 Gossypium hirsutum HOM05D007368 ORTHO05D009330 1.2e-32 143.7 88 76.1
Gorai.009G420700 Gossypium raimondii HOM05D007368 ORTHO05D009330 1.2e-32 143.7 88 76.1
CANSAT80G2753 Cannabis sativa HOM05D007368 ORTHO05D009330 2.7e-32 142.5 89 75.3
Nitab4.5_0006316g0030 Nicotiana tabacum HOM05D007368 ORTHO05D009330 2.7e-32 142.5 86 75.6
Os03g0285100 Oryza sativa ssp. japonica HOM05D007368 ORTHO05D009330 2.7e-32 142.5 87 74.7
BcaB01g00269 Brassica carinata HOM05D007368 ORTHO05D009330 3.5e-32 142.1 87 75.9
Cpa.g.sc114.58 Carica papaya HOM05D007368 ORTHO05D009330 4.6e-32 141.7 73 86.3
Sc20g0004140 Simmondsia chinensis HOM05D007368 ORTHO05D009330 4.6e-32 141.7 89 78.7
Prupe.6G242800 Prunus persica HOM05D007368 ORTHO05D009330 7.8e-32 141.0 93 71.0
Nitab4.5_0000848g0200 Nicotiana tabacum HOM05D007368 ORTHO05D009330 1.0e-31 140.6 86 74.4
Peaxi162Scf00005g05110 Petunia axillaris HOM05D007368 ORTHO05D009330 1.3e-31 140.2 85 75.3
FvH4_6g15150 Fragaria vesca HOM05D007368 ORTHO05D009330 1.7e-31 139.8 89 74.2
FAN02G4571 Fragaria x ananassa HOM05D007368 ORTHO05D009330 1.7e-31 139.8 89 74.2
FAN05G3151 Fragaria x ananassa HOM05D007368 ORTHO05D009330 1.7e-31 139.8 89 74.2
FAN09G3524 Fragaria x ananassa HOM05D007368 ORTHO05D009330 1.7e-31 139.8 89 74.2
FAN14G0355 Fragaria x ananassa HOM05D007368 ORTHO05D009330 1.7e-31 139.8 89 74.2
arahy.Tifrunner.gnm1.ann1.FER711 Arachis hypogaea HOM05D007368 ORTHO05D009330 2.3e-31 139.4 74 82.4
CDE07G1273 Ceratophyllum demersum HOM05D007368 ORTHO05D009330 3.0e-31 139.0 88 69.3
Zm00001eb039440 Zea mays HOM05D007368 ORTHO05D009330 5.1e-31 138.3 89 71.9
Zm00001eb039470 Zea mays HOM05D007368 ORTHO05D009330 5.1e-31 138.3 89 71.9
CSS0022034 Camellia sinensis var. sinensis HOM05D007368 ORTHO05D009330 6.6e-31 137.9 86 75.6
Zm00001eb013060 Zea mays HOM05D007368 ORTHO05D009330 8.6e-31 137.5 85 72.9
RcHm_v2.0_Chr3g0468451 Rosa chinensis HOM05D007368 ORTHO05D009330 1.5e-30 136.7 89 71.9
arahy.Tifrunner.gnm1.ann1.XWNT9U Arachis hypogaea HOM05D007368 ORTHO05D009330 3.3e-30 135.6 71 84.5
Zm00001eb039540 Zea mays HOM05D007368 ORTHO05D009330 3.3e-30 135.6 89 70.8
BcaC03g13096 Brassica carinata HOM05D007368 ORTHO05D009330 5.6e-30 134.8 89 74.2
BolC2t05999H Brassica oleracea HOM05D007368 ORTHO05D009330 1.2e-29 133.7 83 75.9
MD12G1126200 Malus domestica HOM05D007368 ORTHO05D009330 1.6e-29 133.3 93 71.0
HPP92_003604 Vanilla planifolia HOM05D007368 ORTHO05D009330 2.0e-27 126.3 88 62.5
Dinv37241 Davidia involucrata HOM05D007368 ORTHO05D009330 3.8e-26 122.1 65 81.5
AUR62030166 Chenopodium quinoa HOM05D007368 ORTHO05D009330 1.4e-25 120.2 65 81.5
Actinidia11231 Actinidia chinensis HOM05D007368 ORTHO05D009330 3.5e-24 115.5 63 81.0
Sopen09g002110 Solanum pennellii HOM05D007368 ORTHO05D009330 3.5e-24 115.5 80 67.5
Solyc09g007240.3 Solanum lycopersicum HOM05D007368 ORTHO05D009330 1.3e-23 113.6 79 67.1
Sed0014476 Sechium edule HOM05D007368 ORTHO05D009330 6.6e-23 111.3 90 61.1
SEGI_06625 Sequoiadendron giganteum HOM05D007368 ORTHO05D009330 7.3e-22 107.8 85 57.6
CSS0036054 Camellia sinensis var. sinensis HOM05D007368 ORTHO05D009330 1.3e-21 107.1 86 62.8
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 1.3e-15 87.0 46 80.4
Pp3c5_6130 Physcomitrium patens HOM05D007368 ORTHO05D009330 5.3e-12 75.1 94 39.4
Mapoly0019s0018 Marchantia polymorpha HOM05D007368 ORTHO05D009330 2.6e-11 72.8 82 41.5
TAR369G0858 Trochodendron aralioides HOM05D000391 ORTHO05D011523 4.5e-11 72.0 46 65.2
SMO180G0004 Selaginella moellendorffii HOM05D007368 ORTHO05D009330 1.7e-10 70.1 82 39.0


User provided reference genes

Program Settings