Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 2.3e-102 375.6 189 100.0
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 3.5e-66 255.4 191 74.9
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 7.0e-59 231.1 200 67.5
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.7e-57 226.5 203 67.0
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 2.3e-57 226.1 204 66.2
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 6.6e-57 224.6 207 65.7
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 3.3e-56 222.2 196 66.3
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 6.2e-55 218.0 210 62.9
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 5.2e-54 214.9 200 64.5
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 1.2e-53 213.8 190 66.3
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 2.9e-52 209.1 202 62.4
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 3.5e-50 202.2 195 61.0
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 3.5e-50 202.2 193 62.2
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 5.1e-49 198.4 203 54.7
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 6.6e-49 198.0 189 61.4
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 9.5e-48 194.1 189 59.8
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 2.1e-47 193.0 159 69.2
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 8.1e-47 191.0 204 55.4
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 1.4e-46 190.3 194 58.2
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 1.2e-45 187.2 193 57.5
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.1e-43 180.6 202 52.5
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 1.9e-43 179.9 203 53.7
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 2.4e-43 179.5 204 54.9
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 9.2e-43 177.6 201 54.2
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.2e-42 177.2 197 53.3
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 3.5e-42 175.6 204 52.0
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 6.0e-42 174.9 182 57.7
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 6.0e-42 174.9 203 53.7
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 7.8e-42 174.5 202 54.5
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 7.8e-42 174.5 201 52.7
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 7.8e-42 174.5 202 54.5
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 1.3e-41 173.7 204 51.5
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 1.1e-40 170.6 206 51.0
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 2.5e-40 169.5 212 47.6
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.3e-40 169.1 199 55.3
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 4.3e-40 168.7 192 51.6
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.2e-39 167.2 211 52.6
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.6e-39 166.8 211 51.7
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.1e-39 166.4 199 51.3
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 2.8e-39 166.0 201 51.7
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 4.7e-39 165.2 194 52.1
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 6.2e-39 164.9 200 51.0
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 1.8e-38 163.3 206 51.5
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.8e-38 163.3 199 54.3
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.8e-38 163.3 199 54.3
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.8e-38 163.3 199 52.3
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 2.4e-38 162.9 204 50.0
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.4e-38 162.9 211 50.7
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 6.9e-38 161.4 174 54.0
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 6.9e-38 161.4 210 50.0
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.9e-38 161.4 210 50.0
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.9e-38 161.4 210 50.0
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 6.9e-38 161.4 197 50.3
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 6.9e-38 161.4 208 48.6
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 6.9e-38 161.4 187 51.3
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 6.9e-38 161.4 196 49.5
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.2e-37 160.6 199 51.8
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.5e-37 160.2 199 50.8
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.7e-36 156.8 191 50.3
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 3.8e-36 155.6 195 50.8
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 6.4e-36 154.8 223 44.4
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.1e-35 154.1 193 51.3
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.1e-35 154.1 199 49.7
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.4e-35 153.7 199 49.7
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.9e-35 153.3 192 51.0
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.4e-35 152.9 192 49.0
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 2.4e-35 152.9 187 49.7
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 2.1e-34 149.8 234 43.2
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 2.7e-34 149.4 186 50.5
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 3.5e-34 149.1 185 50.3
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 7.8e-34 147.9 201 44.3
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.0e-33 147.5 198 47.5
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 1.3e-33 147.1 190 46.3
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 1.3e-33 147.1 198 48.5
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 3.9e-33 145.6 200 46.0
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 3.9e-33 145.6 198 49.0
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 5.1e-33 145.2 195 51.3
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 1.5e-32 143.7 206 44.7
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.5e-32 143.7 189 47.1
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.9e-32 143.3 207 47.3
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 1.9e-32 143.3 179 48.6
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.9e-32 143.3 206 46.1
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 2.5e-32 142.9 175 49.7
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 4.3e-32 142.1 184 48.9
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 7.3e-32 141.4 184 48.9
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 2.1e-31 139.8 195 44.6
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 2.1e-31 139.8 191 47.1
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 3.6e-31 139.0 179 46.4
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 4.8e-31 138.7 172 49.4
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 4.8e-31 138.7 189 45.5
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 8.1e-31 137.9 189 45.5
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 8.1e-31 137.9 181 47.0
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 1.1e-30 137.5 193 46.1
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 1.1e-30 137.5 199 47.7
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 1.4e-30 137.1 186 48.4
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 3.1e-30 136.0 169 46.2
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.0e-30 135.6 189 49.2
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.0e-30 135.6 189 49.2
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 5.3e-30 135.2 172 47.1
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 5.3e-30 135.2 190 45.3
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 5.3e-30 135.2 181 46.4
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.2e-29 134.0 175 48.6
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.5e-29 133.7 181 49.7
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 1.5e-29 133.7 183 49.7
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.5e-29 133.7 188 43.6
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 2.0e-29 133.3 203 43.3
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 2.6e-29 132.9 181 47.0
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.6e-29 132.9 180 44.4
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 4.5e-29 132.1 214 41.6
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 9.9e-29 131.0 181 48.1
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 9.9e-29 131.0 195 42.6
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 9.9e-29 131.0 211 41.2
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.7e-28 130.2 178 47.2
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 2.2e-28 129.8 197 43.1
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.2e-28 129.8 179 48.0
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.8e-28 129.0 192 46.4
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 3.8e-28 129.0 206 41.3
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 3.8e-28 129.0 212 42.5
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 3.8e-28 129.0 197 43.7
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.8e-28 129.0 207 43.5
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 4.9e-28 128.6 194 44.3
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 6.4e-28 128.3 174 48.3
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 8.4e-28 127.9 211 43.6
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 1.1e-27 127.5 168 47.6
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.4e-27 127.1 187 44.9
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 2.4e-27 126.3 115 57.4
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 2.4e-27 126.3 172 43.6
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 4.2e-27 125.6 190 43.7
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 5.4e-27 125.2 177 47.5
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 5.4e-27 125.2 181 45.3
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 7.1e-27 124.8 191 41.9
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 7.1e-27 124.8 201 41.3
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 1.2e-26 124.0 201 42.8
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.7e-26 122.9 214 41.6
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 4.6e-26 122.1 180 49.4
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 1.0e-25 120.9 228 39.9
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 1.3e-25 120.6 212 38.7
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 6.7e-25 118.2 212 37.7
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 8.7e-25 117.9 201 40.8
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 1.9e-24 116.7 187 42.2
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 2.5e-24 116.3 180 42.8
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 5.6e-24 115.2 192 43.8
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 1.3e-23 114.0 188 37.8
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 1.6e-23 113.6 199 41.7
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 3.7e-23 112.5 174 39.7
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 1.1e-22 110.9 144 46.5
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 1.4e-22 110.5 137 49.6
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 3.1e-22 109.4 217 38.2
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 4.0e-22 109.0 171 43.3
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 6.9e-22 108.2 223 36.8
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 6.9e-22 108.2 223 36.8
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 9.0e-22 107.8 224 36.6
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 2.6e-21 106.3 145 44.1
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 2.6e-21 106.3 154 43.5
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.4e-21 105.9 151 43.0
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 5.8e-21 105.1 122 52.5
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.7e-20 103.6 186 42.5
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.2e-20 103.2 170 42.4
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.2e-20 103.2 125 49.6
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 2.9e-20 102.8 129 46.5
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 2.5e-19 99.8 178 41.6
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 9.3e-19 97.8 180 41.1
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.1e-18 96.7 179 41.3
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 7.9e-18 94.7 180 40.6
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 1.8e-17 93.6 180 40.0
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 8.7e-17 91.3 114 50.9
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 1.1e-16 90.9 178 39.9
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 2.5e-16 89.7 178 39.9
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 4.3e-16 89.0 186 38.7
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.3e-15 87.4 276 30.4
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 6.2e-15 85.1 182 36.3
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 8.2e-15 84.7 171 35.1
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.8e-14 83.6 165 33.3
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.2e-13 80.9 179 36.9
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 1.2e-13 80.9 158 37.3
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.2e-13 80.9 107 47.7
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.5e-13 79.0 110 40.0
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 3.8e-12 75.9 135 36.3
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 3.8e-12 75.9 144 37.5
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 7.4e-08 61.6 89 49.4
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.6e-07 60.5 119 33.6
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 4.8e-07 58.9 64 48.4
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 4.1e-06 55.8 200 28.5
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 5.3e-06 55.5 161 32.3
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 6.9e-06 55.1 66 47.0


User provided reference genes

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