Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0027455 Lotus japonicus HOM05D006609 ORTHO05D008551 4.0e-145 518.1 262 100.0
Glyma.17G192700 Glycine max HOM05D006609 ORTHO05D008551 1.2e-120 436.8 263 82.9
VMungo0647G0700 Vigna mungo HOM05D006609 ORTHO05D008551 7.1e-118 427.6 257 82.1
Ca_03364_v3 Cicer arietinum L. HOM05D006609 ORTHO05D008551 1.3e-116 423.3 264 81.1
Psat6g037080 Pisum sativum HOM05D006609 ORTHO05D008551 5.1e-116 421.4 262 80.2
Phvul.001G063300 Phaseolus vulgaris HOM05D006609 ORTHO05D008551 6.7e-116 421.0 262 80.2
Lalb_Chr24g0402671 Lupinus albus HOM05D006609 ORTHO05D008551 4.8e-114 414.8 264 80.3
TPR.G24534 Trifolium pratense HOM05D006609 ORTHO05D008551 6.2e-114 414.5 262 79.0
Medtr1g007120 Medicago truncatula HOM05D006609 ORTHO05D008551 6.0e-109 397.9 262 77.9
arahy.Tifrunner.gnm1.ann1.TZ2NYQ Arachis hypogaea HOM05D006609 ORTHO05D008551 1.3e-108 396.7 262 76.0
arahy.Tifrunner.gnm1.ann1.519I88 Arachis hypogaea HOM05D006609 ORTHO05D008551 3.9e-108 395.2 262 75.6
Manes.16G074700 Manihot esculenta HOM05D006609 ORTHO05D008551 3.7e-90 335.5 251 67.7
GSVIVG01035613001 Vitis vinifera HOM05D006609 ORTHO05D008551 9.1e-89 330.9 246 66.3
CiPaw.07G203500 Carya illinoinensis HOM05D006609 ORTHO05D008551 2.6e-88 329.3 246 67.5
Cfa013375 Carpinus fangiana HOM05D006609 ORTHO05D008551 1.3e-87 327.0 251 66.1
Potri.006G237600 Populus trichocarpa HOM05D006609 ORTHO05D008551 3.8e-87 325.5 241 68.9
Thecc.09G046100 Theobroma cacao HOM05D006609 ORTHO05D008551 1.4e-86 323.6 250 66.4
Duzib168G0257 Durio zibethinus HOM05D006609 ORTHO05D008551 2.1e-85 319.7 252 65.1
Gohir.D05G047900 Gossypium hirsutum HOM05D006609 ORTHO05D008551 4.7e-85 318.5 251 64.1
PGR031G0123 Punica granatum HOM05D006609 ORTHO05D008551 4.7e-85 318.5 252 64.3
TAR626G1286 Trochodendron aralioides HOM05D006609 ORTHO05D008551 6.1e-85 318.2 246 66.3
MD15G1092400 Malus domestica HOM05D006609 ORTHO05D008551 7.9e-85 317.8 251 64.9
Actinidia13339 Actinidia chinensis HOM05D006609 ORTHO05D008551 2.3e-84 316.2 251 62.9
CANSAT25G3446 Cannabis sativa HOM05D006609 ORTHO05D008551 6.7e-84 314.7 249 65.1
TWI63G1544 Tripterygium wilfordii HOM05D006609 ORTHO05D008551 6.7e-84 314.7 249 63.5
CSS0000910 Camellia sinensis var. sinensis HOM05D006609 ORTHO05D008551 2.0e-83 313.2 259 62.9
QL12p041270 Quercus lobata HOM05D006609 ORTHO05D008551 9.7e-83 310.8 230 68.3
MD08G1113000 Malus domestica HOM05D006609 ORTHO05D008551 1.7e-82 310.1 251 63.3
COL.COLO4_20980 Corchorus olitorius HOM05D006609 ORTHO05D008551 2.2e-82 309.7 251 61.8
CDE02G0347 Ceratophyllum demersum HOM05D006609 ORTHO05D008551 9.1e-81 304.3 246 62.6
Aqoxy7G01461 Aquilegia oxysepala HOM05D006609 ORTHO05D008551 3.5e-80 302.4 251 61.0
FvH4_2g35350 Fragaria vesca HOM05D006609 ORTHO05D008551 1.3e-79 300.4 251 62.9
Ciclev10009282m.g Citrus clementina HOM05D006609 ORTHO05D008551 1.7e-79 300.1 245 61.6
RcHm_v2.0_Chr6g0306561 Rosa chinensis HOM05D006609 ORTHO05D008551 2.2e-79 299.7 251 61.8
Nn8g39112 Nelumbo nucifera HOM05D006609 ORTHO05D008551 3.8e-79 298.9 252 62.7
MELO3C003467.2 Cucumis melo HOM05D006609 ORTHO05D008551 5.0e-79 298.5 246 64.2
Sabra06G0185800 Salix brachista HOM05D006609 ORTHO05D008551 1.1e-78 297.4 292 57.5
MBI04_g06585_MAGBIO Magnolia biondii HOM05D006609 ORTHO05D008551 1.4e-78 297.0 252 61.1
ClCG11G015120 Citrullus lanatus HOM05D006609 ORTHO05D008551 1.9e-78 296.6 246 63.8
Ah.16g105840 Amaranthus hybridus HOM05D006609 ORTHO05D008551 5.5e-78 295.0 251 59.4
Hund03393 Selenicereus undatus HOM05D006609 ORTHO05D008551 5.5e-78 295.0 251 61.0
Migut.A00197 Erythranthe guttata HOM05D006609 ORTHO05D008551 1.2e-77 293.9 251 58.2
Sopen12g031720 Solanum pennellii HOM05D006609 ORTHO05D008551 1.2e-77 293.9 259 59.5
Dinv27894 Davidia involucrata HOM05D006609 ORTHO05D008551 6.1e-77 291.6 227 66.1
Gorai.009G049200 Gossypium raimondii HOM05D006609 ORTHO05D008551 1.4e-76 290.4 230 63.5
Haze_21897 Corylus avellana HOM05D006609 ORTHO05D008551 1.8e-76 290.0 251 61.4
ATR0705G113 Amborella trichopoda HOM05D006609 ORTHO05D008551 2.6e-75 286.2 246 60.2
Peaxi162Scf00064g01521 Petunia axillaris HOM05D006609 ORTHO05D008551 4.4e-75 285.4 248 58.5
Sed0023433 Sechium edule HOM05D006609 ORTHO05D008551 5.7e-75 285.0 246 61.0
CAN.G208.62 Capsicum annuum HOM05D006609 ORTHO05D008551 9.7e-75 284.3 251 58.2
Atru.chr7.2079 Acer truncatum HOM05D006609 ORTHO05D008551 1.3e-74 283.9 218 66.1
FAN27G2415 Fragaria x ananassa HOM05D006609 ORTHO05D008551 1.7e-74 283.5 251 61.0
THA.LOC104808485 Tarenaya hassleriana HOM05D006609 ORTHO05D008551 1.1e-73 280.8 246 60.6
Hma1.2p1_1138F.1_g260815 Hydrangea macrophylla HOM05D006609 ORTHO05D008551 1.4e-73 280.4 228 62.7
MSTRG.25911 Avicennia marina HOM05D006609 ORTHO05D008551 1.8e-73 280.0 262 56.5
Cc08_g09720 Coffea canephora HOM05D006609 ORTHO05D008551 2.4e-73 279.6 247 60.3
FAN20G1237 Fragaria x ananassa HOM05D006609 ORTHO05D008551 3.1e-73 279.3 251 60.6
PSO824G0011 Papaver somniferum HOM05D006609 ORTHO05D008551 5.3e-73 278.5 260 54.2
RhsimUnG0061900 Rhododendron simsii HOM05D006609 ORTHO05D008551 1.6e-72 276.9 227 60.8
AUR62042442 Chenopodium quinoa HOM05D006609 ORTHO05D008551 2.0e-72 276.6 250 56.4
FAN15G1983 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.0e-72 276.6 251 60.2
Sp6g31980 Schrenkiella parvula HOM05D006609 ORTHO05D008551 2.0e-72 276.6 249 55.8
Sc09g0009360 Simmondsia chinensis HOM05D006609 ORTHO05D008551 2.0e-72 276.6 251 59.0
AL6G22350 Arabidopsis lyrata HOM05D006609 ORTHO05D008551 2.6e-72 276.2 249 56.6
CsaV3_3G048520 Cucumis sativus L. HOM05D006609 ORTHO05D008551 2.6e-72 276.2 230 63.9
PGSC0003DMG400029395 Solanum tuberosum HOM05D006609 ORTHO05D008551 3.5e-72 275.8 238 60.1
PSO173G0006 Papaver somniferum HOM05D006609 ORTHO05D008551 4.5e-72 275.4 250 55.2
Solyc12g095820.3 Solanum lycopersicum HOM05D006609 ORTHO05D008551 4.5e-72 275.4 238 60.5
CARHR201580 Cardamine hirsuta HOM05D006609 ORTHO05D008551 2.2e-71 273.1 249 56.6
Eucgr.C00603 Eucalyptus grandis HOM05D006609 ORTHO05D008551 2.9e-71 272.7 230 60.4
Thhalv10014470m.g Eutrema salsugineum HOM05D006609 ORTHO05D008551 6.5e-71 271.6 249 56.2
Rhsim02G0176600 Rhododendron simsii HOM05D006609 ORTHO05D008551 6.5e-71 271.6 227 59.9
BcaC03g13384 Brassica carinata HOM05D006609 ORTHO05D008551 1.9e-70 270.0 248 55.6
C02p05310 Brassica napus HOM05D006609 ORTHO05D008551 1.9e-70 270.0 248 55.6
BolC2t06479H Brassica oleracea HOM05D006609 ORTHO05D008551 1.9e-70 270.0 248 55.6
A02p01130 Brassica napus HOM05D006609 ORTHO05D008551 4.2e-70 268.9 244 56.6
BraA02t05092Z Brassica rapa HOM05D006609 ORTHO05D008551 4.2e-70 268.9 244 56.6
Aa31LG3G15550 Aethionema arabicum HOM05D006609 ORTHO05D008551 7.2e-70 268.1 248 55.2
Lsat_1_v5_gn_6_22680 Lactuca sativa HOM05D006609 ORTHO05D008551 1.6e-69 266.9 240 55.4
BraA10t44672Z Brassica rapa HOM05D006609 ORTHO05D008551 4.7e-69 265.4 249 54.6
BcaC04g19208 Brassica carinata HOM05D006609 ORTHO05D008551 1.0e-68 264.2 249 54.6
BolC9t59347H Brassica oleracea HOM05D006609 ORTHO05D008551 1.0e-68 264.2 249 54.6
Gohir.A05G046200 Gossypium hirsutum HOM05D006609 ORTHO05D008551 2.3e-68 263.1 204 64.2
SalBow4G0386 Salvia bowleyana HOM05D006609 ORTHO05D008551 6.8e-68 261.5 233 57.1
HPP92_021778 Vanilla planifolia HOM05D006609 ORTHO05D008551 2.0e-67 260.0 248 54.0
C09p65180 Brassica napus HOM05D006609 ORTHO05D008551 3.7e-66 255.8 249 54.2
A10p26110 Brassica napus HOM05D006609 ORTHO05D008551 3.1e-65 252.7 274 48.5
Carub.0006s1012 Capsella rubella HOM05D006609 ORTHO05D008551 4.5e-64 248.8 217 57.6
Zm00001eb337980 Zea mays HOM05D006609 ORTHO05D008551 1.1e-62 244.2 248 54.8
Os01g0200400 Oryza sativa ssp. japonica HOM05D006609 ORTHO05D008551 4.7e-61 238.8 249 53.8
SGA_v2.0_scaffold243G44286 Striga asiatica HOM05D006609 ORTHO05D008551 9.8e-59 231.1 249 49.4
BcaB08g37036 Brassica carinata HOM05D006609 ORTHO05D008551 2.2e-58 229.9 253 50.2
Nitab4.5_0001737g0100 Nicotiana tabacum HOM05D006609 ORTHO05D008551 6.3e-58 228.4 245 53.5
AT5G11640 Arabidopsis thaliana HOM05D006609 ORTHO05D008551 3.1e-57 226.1 187 59.4
HanXRQChr13g0402211 Helianthus annuus HOM05D006609 ORTHO05D008551 2.3e-55 219.9 186 58.1
Nitab4.5_0001309g0120 Nicotiana tabacum HOM05D006609 ORTHO05D008551 5.0e-55 218.8 326 41.7
Cpa.g.sc78.16 Carica papaya HOM05D006609 ORTHO05D008551 9.8e-51 204.5 224 51.8
AUR62009264 Chenopodium quinoa HOM05D006609 ORTHO05D008551 2.4e-49 199.9 169 58.6
Prupe.1G447200 Prunus persica HOM05D006609 ORTHO05D008551 3.2e-49 199.5 165 62.4
DCAR_000757 Daucus carota HOM05D006609 ORTHO05D010582 3.9e-47 192.6 245 46.5
BcaNung02663 Brassica carinata HOM05D006609 ORTHO05D008551 6.8e-44 181.8 146 61.6
ECA233G1748 Erigeron canadensis HOM05D006609 ORTHO05D008551 2.1e-37 160.2 137 60.6
unitig_93.g30708 Utricularia gibba HOM05D006609 ORTHO05D008551 6.4e-34 148.7 247 39.7
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 1.0e-31 141.4 136 52.2
vmacro11054 Vaccinium macrocarpon HOM05D006609 ORTHO05D008551 3.0e-31 139.8 110 65.5
FAN24G0356 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.3e-28 130.2 116 57.8
FAN24G3337 Fragaria x ananassa HOM05D006609 ORTHO05D008551 2.3e-28 130.2 116 57.8
EL10Ac2g04002 Beta vulgaris HOM05D006609 ORTHO05D008551 1.9e-22 110.5 206 35.4
SEGI_38144 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 2.5e-22 110.2 89 60.7
SMO144G0045 Selaginella moellendorffii HOM05D006609 ORTHO05D008551 2.0e-19 100.5 154 38.3
HanXRQChr16g0519661 Helianthus annuus HOM05D006609 ORTHO05D008551 2.6e-19 100.1 134 45.5
FAN24G1965 Fragaria x ananassa HOM05D006609 ORTHO05D008551 4.9e-18 95.9 82 62.2
PRCOL_00006038 Prasinoderma coloniale HOM05D006609 ORTHO05D008551 1.1e-17 94.7 223 28.3
SEGI_39152 Sequoiadendron giganteum HOM05D006609 ORTHO05D008551 3.9e-15 86.3 94 50.0
QL09p008974 Quercus lobata HOM05D006609 ORTHO05D008551 1.3e-13 81.3 71 60.6
Haze_26101 Corylus avellana HOM05D006609 ORTHO05D008551 1.3e-10 71.2 122 36.1
Cre10.g426400 Chlamydomonas reinhardtii HOM05D006609 ORTHO05D008551 8.4e-10 68.6 220 26.4
arahy.Tifrunner.gnm1.ann1.WH0W9H Arachis hypogaea HOM05D006609 ORTHO05D008551 2.5e-06 57.0 47 55.3


User provided reference genes

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