Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 8.3e-73 276.9 140 100.0
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 5.2e-59 231.1 140 87.9
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 5.4e-40 167.9 136 66.9
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 1.3e-36 156.8 135 64.4
Medtr7g082730 Medicago truncatula HOM05D004062 ORTHO05D004417 6.4e-33 144.4 129 65.9
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 4.2e-32 141.7 144 57.6
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 4.2e-32 141.7 144 57.6
VMungo1383G0607 Vigna mungo HOM05D004062 ORTHO05D004417 4.2e-32 141.7 140 56.4
Ca_08095_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 2.7e-31 139.0 129 61.2
VMungo1383G2158 Vigna mungo HOM05D004062 ORTHO05D004417 7.9e-31 137.5 142 52.8
Medtr7g082740 Medicago truncatula HOM05D004062 ORTHO05D004417 1.3e-30 136.7 129 65.1
Glyma.02G089500 Glycine max HOM05D004062 ORTHO05D004417 2.3e-30 136.0 143 57.3
Medtr7g082700 Medicago truncatula HOM05D004062 ORTHO05D004417 3.9e-30 135.2 129 64.3
Ca_08096_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 5.1e-30 134.8 129 60.5
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 5.1e-30 134.8 136 57.4
Lalb_Chr17g0335981 Lupinus albus HOM05D004062 ORTHO05D004417 1.1e-29 133.7 140 55.7
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 1.9e-29 132.9 131 50.4
Phvul.008G008700 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 9.6e-29 130.6 135 54.8
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 2.8e-28 129.0 129 48.8
Glyma.18G293500 Glycine max HOM05D004062 ORTHO05D004417 8.1e-28 127.5 141 55.3
Lalb_Chr04g0257671 Lupinus albus HOM05D004062 ORTHO05D004417 1.1e-27 127.1 140 52.1
Phvul.008G008800 Phaseolus vulgaris HOM05D004062 ORTHO05D004417 3.1e-27 125.6 139 49.6
Psat3g097360 Pisum sativum HOM05D004062 ORTHO05D004417 4.0e-27 125.2 130 60.8
Psat3g097280 Pisum sativum HOM05D004062 ORTHO05D004417 2.0e-26 122.9 141 51.8
TPR.G16550 Trifolium pratense HOM05D004062 ORTHO05D004417 1.3e-25 120.2 130 60.0
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 1.7e-25 119.8 127 50.4
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 2.9e-25 119.0 135 52.6
TPR.G16561 Trifolium pratense HOM05D004062 ORTHO05D004417 2.9e-25 119.0 131 59.5
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 6.4e-25 117.9 134 51.5
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 8.4e-25 117.5 136 50.0
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 8.4e-25 117.5 135 48.9
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 1.4e-24 116.7 134 48.5
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 1.9e-24 116.3 131 51.9
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.9e-24 116.3 130 46.9
Medtr7g082750 Medicago truncatula HOM05D004062 ORTHO05D004417 4.2e-24 115.2 141 50.4
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 5.5e-24 114.8 137 50.4
Psat3g097320 Pisum sativum HOM05D004062 ORTHO05D004417 7.1e-24 114.4 124 59.7
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 9.3e-24 114.0 126 55.6
Lj1g0017758 Lotus japonicus HOM05D004062 ORTHO05D004417 1.2e-23 113.6 146 50.7
arahy.Tifrunner.gnm1.ann1.95RUG0 Arachis hypogaea HOM05D004062 ORTHO05D004417 3.5e-23 112.1 139 49.6
arahy.Tifrunner.gnm1.ann1.EB5M6E Arachis hypogaea HOM05D004062 ORTHO05D004417 3.5e-23 112.1 139 49.6
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 4.6e-23 111.7 140 48.6
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.8e-22 109.8 130 47.7
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 3.0e-22 109.0 130 46.2
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 3.9e-22 108.6 129 46.5
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 3.9e-22 108.6 130 47.7
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 3.9e-22 108.6 125 44.8
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 8.7e-22 107.5 130 46.9
TPR.G11392 Trifolium pratense HOM05D004062 ORTHO05D004417 1.5e-21 106.7 129 49.6
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 1.9e-21 106.3 139 43.2
Ca_08097_v3 Cicer arietinum L. HOM05D004062 ORTHO05D004417 7.4e-21 104.4 140 47.9
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 9.6e-21 104.0 137 42.3
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 9.6e-21 104.0 137 42.3
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 9.6e-21 104.0 138 43.5
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 2.8e-20 102.4 133 45.1
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 3.7e-20 102.1 140 43.6
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 3.7e-20 102.1 136 44.1
TPR.G16541 Trifolium pratense HOM05D004062 ORTHO05D004417 3.7e-20 102.1 142 47.9
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 4.8e-20 101.7 133 42.9
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 8.1e-20 100.9 135 45.2
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.4e-19 100.1 131 45.8
Ciclev10013069m.g Citrus clementina HOM05D004062 ORTHO05D004417 4.0e-19 98.6 133 48.1
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 2.6e-18 95.9 133 41.4
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 2.6e-18 95.9 134 45.5
Medtr7g082760 Medicago truncatula HOM05D004062 ORTHO05D004417 2.6e-18 95.9 142 46.5
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 3.4e-18 95.5 133 41.4
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 3.4e-18 95.5 127 44.1
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 5.8e-18 94.7 135 43.0
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 5.8e-18 94.7 123 48.0
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 7.6e-18 94.4 132 44.7
Ciclev10013071m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.0e-17 94.0 131 45.8
Psat3g097240 Pisum sativum HOM05D004062 ORTHO05D004417 1.3e-17 93.6 139 46.0
Atru.chr1.1607 Acer truncatum HOM05D004062 ORTHO05D004417 8.4e-17 90.9 135 40.0
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 8.4e-17 90.9 130 44.6
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.1e-16 90.5 126 43.7
Hma1.2p1_0500F.1_g167200 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 3.2e-16 89.0 126 45.2
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 4.2e-16 88.6 133 44.4
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 7.1e-16 87.8 140 39.3
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 9.3e-16 87.4 135 37.8
DCAR_010711 Daucus carota HOM05D004062 ORTHO05D004417 2.1e-15 86.3 141 39.7
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 2.1e-15 86.3 131 37.4
PGSC0003DMG400016976 Solanum tuberosum HOM05D004062 ORTHO05D004417 2.7e-15 85.9 136 41.2
PGSC0003DMG400030667 Solanum tuberosum HOM05D004062 ORTHO05D004417 2.7e-15 85.9 136 41.2
Ciclev10018020m.g Citrus clementina HOM05D004062 ORTHO05D004417 3.5e-15 85.5 138 37.7
Lj1g0018189 Lotus japonicus HOM05D004062 ORTHO05D004417 3.5e-15 85.5 143 44.8
Migut.H00242 Erythranthe guttata HOM05D004062 ORTHO05D004417 4.6e-15 85.1 126 41.3
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 4.6e-15 85.1 123 44.7
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 7.9e-15 84.3 141 36.9
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.0e-14 84.0 139 37.4
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 1.3e-14 83.6 141 36.9
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.3e-14 83.6 141 36.9
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.3e-14 83.6 141 36.9
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.8e-14 83.2 141 36.9
Eucgr.B02857 Eucalyptus grandis HOM05D004062 ORTHO05D004417 3.0e-14 82.4 141 34.8
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 6.7e-14 81.3 128 40.6
Rhsim10G0073300 Rhododendron simsii HOM05D004062 ORTHO05D004417 6.7e-14 81.3 128 38.3
Ciclev10013668m.g Citrus clementina HOM05D004062 ORTHO05D004417 8.7e-14 80.9 138 43.5
Ciclev10017837m.g Citrus clementina HOM05D004062 ORTHO05D004417 8.7e-14 80.9 132 40.9
DCAR_010710 Daucus carota HOM05D004062 ORTHO05D004417 8.7e-14 80.9 127 38.6
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 8.7e-14 80.9 146 40.4
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 1.1e-13 80.5 131 35.9
SalBow3G0055 Salvia bowleyana HOM05D004062 ORTHO05D004417 1.9e-13 79.7 100 47.0
Oeu012583.1 Olea europaea HOM05D004062 ORTHO05D004417 3.3e-13 79.0 123 41.5
Cpa.g.sc314.3 Carica papaya HOM05D004062 ORTHO05D004417 5.7e-13 78.2 126 38.9
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 5.7e-13 78.2 139 38.1
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.3e-12 77.0 125 40.0
DCAR_010708 Daucus carota HOM05D004062 ORTHO05D004417 1.6e-12 76.6 141 39.0
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 1.6e-12 76.6 138 38.4
MSTRG.23597 Avicennia marina HOM05D004062 ORTHO05D004417 3.7e-12 75.5 125 42.4
DCAR_010706 Daucus carota HOM05D004062 ORTHO05D004417 3.7e-12 75.5 131 40.5
Oeu041981.1 Olea europaea HOM05D004062 ORTHO05D004417 3.7e-12 75.5 135 41.5
Ciclev10017934m.g Citrus clementina HOM05D004062 ORTHO05D004417 4.8e-12 75.1 136 34.6
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 4.8e-12 75.1 120 45.8
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 4.8e-12 75.1 127 37.0
Ciclev10018255m.g Citrus clementina HOM05D004062 ORTHO05D004417 6.3e-12 74.7 139 36.7
RcHm_v2.0_Chr4g0434241 Rosa chinensis HOM05D004062 ORTHO05D004417 6.3e-12 74.7 140 35.7
EL10Ac2g04523 Beta vulgaris HOM05D004062 ORTHO05D004417 8.2e-12 74.3 133 39.1
PGR102G0077 Punica granatum HOM05D004062 ORTHO05D004417 1.1e-11 73.9 136 34.6
DCAR_010713 Daucus carota HOM05D004062 ORTHO05D004417 2.4e-11 72.8 125 41.6
FvH4_4g26582 Fragaria vesca HOM05D004062 ORTHO05D004417 2.4e-11 72.8 140 34.3
DCAR_010707 Daucus carota HOM05D004062 ORTHO05D004417 3.1e-11 72.4 129 36.4
FvH4_4g26590 Fragaria vesca HOM05D004062 ORTHO05D004417 3.1e-11 72.4 143 34.3
FAN07G0530 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.1e-11 72.0 143 34.3
Dinv16146 Davidia involucrata HOM05D004062 ORTHO05D004417 5.3e-11 71.6 125 36.0
FvH4_4g26620 Fragaria vesca HOM05D004062 ORTHO05D004417 5.3e-11 71.6 143 34.3
FAN12G1602 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.3e-11 71.6 143 34.3
FAN12G1821 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.3e-11 71.6 143 34.3
Oeu047438.1 Olea europaea HOM05D004062 ORTHO05D004417 5.3e-11 71.6 123 39.8
Aqoxy3G00188 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 6.9e-11 71.2 138 34.1
FAN12G3833 Fragaria x ananassa HOM05D004062 ORTHO05D004417 6.9e-11 71.2 142 33.8
FAN22G1944 Fragaria x ananassa HOM05D004062 ORTHO05D004417 6.9e-11 71.2 140 34.3
Hma1.2p1_0767F.1_g215470 Hydrangea macrophylla HOM05D004062 ORTHO05D004417 9.0e-11 70.9 136 34.6
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.2e-10 70.5 130 35.4
Oeu030797.1 Olea europaea HOM05D004062 ORTHO05D004417 1.5e-10 70.1 122 41.8
Oeu030798.1 Olea europaea HOM05D004062 ORTHO05D004417 1.5e-10 70.1 122 41.8
ClCG01G005940 Citrullus lanatus HOM05D004062 ORTHO05D004417 3.4e-10 68.9 130 36.2
Manes.14G107900 Manihot esculenta HOM05D004062 ORTHO05D004417 1.0e-09 67.4 133 31.6
FAN17G2061 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.3e-09 67.0 144 35.4
CDE10G0393 Ceratophyllum demersum HOM05D004062 ORTHO05D004417 1.7e-09 66.6 122 33.6
MELO3C005337.2 Cucumis melo HOM05D004062 ORTHO05D004417 2.9e-09 65.9 132 35.6
Dinv31584 Davidia involucrata HOM05D004062 ORTHO05D004417 2.9e-09 65.9 100 40.0
FAN22G1832 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.9e-09 65.9 143 32.9
Ciclev10017483m.g Citrus clementina HOM05D004062 ORTHO05D004417 6.5e-09 64.7 127 34.6
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 6.5e-09 64.7 123 36.6
Cc11_g09580 Coffea canephora HOM05D004062 ORTHO05D004417 8.5e-09 64.3 137 31.4
AUR62023219 Chenopodium quinoa HOM05D004062 ORTHO05D004417 3.2e-08 62.4 132 34.1
AUR62044612 Chenopodium quinoa HOM05D004062 ORTHO05D004417 3.2e-08 62.4 132 34.1
DCAR_010709 Daucus carota HOM05D004062 ORTHO05D004417 4.2e-08 62.0 139 34.5
Eucgr.G02232 Eucalyptus grandis HOM05D004062 ORTHO05D004417 4.2e-08 62.0 134 29.1
CDE10G1145 Ceratophyllum demersum HOM05D000286 ORTHO05D002905 5.5e-08 61.6 125 34.4
TWI31G0152 Tripterygium wilfordii HOM05D004062 ORTHO05D004417 1.2e-07 60.5 131 35.9
ATR0706G120 Amborella trichopoda HOM05D003529 ORTHO05D004106 1.6e-07 60.1 122 29.5
Atru.chr11.263 Acer truncatum HOM05D004062 ORTHO05D004417 2.1e-07 59.7 125 33.6
Atru.chr11.283 Acer truncatum HOM05D004062 ORTHO05D004417 2.1e-07 59.7 125 33.6
Migut.L00492 Erythranthe guttata HOM05D004062 ORTHO05D004417 2.1e-07 59.7 133 38.3
Actinidia25830 Actinidia chinensis HOM05D001306 ORTHO05D001159 3.6e-07 58.9 79 38.0
CiPaw.05G243400 Carya illinoinensis HOM05D004062 ORTHO05D004417 4.6e-07 58.5 125 32.0
Actinidia21017 Actinidia chinensis HOM05D001306 ORTHO05D001159 1.0e-06 57.4 103 35.0
Ah.16g101490 Amaranthus hybridus HOM05D004062 ORTHO05D004417 1.0e-06 57.4 131 32.1
Rhsim13G0007500 Rhododendron simsii HOM05D003529 ORTHO05D004106 1.0e-06 57.4 83 39.8
DCAR_010712 Daucus carota HOM05D004062 ORTHO05D004417 1.3e-06 57.0 140 35.0
HPP92_009718 Vanilla planifolia HOM05D004062 ORTHO05D004417 3.0e-06 55.8 143 30.8
Medtr7g082725 Medicago truncatula HOM05D004062 ORTHO05D004417 3.9e-06 55.5 36 83.3
SEGI_27005 Sequoiadendron giganteum HOM05D003529 ORTHO05D004106 3.9e-06 55.5 84 35.7
Oeu011480.1 Olea europaea HOM05D003529 ORTHO05D004106 8.7e-06 54.3 138 28.3


User provided reference genes

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