Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 7.7e-60 233.8 133 100.0
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 2.7e-41 172.2 129 76.0
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 3.9e-40 168.3 127 74.0
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 1.1e-39 166.8 128 73.4
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 9.7e-39 163.7 128 71.1
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 2.2e-38 162.5 129 70.5
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 4.1e-37 158.3 129 70.5
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 1.6e-33 146.4 129 66.7
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 7.5e-31 137.5 131 60.3
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 4.8e-30 134.8 129 64.3
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 5.3e-29 131.3 128 57.8
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 7.0e-29 131.0 128 56.2
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 1.6e-28 129.8 128 58.6
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.6e-28 129.8 128 58.6
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 4.5e-28 128.3 128 60.2
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 7.7e-28 127.5 123 61.8
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 1.3e-27 126.7 131 58.8
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.3e-27 126.7 131 58.8
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 2.2e-27 125.9 131 58.8
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 2.2e-27 125.9 131 58.8
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 2.2e-27 125.9 131 58.8
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.2e-27 125.9 131 58.8
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.2e-27 125.9 131 58.8
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.2e-27 125.9 131 58.8
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 2.2e-27 125.9 128 58.6
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 2.9e-27 125.6 123 60.2
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 2.9e-27 125.6 123 60.2
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 2.9e-27 125.6 128 59.4
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.8e-27 125.2 131 58.0
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 3.8e-27 125.2 128 57.8
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 5.0e-27 124.8 127 55.9
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.0e-27 124.8 131 58.8
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 6.5e-27 124.4 128 57.8
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 6.5e-27 124.4 128 60.2
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 6.5e-27 124.4 128 58.6
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 8.5e-27 124.0 128 56.2
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 8.5e-27 124.0 127 57.5
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 1.1e-26 123.6 128 60.2
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 1.5e-26 123.2 128 59.4
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 1.5e-26 123.2 129 59.7
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.5e-26 123.2 131 58.0
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.9e-26 122.9 128 60.2
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 2.5e-26 122.5 123 65.9
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 2.5e-26 122.5 128 54.7
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 7.2e-26 120.9 129 59.7
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 7.2e-26 120.9 128 57.0
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 7.2e-26 120.9 131 57.3
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 7.2e-26 120.9 129 58.1
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 9.4e-26 120.6 101 64.4
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 9.4e-26 120.6 101 64.4
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 9.4e-26 120.6 128 58.6
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 1.2e-25 120.2 131 55.0
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.2e-25 120.2 128 55.5
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 1.6e-25 119.8 120 61.7
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 2.1e-25 119.4 127 56.7
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 2.1e-25 119.4 128 58.6
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 2.1e-25 119.4 131 55.7
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 2.1e-25 119.4 128 57.8
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 2.7e-25 119.0 135 54.1
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 3.6e-25 118.6 128 56.2
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 3.6e-25 118.6 101 63.4
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 4.7e-25 118.2 131 55.7
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 4.7e-25 118.2 125 56.8
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.1e-25 117.9 131 55.7
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.1e-25 117.9 131 55.7
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 8.0e-25 117.5 123 57.7
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 8.0e-25 117.5 104 63.5
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 1.0e-24 117.1 101 67.3
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 1.0e-24 117.1 101 67.3
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 1.0e-24 117.1 101 67.3
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 1.0e-24 117.1 101 67.3
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 1.0e-24 117.1 101 67.3
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.8e-24 116.3 131 55.0
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.8e-24 116.3 125 56.0
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 1.8e-24 116.3 128 58.6
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.3e-24 115.9 129 53.5
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 3.0e-24 115.5 119 58.0
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.0e-24 115.5 131 55.0
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 3.0e-24 115.5 102 65.7
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 3.0e-24 115.5 128 54.7
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 4.0e-24 115.2 129 51.9
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 4.0e-24 115.2 125 56.0
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.0e-24 115.2 131 55.0
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 4.0e-24 115.2 107 59.8
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 4.0e-24 115.2 125 56.8
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 5.2e-24 114.8 129 57.4
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 5.2e-24 114.8 127 58.3
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 5.2e-24 114.8 128 56.2
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 5.2e-24 114.8 101 64.4
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 5.2e-24 114.8 128 57.8
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 6.8e-24 114.4 92 71.7
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 6.8e-24 114.4 128 53.9
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 6.8e-24 114.4 96 67.7
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 6.8e-24 114.4 125 56.0
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 8.8e-24 114.0 95 67.4
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 8.8e-24 114.0 128 57.0
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 8.8e-24 114.0 128 56.2
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 1.2e-23 113.6 129 56.6
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 1.2e-23 113.6 123 57.7
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 1.5e-23 113.2 103 65.0
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 1.5e-23 113.2 100 64.0
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 1.5e-23 113.2 129 55.0
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 2.0e-23 112.8 101 63.4
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.0e-23 112.8 129 58.1
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.0e-23 112.8 129 56.6
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 2.6e-23 112.5 102 62.7
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 3.4e-23 112.1 134 50.7
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 4.4e-23 111.7 128 54.7
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 4.4e-23 111.7 124 53.2
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 5.7e-23 111.3 100 66.0
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 5.7e-23 111.3 97 69.1
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 5.7e-23 111.3 129 55.0
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 9.8e-23 110.5 123 52.8
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 9.8e-23 110.5 123 52.8
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 9.8e-23 110.5 128 50.0
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 1.3e-22 110.2 128 53.9
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 1.3e-22 110.2 93 67.7
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 1.7e-22 109.8 129 56.6
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 1.7e-22 109.8 102 64.7
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 2.2e-22 109.4 102 62.7
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 2.2e-22 109.4 102 62.7
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 2.2e-22 109.4 128 53.9
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.2e-22 109.4 104 59.6
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 2.8e-22 109.0 102 62.7
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 2.8e-22 109.0 125 53.6
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 2.8e-22 109.0 126 53.2
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 3.7e-22 108.6 129 55.0
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 4.8e-22 108.2 128 53.9
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 4.8e-22 108.2 129 55.0
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 6.3e-22 107.8 128 52.3
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 8.3e-22 107.5 125 56.0
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 8.3e-22 107.5 97 60.8
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 2.4e-21 105.9 128 53.9
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 2.4e-21 105.9 124 54.0
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 5.4e-21 104.8 102 60.8
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 1.2e-20 103.6 99 57.6
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 1.6e-20 103.2 123 53.7
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 2.0e-20 102.8 129 53.5
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 2.7e-20 102.4 129 49.6
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 1.9e-18 96.3 104 57.7
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 4.2e-18 95.1 101 53.5
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 7.2e-18 94.4 104 56.7
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 9.5e-18 94.0 127 49.6
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 1.2e-17 93.6 133 51.9
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 6.1e-17 91.3 100 50.0
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.0e-16 90.5 123 43.9
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.0e-16 90.5 131 42.7
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 4.0e-16 88.6 101 50.5
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 2.0e-15 86.3 93 51.6
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 3.4e-15 85.5 115 46.1
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 4.4e-15 85.1 75 66.7
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 1.7e-14 83.2 92 52.2
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 2.8e-14 82.4 93 51.6
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 2.0e-12 76.3 131 48.9
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 1.7e-11 73.2 125 39.2
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 3.9e-11 72.0 92 50.0
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 8.6e-11 70.9 52 76.9
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 2.5e-10 69.3 102 42.2
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 2.3e-08 62.8 74 55.4
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 6.8e-08 61.2 120 40.8
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 1.2e-07 60.5 113 46.0
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 7.5e-07 57.8 73 46.6


User provided reference genes

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