Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 2105.1 1104 100.0
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1698.3 1120 79.5
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1694.1 1120 79.2
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1692.2 1125 78.0
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1677.9 1112 78.6
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1657.5 1120 77.9
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1649.4 1125 76.5
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1642.5 1116 78.3
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1595.1 1114 76.5
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1587.8 1119 75.6
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1570.4 1123 73.1
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1568.9 1124 73.2
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1557.7 1118 74.2
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1551.6 1113 74.7
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1500.0 1126 71.4
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1496.1 1115 69.0
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1496.1 1006 76.2
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1494.9 1134 69.9
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1491.5 1123 69.0
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1490.3 1132 70.7
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1489.6 1133 69.3
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1487.6 1119 70.8
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1482.6 1119 70.1
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1474.5 1128 68.3
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1466.8 1130 68.1
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1466.4 1076 70.5
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1456.0 1135 68.9
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1452.6 1105 70.4
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1450.3 1126 66.3
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1449.1 1116 69.8
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1448.0 1126 67.4
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1442.9 1123 68.6
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1440.6 1012 73.5
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1440.2 1126 67.1
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1437.9 1110 68.2
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1432.9 1120 67.3
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1432.9 1196 65.8
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1430.2 1116 68.7
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1422.9 1099 68.3
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1417.1 1051 70.7
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1414.8 1116 68.9
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1411.4 1121 68.0
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1395.2 1124 67.1
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1394.0 1235 62.2
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1389.4 1124 64.9
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1387.9 1125 66.8
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1387.1 1125 66.6
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1384.4 1125 66.9
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1361.7 1153 62.5
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1356.7 1169 63.9
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1352.4 1119 66.0
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1351.7 1106 62.7
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1351.7 1064 68.7
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1347.4 1117 65.9
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1346.6 1100 62.7
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1342.4 1057 64.9
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1336.2 1112 63.2
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1334.3 1116 61.8
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1333.5 1099 62.2
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1321.2 1121 61.7
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1321.2 1138 60.0
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1318.1 1132 62.1
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1313.5 1081 64.6
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1311.2 1110 64.1
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1306.6 1100 63.5
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1306.2 1113 63.0
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1306.2 1130 64.0
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1305.4 1132 63.3
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1303.9 1123 62.5
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1303.5 1123 64.7
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1300.4 1040 63.5
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1300.4 1120 61.6
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1300.4 1135 61.8
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1293.1 1073 61.3
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1290.4 1136 60.4
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1288.1 1040 63.0
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1287.7 1085 60.9
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1286.2 1114 61.5
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1286.2 1113 60.5
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1281.5 1115 63.1
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1276.9 1105 59.8
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1272.3 1111 60.5
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1270.8 1061 61.5
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1269.2 1097 59.6
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1269.2 1073 59.9
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1262.7 1075 59.8
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1261.1 1117 62.4
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1260.0 1068 59.6
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1258.8 1070 59.6
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1256.1 1103 60.9
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1254.6 1085 59.3
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1249.6 911 69.9
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1231.9 1365 50.6
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1231.9 1068 60.5
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1221.1 1101 58.3
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1197.6 1079 58.2
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1187.6 988 61.2
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1186.0 1032 60.1
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1150.6 1095 54.9
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1142.9 1043 56.3
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1142.1 897 65.0
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1134.0 871 70.7
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 1.6e-307 1059.7 818 67.8
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 2.0e-307 1059.3 1097 53.1
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 3.8e-306 1055.0 1082 54.0
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 8.9e-295 1017.3 1043 53.5
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.8e-292 1009.6 680 74.6
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 2.4e-292 1009.2 1111 50.8
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 3.9e-282 975.3 1062 49.2
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 1.5e-270 936.8 1078 47.2
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 7.5e-270 934.5 784 62.5
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 6.6e-266 921.4 959 48.9
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 3.6e-248 862.4 639 71.8
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 3.9e-242 842.4 1045 44.3
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.2e-216 756.9 547 71.8
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.2e-216 756.9 547 71.8
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.8e-213 746.1 572 67.0
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 3.8e-205 719.5 1025 40.6
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 8.6e-157 558.9 393 73.5
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 1.5e-113 415.2 400 59.8
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 2.0e-57 228.8 622 28.3
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 1.0e-56 226.5 201 56.7
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 2.2e-51 208.8 165 64.2
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 1.2e-49 203.0 146 65.1
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 7.8e-49 200.3 194 52.1
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 2.1e-46 192.2 212 50.0
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 2.6e-44 185.3 172 55.8
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 2.5e-39 168.7 174 51.1
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 1.2e-38 166.4 621 24.0
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.3e-37 162.2 174 51.7
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 8.4e-35 153.7 392 29.6
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 4.4e-28 131.3 148 50.7
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 4.9e-27 127.9 121 54.5
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 6.4e-27 127.5 102 62.7
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 2.0e-20 105.9 272 33.5
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.9e-16 91.7 107 43.0
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 1.6e-14 86.3 244 27.0
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 4.0e-13 81.6 68 63.2
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 1.5e-12 79.7 70 60.0
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 4.2e-10 71.6 79 54.4
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 4.3e-07 61.6 50 44.0


User provided reference genes

Program Settings