Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 7.1e-145 517.3 274 100.0
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 2.3e-135 485.7 274 91.6
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 8.2e-133 477.2 275 90.5
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 1.7e-130 469.5 274 89.1
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 1.7e-130 469.5 275 89.1
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 3.8e-130 468.4 275 88.4
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 5.0e-130 468.0 274 88.7
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 1.1e-129 466.8 275 89.1
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 1.2e-128 463.4 275 89.1
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 6.1e-128 461.1 275 87.3
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 3.9e-127 458.4 275 87.6
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 4.5e-123 444.9 273 83.2
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 1.7e-122 443.0 305 79.3
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 3.8e-122 441.8 273 81.7
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 7.2e-121 437.6 273 80.2
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 6.1e-120 434.5 273 80.6
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 6.1e-120 434.5 273 80.6
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 1.0e-119 433.7 274 83.2
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 3.9e-119 431.8 273 79.5
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 5.2e-119 431.4 273 79.9
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 8.8e-119 430.6 273 80.2
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 2.0e-118 429.5 273 79.9
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 2.6e-118 429.1 274 81.4
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 2.6e-118 429.1 273 78.8
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 2.6e-118 429.1 273 79.5
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 7.4e-118 427.6 274 80.3
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 7.4e-118 427.6 274 80.3
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 7.4e-118 427.6 273 79.5
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 1.3e-117 426.8 274 81.0
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 2.8e-117 425.6 273 79.1
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 1.4e-116 423.3 273 79.1
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 1.8e-116 422.9 271 80.8
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 2.4e-116 422.5 271 80.4
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 2.4e-116 422.5 273 79.5
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 4.1e-116 421.8 274 80.3
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 3.5e-115 418.7 274 79.2
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.5e-115 418.7 284 76.8
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 3.5e-115 418.7 271 79.3
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 3.5e-115 418.7 274 78.5
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 4.5e-115 418.3 275 78.9
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 1.0e-114 417.2 273 79.1
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 1.3e-114 416.8 271 77.5
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 1.3e-114 416.8 274 78.8
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.7e-114 416.4 274 76.6
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 1.7e-114 416.4 275 78.9
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 2.2e-114 416.0 272 78.7
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 2.9e-114 415.6 274 79.2
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 2.9e-114 415.6 270 79.6
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 5.0e-114 414.8 269 81.0
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 5.0e-114 414.8 273 78.0
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 8.5e-114 414.1 269 78.1
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 8.5e-114 414.1 274 78.5
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 8.5e-114 414.1 269 78.4
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 1.9e-113 412.9 271 78.2
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 4.2e-113 411.8 272 77.6
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 5.5e-113 411.4 274 75.9
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 9.4e-113 410.6 274 78.5
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 1.2e-112 410.2 271 79.3
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 1.2e-112 410.2 271 77.5
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 1.2e-112 410.2 271 77.5
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 1.6e-112 409.8 274 78.1
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.6e-112 409.8 274 75.5
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 2.1e-112 409.5 276 77.2
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 2.7e-112 409.1 274 77.0
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 2.7e-112 409.1 271 77.5
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 2.7e-112 409.1 272 77.9
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 3.6e-112 408.7 274 77.0
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 3.6e-112 408.7 274 78.5
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 4.7e-112 408.3 274 77.4
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 6.1e-112 407.9 274 77.7
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 1.0e-111 407.1 274 77.0
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 1.4e-111 406.8 274 77.0
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 1.4e-111 406.8 274 77.4
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 1.8e-111 406.4 274 76.6
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 5.2e-111 404.8 274 77.0
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 8.8e-111 404.1 289 73.4
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 1.2e-110 403.7 274 77.0
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.5e-110 403.3 273 75.8
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 3.3e-110 402.1 271 75.6
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 4.4e-110 401.7 277 76.2
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.3e-109 400.2 270 76.3
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.2e-109 399.4 270 76.3
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 2.8e-109 399.1 274 76.6
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 3.7e-109 398.7 274 76.6
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 3.7e-109 398.7 274 76.6
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 3.7e-109 398.7 274 76.6
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 4.8e-109 398.3 282 73.4
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 8.2e-109 397.5 273 74.4
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.8e-108 396.4 269 77.0
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 3.1e-108 395.6 273 74.7
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 2.7e-107 392.5 278 75.5
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 5.9e-107 391.3 265 75.1
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.3e-106 390.2 269 76.6
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 1.5e-105 386.7 316 67.4
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 1.9e-105 386.3 273 72.2
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 3.2e-105 385.6 274 72.3
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 3.2e-105 385.6 270 72.2
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 7.2e-105 384.4 270 72.2
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 2.0e-102 376.3 270 70.7
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 7.5e-102 374.4 273 72.2
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 2.8e-101 372.5 268 71.6
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 8.3e-101 370.9 269 72.1
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.4e-100 370.2 268 70.9
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.1e-100 369.0 265 70.6
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.6e-99 366.7 287 66.2
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.6e-99 366.7 332 61.1
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 3.5e-99 365.5 365 58.1
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 8.6e-98 360.9 321 62.6
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 8.6e-98 360.9 265 71.7
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 3.2e-97 359.0 266 68.0
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 1.6e-96 356.7 270 68.5
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 1.6e-96 356.7 275 66.5
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 1.0e-95 354.0 253 71.1
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.4e-92 343.6 261 67.0
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 2.9e-90 335.9 272 61.0
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 5.0e-90 335.1 271 60.1
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 4.4e-86 322.0 217 79.3
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.7e-85 320.1 484 44.4
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 2.9e-85 319.3 484 44.4
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 7.0e-84 314.7 269 60.2
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 5.0e-82 308.5 266 60.9
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 1.5e-81 307.0 255 64.7
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 6.2e-80 301.6 261 59.8
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 2.0e-78 296.6 261 59.4
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 3.4e-78 295.8 261 59.4
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 4.4e-78 295.4 255 63.5
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 2.2e-77 293.1 282 58.2
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 3.7e-77 292.4 282 58.5
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 3.2e-76 289.3 258 62.4
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 4.1e-76 288.9 259 62.5
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 7.8e-75 284.6 261 55.2
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 2.3e-74 283.1 282 57.1
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-73 280.8 282 57.1
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 1.1e-73 280.8 282 57.4
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 1.2e-72 277.3 274 53.6
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 4.4e-70 268.9 274 51.8
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 4.9e-69 265.4 296 55.1
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 1.4e-68 263.8 161 81.4
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 2.4e-68 263.1 258 59.7
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 1.2e-64 250.8 226 61.1
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 1.6e-64 250.4 281 54.1
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 3.1e-63 246.1 256 55.5
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 5.4e-60 235.3 262 50.4
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 5.1e-58 228.8 137 81.8
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.4e-55 220.7 270 49.6
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 2.4e-55 219.9 251 50.6
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-52 210.7 131 81.7
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 2.7e-51 206.5 267 48.7
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.5e-46 190.7 131 73.3
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 7.6e-46 188.3 136 72.8
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.4e-44 184.1 148 64.2
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 4.2e-44 182.6 161 64.6
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 1.3e-42 177.6 136 64.0
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 3.9e-42 176.0 417 35.5
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 4.0e-39 166.0 227 45.8
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.4e-38 162.9 129 65.1
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 4.9e-37 159.1 97 81.4
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.2e-36 156.4 119 69.7
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 2.9e-29 133.3 141 54.6
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 8.4e-29 131.7 143 53.8
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 3.2e-28 129.8 253 33.2
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 6.7e-26 122.1 260 31.5
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 1.8e-23 114.0 291 29.2
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 2.6e-22 110.2 70 82.9
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 3.8e-21 106.3 150 43.3
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 2.5e-20 103.6 111 54.1
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 1.8e-18 97.4 67 70.1
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 4.3e-17 92.8 69 63.8
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 9.7e-17 91.7 71 67.6
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 1.7e-16 90.9 82 57.3
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.7e-16 90.9 59 78.0
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 6.3e-16 89.0 53 81.1
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 1.8e-15 87.4 52 82.7
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 1.8e-15 87.4 52 82.7
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 2.4e-15 87.0 52 80.8
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 3.1e-15 86.7 52 78.8
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 3.1e-15 86.7 72 59.7
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 3.1e-15 86.7 72 59.7
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 6.9e-15 85.5 52 78.8
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 6.9e-15 85.5 72 58.3
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 7.7e-14 82.0 72 56.9
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 1.7e-13 80.9 50 76.0
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 1.6e-11 74.3 62 61.3
CAN.G102.1 Capsicum annuum HOM05D000541 ORTHO05D000137 2.4e-07 60.5 57 50.9
HanXRQChr08g0208641 Helianthus annuus HOM05D003833 ORTHO05D004209 1.5e-06 57.8 103 38.8
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 2.0e-06 57.4 52 55.8
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 4.5e-06 56.2 40 65.0


User provided reference genes

Program Settings