Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0027306 Lotus japonicus HOM05D006739 ORTHO05D008402 1.2e-86 325.1 245 100.0
VMungo1309G0048 Vigna mungo HOM05D006739 ORTHO05D008402 7.6e-38 162.9 246 71.1
Phvul.009G145100 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 6.4e-37 159.8 246 71.5
Glyma.06G092600 Glycine max HOM05D006739 ORTHO05D008402 1.3e-34 152.1 249 69.5
Glyma.04G090900 Glycine max HOM05D006739 ORTHO05D008402 5.1e-34 150.2 249 69.5
Atru.chr13.953 Acer truncatum HOM05D006739 ORTHO05D008402 5.3e-23 113.6 162 47.5
Ciclev10000605m.g Citrus clementina HOM05D006739 ORTHO05D008402 2.6e-22 111.3 173 45.1
MD08G1206600 Malus domestica HOM05D006739 ORTHO05D008402 3.2e-20 104.4 171 44.4
RcHm_v2.0_Chr7g0233521 Rosa chinensis HOM05D006739 ORTHO05D008402 3.2e-20 104.4 170 41.2
Phvul.008G184000 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 5.5e-20 103.6 98 59.2
COL.COLO4_35303 Corchorus olitorius HOM05D006739 ORTHO05D008402 9.3e-20 102.8 148 42.6
Glyma.14G184200 Glycine max HOM05D006739 ORTHO05D008402 1.2e-19 102.4 129 54.3
Cfa013823 Carpinus fangiana HOM05D006739 ORTHO05D008402 1.6e-19 102.1 168 44.0
Haze_22495 Corylus avellana HOM05D006739 ORTHO05D008402 1.6e-19 102.1 157 47.8
FvH4_5g34030 Fragaria vesca HOM05D006739 ORTHO05D008402 1.6e-19 102.1 170 41.8
FAN08G0673 Fragaria x ananassa HOM05D006739 ORTHO05D008402 1.6e-19 102.1 170 42.4
FAN18G3137 Fragaria x ananassa HOM05D006739 ORTHO05D008402 1.6e-19 102.1 170 41.8
Dinv44882 Davidia involucrata HOM05D006739 ORTHO05D008402 2.1e-19 101.7 164 42.7
MD15G1390100 Malus domestica HOM05D006739 ORTHO05D008402 2.1e-19 101.7 171 41.5
QL12p039876 Quercus lobata HOM05D006739 ORTHO05D008402 1.0e-18 99.4 240 56.7
CiPaw.08G057600 Carya illinoinensis HOM05D006739 ORTHO05D008402 3.0e-18 97.8 174 42.0
Manes.05G187600 Manihot esculenta HOM05D006739 ORTHO05D008402 3.0e-18 97.8 165 41.2
Glyma.14G184300 Glycine max HOM05D006739 ORTHO05D008402 5.1e-18 97.1 148 43.9
arahy.Tifrunner.gnm1.ann1.CH37P4 Arachis hypogaea HOM05D006739 ORTHO05D008402 8.7e-18 96.3 170 44.1
Psat5g018720 Pisum sativum HOM05D006739 ORTHO05D008402 8.7e-18 96.3 154 39.6
Peaxi162Scf01212g00003 Petunia axillaris HOM05D006739 ORTHO05D008402 1.1e-17 95.9 158 41.1
Thecc.08G075400 Theobroma cacao HOM05D006739 ORTHO05D008402 1.1e-17 95.9 245 60.4
VMungo0647G0534 Vigna mungo HOM05D006739 ORTHO05D008402 1.9e-17 95.1 161 43.5
ClCG08G011830 Citrullus lanatus HOM05D006739 ORTHO05D008402 3.3e-17 94.4 239 59.4
Glyma.02G216900 Glycine max HOM05D006739 ORTHO05D008402 4.3e-17 94.0 98 57.1
Nitab4.5_0002667g0060 Nicotiana tabacum HOM05D006739 ORTHO05D008402 4.3e-17 94.0 158 43.0
Sabra02G0086200 Salix brachista HOM05D006739 ORTHO05D008402 4.3e-17 94.0 158 42.4
TAR628G0153 Trochodendron aralioides HOM05D006739 ORTHO05D008402 5.6e-17 93.6 125 47.2
Nitab4.5_0002667g0050 Nicotiana tabacum HOM05D006739 ORTHO05D008402 1.3e-16 92.4 158 40.5
Eucgr.F02164 Eucalyptus grandis HOM05D006739 ORTHO05D008402 1.6e-16 92.0 183 42.1
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 2.1e-16 91.7 166 43.4
Phvul.008G183900 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 2.8e-16 91.3 117 51.3
Lsat_1_v5_gn_1_781 Lactuca sativa HOM05D006739 ORTHO05D008402 3.7e-16 90.9 148 44.6
Prupe.1G539000 Prunus persica HOM05D006739 ORTHO05D008402 4.8e-16 90.5 168 41.1
EL10Ac1g00466 Beta vulgaris HOM05D006739 ORTHO05D008402 8.2e-16 89.7 170 37.6
Migut.N00013 Erythranthe guttata HOM05D006739 ORTHO05D008402 8.2e-16 89.7 160 43.8
ECA247G1663 Erigeron canadensis HOM05D006739 ORTHO05D008402 1.1e-15 89.4 149 40.3
THA.LOC104816789 Tarenaya hassleriana HOM05D006739 ORTHO05D008402 1.4e-15 89.0 158 43.0
Potri.002G109500 Populus trichocarpa HOM05D006739 ORTHO05D008402 1.8e-15 88.6 160 42.5
Sed0004950 Sechium edule HOM05D006739 ORTHO05D008402 1.8e-15 88.6 249 59.4
CARHR009960 Cardamine hirsuta HOM05D006739 ORTHO05D008402 3.1e-15 87.8 154 40.3
Duzib116G0618 Durio zibethinus HOM05D006739 ORTHO05D008402 3.1e-15 87.8 148 39.9
Hma1.2p1_0010F.1_g006410 Hydrangea macrophylla HOM05D006739 ORTHO05D008402 3.1e-15 87.8 166 41.0
Duzib093G0111 Durio zibethinus HOM05D006739 ORTHO05D008402 5.3e-15 87.0 154 39.6
Sp1g08530 Schrenkiella parvula HOM05D006739 ORTHO05D008402 6.9e-15 86.7 173 37.6
CSS0033703 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 9.0e-15 86.3 167 38.9
CSS0036090 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 9.0e-15 86.3 167 38.9
Sc15g0003370 Simmondsia chinensis HOM05D006739 ORTHO05D008402 1.2e-14 85.9 138 43.5
Aa31LG1G4990 Aethionema arabicum HOM05D006739 ORTHO05D008402 1.5e-14 85.5 111 47.7
AT1G09900 Arabidopsis thaliana HOM05D006739 ORTHO05D008402 1.5e-14 85.5 158 41.1
TWI56G0071 Tripterygium wilfordii HOM05D006739 ORTHO05D008402 2.0e-14 85.1 167 39.5
VMungo0647G1229 Vigna mungo HOM05D006739 ORTHO05D008402 2.0e-14 85.1 95 53.7
Ca_15539_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 3.4e-14 84.3 157 40.1
Ah.05g171720 Amaranthus hybridus HOM05D006739 ORTHO05D008402 5.8e-14 83.6 166 38.0
Carub.0001s0928 Capsella rubella HOM05D006739 ORTHO05D008402 5.8e-14 83.6 161 42.2
Gohir.A06G030375 Gossypium hirsutum HOM05D006739 ORTHO05D008402 5.8e-14 83.6 151 38.4
Gorai.010G032500 Gossypium raimondii HOM05D006739 ORTHO05D008402 1.3e-13 82.4 151 37.7
Gohir.D06G029600 Gossypium hirsutum HOM05D006739 ORTHO05D008402 1.7e-13 82.0 91 49.5
AL1G20500 Arabidopsis lyrata HOM05D006739 ORTHO05D008402 2.2e-13 81.6 158 39.9
Oeu020282.1 Olea europaea HOM05D006739 ORTHO05D008402 3.8e-13 80.9 60 65.0
Sopen06g003030 Solanum pennellii HOM05D006739 ORTHO05D008402 3.8e-13 80.9 168 36.3
PGSC0003DMG400014713 Solanum tuberosum HOM05D006739 ORTHO05D008402 6.5e-13 80.1 172 35.5
PGSC0003DMG400027357 Solanum tuberosum HOM05D006739 ORTHO05D008402 6.5e-13 80.1 172 35.5
BolC5t29554H Brassica oleracea HOM05D006739 ORTHO05D008402 8.4e-13 79.7 107 47.7
BraA06t23875Z Brassica rapa HOM05D006739 ORTHO05D008402 8.4e-13 79.7 107 46.7
MELO3C011106.2 Cucumis melo HOM05D006739 ORTHO05D008402 8.4e-13 79.7 252 57.1
CsaV3_2G030450 Cucumis sativus L. HOM05D006739 ORTHO05D008402 8.4e-13 79.7 180 67.8
MSTRG.24837 Avicennia marina HOM05D006739 ORTHO05D008402 1.1e-12 79.3 96 49.0
A06p06610 Brassica napus HOM05D006739 ORTHO05D008402 2.5e-12 78.2 109 46.8
C05p08020 Brassica napus HOM05D006739 ORTHO05D008402 3.2e-12 77.8 115 45.2
BcaC05g24834 Brassica carinata HOM05D006739 ORTHO05D008402 7.1e-12 76.6 242 58.3
HanXRQChr11g0324241 Helianthus annuus HOM05D006739 ORTHO05D008402 7.1e-12 76.6 52 65.4
AUR62014385 Chenopodium quinoa HOM05D006739 ORTHO05D008402 9.3e-12 76.3 87 48.3
MBI16_g36544_MAGBIO Magnolia biondii HOM05D006739 ORTHO05D008402 1.2e-11 75.9 137 38.0
Hund26833 Selenicereus undatus HOM05D006739 ORTHO05D008402 1.2e-11 75.9 154 37.0
TAR152G0001 Trochodendron aralioides HOM05D006739 ORTHO05D008402 1.2e-11 75.9 103 48.5
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 4.6e-11 73.9 125 43.2
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 4.6e-11 73.9 125 43.2
DCAR_019326 Daucus carota HOM05D006739 ORTHO05D008402 6.1e-11 73.6 171 36.3
AUR62019126 Chenopodium quinoa HOM05D006739 ORTHO05D008402 1.0e-10 72.8 78 50.0
DCAR_012846 Daucus carota HOM05D006739 ORTHO05D008402 1.3e-10 72.4 170 37.6
PSO700G0042 Papaver somniferum HOM05D006739 ORTHO05D008402 1.8e-10 72.0 82 52.4
PSO761G0270 Papaver somniferum HOM05D006739 ORTHO05D008402 1.8e-10 72.0 163 40.5
Rhsim07G0214200 Rhododendron simsii HOM05D006739 ORTHO05D008402 2.3e-10 71.6 163 36.8
SalBow5G4649 Salvia bowleyana HOM05D006739 ORTHO05D008402 6.7e-10 70.1 52 63.5
PGR042G0142 Punica granatum HOM05D006739 ORTHO05D008402 8.7e-10 69.7 45 73.3
Hund26853 Selenicereus undatus HOM05D006739 ORTHO05D008402 8.7e-10 69.7 137 38.0
TPR.G12357 Trifolium pratense HOM05D006739 ORTHO05D008402 8.7e-10 69.7 151 35.8
Actinidia19611 Actinidia chinensis HOM05D006739 ORTHO05D008402 4.3e-09 67.4 152 36.2
Aqoxy5G01872 Aquilegia oxysepala HOM05D006739 ORTHO05D008402 5.7e-09 67.0 157 35.7
SGA_v2.0_scaffold123G33426 Striga asiatica HOM05D006739 ORTHO05D008402 1.6e-08 65.5 155 35.5
ATR0800G015 Amborella trichopoda HOM05D006739 ORTHO05D008402 2.8e-08 64.7 95 44.2
Hund26854 Selenicereus undatus HOM05D006739 ORTHO05D008402 6.3e-08 63.5 154 36.4
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 6.3e-08 63.5 156 36.5
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 8.2e-08 63.2 177 44.1
Hund26842 Selenicereus undatus HOM05D006739 ORTHO05D008402 1.1e-07 62.8 95 41.1
CAN.G941.26 Capsicum annuum HOM05D006739 ORTHO05D008402 1.4e-07 62.4 40 70.0
TAR381G0861 Trochodendron aralioides HOM05D006739 ORTHO05D008402 3.1e-07 61.2 107 39.3
CDE06G1140 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 4.1e-07 60.8 95 42.1
CDE04G0064 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 5.3e-07 60.5 114 37.7
TPR.G15758 Trifolium pratense HOM05D000069 ORTHO05D001849 9.0e-07 59.7 157 35.0
Lalb_Chr08g0242631 Lupinus albus HOM05D006739 ORTHO05D008402 1.2e-06 59.3 33 84.8
CANSAT25G1844 Cannabis sativa HOM05D006739 ORTHO05D008402 2.6e-06 58.2 138 35.5
CDE07G2071 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 2.6e-06 58.2 106 37.7
vmacro04630 Vaccinium macrocarpon HOM05D006739 ORTHO05D008402 4.5e-06 57.4 164 32.3


User provided reference genes

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