Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0027277 Lotus japonicus HOM05D000898 ORTHO05D030013 1.5e-231 805.8 400 100.0
Lj5g0014284 Lotus japonicus HOM05D000045 ORTHO05D000067 3.7e-25 120.2 64 85.9
Lj1g0005830 Lotus japonicus HOM05D000045 ORTHO05D003357 1.1e-24 118.6 79 65.8
Lj6g0018942 Lotus japonicus HOM05D000045 ORTHO05D000067 1.1e-24 118.6 79 65.8
LjContig00126g0012758 Lotus japonicus HOM05D000045 ORTHO05D000067 1.1e-24 118.6 79 65.8
Lj1g0001785 Lotus japonicus HOM05D000045 ORTHO05D007788 2.9e-22 110.5 80 61.2
Lj4g0015383 Lotus japonicus HOM05D000045 ORTHO05D000067 2.9e-22 110.5 80 61.2
Lj6g0003423 Lotus japonicus HOM05D009753 ORTHO05D010597 1.6e-20 104.8 152 40.8
TPR.G24615 Trifolium pratense HOM05D000045 ORTHO05D000067 2.3e-19 100.9 85 54.1
TPR.G36249 Trifolium pratense HOM05D000045 ORTHO05D010597 1.2e-18 98.6 117 41.9
TPR.G14784 Trifolium pratense HOM05D000045 ORTHO05D010597 1.5e-18 98.2 75 57.3
Medtr7g446480 Medicago truncatula HOM05D000045 ORTHO05D000067 3.4e-18 97.1 135 38.5
TPR.G9545 Trifolium pratense HOM05D000045 ORTHO05D000067 7.5e-18 95.9 73 60.3
TPR.G14690 Trifolium pratense HOM05D000045 ORTHO05D003357 1.7e-17 94.7 78 50.0
TPR.G28587 Trifolium pratense HOM05D000045 ORTHO05D003357 2.8e-17 94.0 72 55.6
Medtr7g446520 Medicago truncatula HOM05D000045 ORTHO05D009139 4.9e-17 93.2 79 53.2
Medtr7g446510 Medicago truncatula HOM05D000045 ORTHO05D000067 8.3e-17 92.4 73 56.2
TPR.G5153 Trifolium pratense HOM05D000045 ORTHO05D010597 1.1e-16 92.0 73 56.2
Lj3g0000730 Lotus japonicus HOM05D000045 ORTHO05D010597 4.1e-16 90.1 134 35.8
TPR.G23136 Trifolium pratense HOM05D000045 ORTHO05D010597 7.0e-16 89.4 110 37.3
Lj3g0023941 Lotus japonicus HOM05D005194 ORTHO05D003357 9.2e-16 89.0 242 28.1
Lj3g0002255 Lotus japonicus HOM05D005194 ORTHO05D003357 2.7e-15 87.4 57 66.7
Lj5g0006079 Lotus japonicus HOM05D000045 ORTHO05D003357 5.0e-14 83.2 80 51.2
TPR.G3230 Trifolium pratense HOM05D000045 ORTHO05D010597 1.1e-13 82.0 81 49.4
Lj4g0003455 Lotus japonicus HOM05D000045 ORTHO05D003357 9.5e-13 79.0 72 51.4
Lj1g0018802 Lotus japonicus HOM05D000898 ORTHO05D030013 1.6e-12 78.2 70 67.1
Lj3g0007626 Lotus japonicus HOM05D000898 ORTHO05D030013 3.6e-12 77.0 72 65.3
Lj4g0006682 Lotus japonicus HOM05D000898 ORTHO05D036506 3.6e-12 77.0 72 65.3
arahy.Tifrunner.gnm1.ann1.RPVA7B Arachis hypogaea HOM05D000045 ORTHO05D000067 8.0e-12 75.9 77 41.6
arahy.Tifrunner.gnm1.ann1.YPLZ25 Arachis hypogaea HOM05D000045 ORTHO05D000067 8.0e-12 75.9 77 41.6
Lj3g0008758 Lotus japonicus HOM05D009753 ORTHO05D010597 1.0e-11 75.5 114 36.8
Lj5g0006970 Lotus japonicus HOM05D009753 ORTHO05D010597 1.0e-11 75.5 114 36.8
arahy.Tifrunner.gnm1.ann1.U80MXJ Arachis hypogaea HOM05D000045 ORTHO05D000067 1.8e-11 74.7 83 42.2
Medtr7g028855 Medicago truncatula HOM05D005194 ORTHO05D009139 7.5e-10 69.3 61 52.5
TPR.G12353 Trifolium pratense HOM05D000045 ORTHO05D003357 1.3e-09 68.6 148 34.5
Psat5g260800 Pisum sativum HOM05D005058 ORTHO05D009139 6.4e-09 66.2 159 29.6
Lj2g0016333 Lotus japonicus HOM05D000898 ORTHO05D030013 8.3e-09 65.9 34 94.1
Rhsim06G0101500 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.4e-08 65.1 82 36.6
Rhsim05G0139300 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.8e-08 64.7 110 30.0
FvH4_3g26554 Fragaria vesca HOM05D000045 ORTHO05D012261 2.4e-08 64.3 74 40.5
Lj3g0015805 Lotus japonicus HOM05D005194 ORTHO05D003357 3.2e-08 63.9 47 59.6
Rhsim01G0090200 Rhododendron simsii HOM05D000045 ORTHO05D000067 4.1e-08 63.5 79 35.4
Rhsim04G0161500 Rhododendron simsii HOM05D000045 ORTHO05D000067 5.4e-08 63.2 79 35.4
Rhsim08G0146600 Rhododendron simsii HOM05D000045 ORTHO05D000067 5.4e-08 63.2 76 36.8
RhsimUnG0178400 Rhododendron simsii HOM05D000045 ORTHO05D000067 5.4e-08 63.2 79 35.4
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 7.0e-08 62.8 79 35.4
Rhsim03G0160300 Rhododendron simsii HOM05D000045 ORTHO05D000067 9.2e-08 62.4 108 32.4
TPR.G17110 Trifolium pratense HOM05D005194 ORTHO05D009139 9.2e-08 62.4 50 54.0
TPR.G25223 Trifolium pratense HOM05D011457 ORTHO05D009139 9.2e-08 62.4 52 55.8
FvH4_7g03536 Fragaria vesca HOM05D012208 ORTHO05D012261 1.2e-07 62.0 74 37.8
CAN.G1330.21 Capsicum annuum HOM05D000045 ORTHO05D000067 1.6e-07 61.6 78 35.9
Rhsim03G0019600 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.6e-07 61.6 84 35.7
TPR.G2699 Trifolium pratense HOM05D000045 ORTHO05D000067 2.7e-07 60.8 77 36.4
Lj6g0022528 Lotus japonicus HOM05D005194 ORTHO05D010597 3.5e-07 60.5 54 50.0
Rhsim05G0121500 Rhododendron simsii HOM05D000045 ORTHO05D000067 5.9e-07 59.7 69 40.6
RhsimUnG0161100 Rhododendron simsii HOM05D000045 ORTHO05D000067 5.9e-07 59.7 79 32.9
TPR.G40442 Trifolium pratense HOM05D000045 ORTHO05D000067 5.9e-07 59.7 79 36.7
Psat2g000440 Pisum sativum HOM05D000045 ORTHO05D000067 7.8e-07 59.3 79 35.4
Atru.chr3.1746 Acer truncatum HOM05D000045 ORTHO05D000067 1.0e-06 58.9 86 30.2
Atru.chr4.298 Acer truncatum HOM05D000045 ORTHO05D000067 1.0e-06 58.9 86 30.2
TPR.G9983 Trifolium pratense HOM05D000045 ORTHO05D007522 1.0e-06 58.9 82 31.7
FvH4_1g08310 Fragaria vesca HOM05D000045 ORTHO05D029572 1.3e-06 58.5 98 27.6
Lj1g0023623 Lotus japonicus HOM05D000045 ORTHO05D007522 1.7e-06 58.2 74 39.2
FvH4_5g16041 Fragaria vesca HOM05D000045 ORTHO05D003357 2.3e-06 57.8 72 36.1
Rhsim02G0102200 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.3e-06 57.8 82 32.9
TPR.G18639 Trifolium pratense HOM05D000045 ORTHO05D000067 2.3e-06 57.8 79 34.2
TPR.G9519 Trifolium pratense HOM05D000045 ORTHO05D000067 2.3e-06 57.8 74 36.5
TPR.G20418 Trifolium pratense HOM05D015175 ORTHO05D007522 3.0e-06 57.4 135 25.9
TPR.G40841 Trifolium pratense HOM05D000045 ORTHO05D007522 3.0e-06 57.4 82 31.7
Atru.chr1.2070 Acer truncatum HOM05D000045 ORTHO05D000067 3.9e-06 57.0 68 38.2
C03p26170 Brassica napus HOM05D000045 ORTHO05D000067 3.9e-06 57.0 79 32.9
Lalb_Chr01g0008281 Lupinus albus HOM05D000045 ORTHO05D007522 3.9e-06 57.0 77 36.4
Medtr1g070355 Medicago truncatula HOM05D000045 ORTHO05D007522 3.9e-06 57.0 77 35.1
QL06p053456 Quercus lobata HOM05D000045 ORTHO05D000067 3.9e-06 57.0 83 34.9
Rhsim11G0186200 Rhododendron simsii HOM05D000045 ORTHO05D000067 3.9e-06 57.0 82 31.7
RcHm_v2.0_Chr3g0476211 Rosa chinensis HOM05D000045 ORTHO05D000067 3.9e-06 57.0 75 34.7
TPR.G28057 Trifolium pratense HOM05D000045 ORTHO05D000067 3.9e-06 57.0 79 34.2
Atru.chr13.1929 Acer truncatum HOM05D000045 ORTHO05D000067 5.0e-06 56.6 86 30.2
Sabra04G0140900 Salix brachista HOM05D000045 ORTHO05D000067 5.0e-06 56.6 107 31.8
AL7G10080 Arabidopsis lyrata HOM05D000045 ORTHO05D000067 6.6e-06 56.2 96 35.4
AT4G38180 Arabidopsis thaliana HOM05D000045 ORTHO05D000067 6.6e-06 56.2 96 35.4
BraA03t11442Z Brassica rapa HOM05D000045 ORTHO05D000067 6.6e-06 56.2 105 32.4
Lj5g0011132 Lotus japonicus HOM05D009753 ORTHO05D010597 6.6e-06 56.2 135 28.1
Lalb_Chr10g0107721 Lupinus albus HOM05D000045 ORTHO05D000067 6.6e-06 56.2 78 33.3
Phvul.002G119401 Phaseolus vulgaris HOM05D000045 ORTHO05D000067 6.6e-06 56.2 83 33.7
Atru.chr3.19 Acer truncatum HOM05D000045 ORTHO05D000067 8.6e-06 55.8 83 33.7
CSS0018875 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 8.6e-06 55.8 79 35.4
Rhsim10G0060900 Rhododendron simsii HOM05D000045 ORTHO05D000067 8.6e-06 55.8 82 31.7


User provided reference genes

Program Settings