Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0026125 Lotus japonicus HOM05D006240 ORTHO05D007709 7.6e-107 390.6 208 100.0
Glyma.19G151500 Glycine max HOM05D006240 ORTHO05D007709 8.0e-64 247.7 202 68.8
Ca_15403_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 5.7e-62 241.5 186 69.4
Ca_29886_v3 Cicer arietinum L. HOM05D006240 ORTHO05D007709 5.7e-62 241.5 186 69.4
Glyma.03G148200 Glycine max HOM05D006240 ORTHO05D007709 1.1e-60 237.3 202 67.3
VMungo1383G1920 Vigna mungo HOM05D006240 ORTHO05D007709 1.4e-60 236.9 207 65.2
Psat5g009800 Pisum sativum HOM05D006240 ORTHO05D007709 2.4e-60 236.1 196 64.8
Lalb_Chr11g0061501 Lupinus albus HOM05D006240 ORTHO05D007709 3.1e-60 235.7 202 64.4
Phvul.001G146200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 1.2e-59 233.8 206 64.1
TPR.G38126 Trifolium pratense HOM05D006240 ORTHO05D007709 2.3e-58 229.6 183 67.2
Medtr3g115650 Medicago truncatula HOM05D006240 ORTHO05D007709 6.1e-56 221.5 221 59.7
arahy.Tifrunner.gnm1.ann1.MR2FC0 Arachis hypogaea HOM05D006240 ORTHO05D007709 2.2e-45 186.4 215 53.5
Actinidia15507 Actinidia chinensis HOM05D006240 ORTHO05D007709 4.3e-41 172.2 191 49.2
Ciclev10002499m.g Citrus clementina HOM05D006240 ORTHO05D007709 5.2e-39 165.2 209 47.8
Manes.13G069200 Manihot esculenta HOM05D006240 ORTHO05D007709 2.6e-38 162.9 215 46.5
QL02p015120 Quercus lobata HOM05D006240 ORTHO05D007709 2.6e-38 162.9 213 49.8
Gorai.002G114700 Gossypium raimondii HOM05D006240 ORTHO05D007709 9.9e-38 161.0 202 49.0
CiPaw.08G075400 Carya illinoinensis HOM05D006240 ORTHO05D007709 3.7e-37 159.1 217 46.1
Gohir.D01G089000 Gossypium hirsutum HOM05D006240 ORTHO05D007709 4.9e-37 158.7 194 50.0
Actinidia17059 Actinidia chinensis HOM05D006240 ORTHO05D007709 8.3e-37 157.9 221 44.8
MBI05_g33294_MAGBIO Magnolia biondii HOM05D006240 ORTHO05D007709 1.1e-36 157.5 200 48.5
TAR628G0625 Trochodendron aralioides HOM05D006240 ORTHO05D007709 1.1e-36 157.5 221 44.8
CSS0005151 Camellia sinensis var. sinensis HOM05D006240 ORTHO05D007709 1.9e-36 156.8 194 49.0
THA.LOC104811476 Tarenaya hassleriana HOM05D006240 ORTHO05D007709 4.1e-36 155.6 190 48.9
TAR376G0245 Trochodendron aralioides HOM05D006240 ORTHO05D007709 4.1e-36 155.6 219 45.2
vmacro21788 Vaccinium macrocarpon HOM05D006240 ORTHO05D007709 4.1e-36 155.6 219 43.4
AUR62035138 Chenopodium quinoa HOM05D006240 ORTHO05D007709 9.2e-36 154.5 190 50.0
CsaV3_4G037430 Cucumis sativus L. HOM05D006240 ORTHO05D007709 9.2e-36 154.5 190 48.9
PSO210G3458 Papaver somniferum HOM05D006240 ORTHO05D007709 9.2e-36 154.5 200 47.0
Duzib041G0618 Durio zibethinus HOM05D006240 ORTHO05D007709 1.6e-35 153.7 214 46.3
Ah.00g001020 Amaranthus hybridus HOM05D006240 ORTHO05D007709 2.7e-35 152.9 214 43.5
FAN06G3720 Fragaria x ananassa HOM05D006240 ORTHO05D007709 2.7e-35 152.9 182 51.1
Rhsim06G0005200 Rhododendron simsii HOM05D006240 ORTHO05D007709 2.7e-35 152.9 209 45.5
Thecc.08G062400 Theobroma cacao HOM05D006240 ORTHO05D007709 2.7e-35 152.9 186 50.5
EL10Ac4g09545 Beta vulgaris HOM05D006240 ORTHO05D007709 4.6e-35 152.1 199 45.2
FvH4_7g11300 Fragaria vesca HOM05D006240 ORTHO05D007709 4.6e-35 152.1 182 50.5
Atru.chr9.2231 Acer truncatum HOM05D006240 ORTHO05D007709 6.0e-35 151.8 187 49.2
GSVIVG01013393001 Vitis vinifera HOM05D006240 ORTHO05D007709 1.0e-34 151.0 213 45.1
MELO3C017040.2 Cucumis melo HOM05D006240 ORTHO05D007709 1.3e-34 150.6 190 48.9
COL.COLO4_07215 Corchorus olitorius HOM05D006240 ORTHO05D007709 1.7e-34 150.2 183 49.7
FAN03G2060 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.7e-34 150.2 182 50.0
FAN10G2738 Fragaria x ananassa HOM05D006240 ORTHO05D007709 1.7e-34 150.2 182 50.0
RcHm_v2.0_Chr1g0349471 Rosa chinensis HOM05D006240 ORTHO05D007709 1.7e-34 150.2 185 49.7
Sed0018366 Sechium edule HOM05D006240 ORTHO05D007709 1.7e-34 150.2 225 41.8
Carub.0001s2022 Capsella rubella HOM05D006240 ORTHO05D007709 2.3e-34 149.8 210 44.8
AL1G33760 Arabidopsis lyrata HOM05D006240 ORTHO05D007709 3.0e-34 149.4 183 47.5
CARHR021210 Cardamine hirsuta HOM05D006240 ORTHO05D007709 3.0e-34 149.4 213 44.1
Thhalv10008759m.g Eutrema salsugineum HOM05D006240 ORTHO05D007709 3.0e-34 149.4 211 44.1
Nn4g24539 Nelumbo nucifera HOM05D006240 ORTHO05D007709 3.0e-34 149.4 196 45.9
A07p15490 Brassica napus HOM05D006240 ORTHO05D007709 3.9e-34 149.1 191 47.6
Hma1.2p1_0612F.1_g188890 Hydrangea macrophylla HOM05D006240 ORTHO05D007709 3.9e-34 149.1 221 44.3
Potri.005G253101 Populus trichocarpa HOM05D006240 ORTHO05D007709 3.9e-34 149.1 198 47.5
MSTRG.24503 Avicennia marina HOM05D006240 ORTHO05D007709 5.1e-34 148.7 191 47.1
unitig_578.g16237 Utricularia gibba HOM05D006240 ORTHO05D007709 5.1e-34 148.7 189 45.0
Dinv31964 Davidia involucrata HOM05D006240 ORTHO05D007709 6.6e-34 148.3 219 43.8
Sp1g18470 Schrenkiella parvula HOM05D006240 ORTHO05D007709 6.6e-34 148.3 187 46.0
AT1G20770 Arabidopsis thaliana HOM05D006240 ORTHO05D007709 8.6e-34 147.9 183 47.5
FAN01G0923 Fragaria x ananassa HOM05D006240 ORTHO05D007709 8.6e-34 147.9 211 46.4
BraA07t29290Z Brassica rapa HOM05D006240 ORTHO05D007709 1.1e-33 147.5 191 47.6
CDE04G0018 Ceratophyllum demersum HOM05D006240 ORTHO05D007709 1.1e-33 147.5 194 45.4
Phvul.009G075200 Phaseolus vulgaris HOM05D006240 ORTHO05D007709 1.5e-33 147.1 129 62.0
Aa31LG7G4930 Aethionema arabicum HOM05D006240 ORTHO05D007709 3.3e-33 146.0 200 45.0
BcaB03g14301 Brassica carinata HOM05D006240 ORTHO05D007709 3.3e-33 146.0 187 47.6
CANSAT56G3734 Cannabis sativa HOM05D006240 ORTHO05D007709 3.3e-33 146.0 202 44.6
BcaC06g34834 Brassica carinata HOM05D006240 ORTHO05D007709 4.3e-33 145.6 220 42.7
C07p22820 Brassica napus HOM05D006240 ORTHO05D007709 4.3e-33 145.6 220 42.7
Migut.M00585 Erythranthe guttata HOM05D006240 ORTHO05D007709 4.3e-33 145.6 197 44.2
Nn5g31000 Nelumbo nucifera HOM05D006240 ORTHO05D007709 4.3e-33 145.6 228 43.0
RcHm_v2.0_Chr7g0215611 Rosa chinensis HOM05D006240 ORTHO05D007709 4.3e-33 145.6 185 48.6
BolC7t42820H Brassica oleracea HOM05D006240 ORTHO05D007709 9.5e-33 144.4 222 42.3
Sabra05G0196300 Salix brachista HOM05D006240 ORTHO05D007709 1.2e-32 144.1 215 46.5
TWI36G0187 Tripterygium wilfordii HOM05D006240 ORTHO05D007709 1.6e-32 143.7 210 42.4
Aqoxy5G00997 Aquilegia oxysepala HOM05D006240 ORTHO05D007709 2.1e-32 143.3 203 43.8
BcaB03g12855 Brassica carinata HOM05D006240 ORTHO05D007709 2.1e-32 143.3 212 43.4
A08p29270 Brassica napus HOM05D006240 ORTHO05D007709 2.8e-32 142.9 215 42.8
Migut.M00223 Erythranthe guttata HOM05D006240 ORTHO05D007709 2.8e-32 142.9 190 44.7
ClCG11G018840 Citrullus lanatus HOM05D006240 ORTHO05D007709 3.6e-32 142.5 266 40.6
Nitab4.5_0006318g0100 Nicotiana tabacum HOM05D006240 ORTHO05D007709 3.6e-32 142.5 194 45.4
PGSC0003DMG400001324 Solanum tuberosum HOM05D006240 ORTHO05D007709 3.6e-32 142.5 212 42.9
SGA_v2.0_scaffold54G19646 Striga asiatica HOM05D006240 ORTHO05D007709 3.6e-32 142.5 192 46.4
AUR62042908 Chenopodium quinoa HOM05D006240 ORTHO05D007709 4.7e-32 142.1 215 44.2
PGR031G1135 Punica granatum HOM05D006240 ORTHO05D007709 4.7e-32 142.1 191 44.0
PSO170G2591 Papaver somniferum HOM05D006240 ORTHO05D007709 6.2e-32 141.7 189 45.0
BraA08t34862Z Brassica rapa HOM05D006240 ORTHO05D007709 8.1e-32 141.4 206 42.7
Sopen02g032680 Solanum pennellii HOM05D006240 ORTHO05D007709 1.1e-31 141.0 194 43.3
MD07G1117600 Malus domestica HOM05D006240 ORTHO05D007709 2.4e-31 139.8 183 45.9
arahy.Tifrunner.gnm1.ann1.W2HKS7 Arachis hypogaea HOM05D006240 ORTHO05D007709 4.0e-31 139.0 167 50.3
Haze_22830 Corylus avellana HOM05D006240 ORTHO05D007709 5.2e-31 138.7 166 51.2
Lsat_1_v5_gn_2_1920 Lactuca sativa HOM05D006240 ORTHO05D007709 5.2e-31 138.7 187 47.1
Nitab4.5_0000564g0070 Nicotiana tabacum HOM05D006240 ORTHO05D007709 8.9e-31 137.9 210 43.8
Prupe.2G140800 Prunus persica HOM05D006240 ORTHO05D007709 8.9e-31 137.9 180 44.4
SalBow6G2548 Salvia bowleyana HOM05D006240 ORTHO05D007709 8.9e-31 137.9 198 42.9
C08p20350 Brassica napus HOM05D006240 ORTHO05D007709 2.0e-30 136.7 203 42.9
ECA232G5059 Erigeron canadensis HOM05D006240 ORTHO05D007709 4.4e-30 135.6 232 39.2
HanXRQChr16g0516421 Helianthus annuus HOM05D006240 ORTHO05D007709 4.4e-30 135.6 209 41.6
Migut.N02969 Erythranthe guttata HOM05D006240 ORTHO05D007709 7.6e-30 134.8 195 43.6
Sc15g0004230 Simmondsia chinensis HOM05D006240 ORTHO05D007709 7.6e-30 134.8 164 47.6
BolC8t49663H Brassica oleracea HOM05D006240 ORTHO05D007709 9.9e-30 134.4 209 41.6
Peaxi162Scf00129g00239 Petunia axillaris HOM05D006240 ORTHO05D007709 9.9e-30 134.4 204 42.2
CAN.G206.149 Capsicum annuum HOM05D006240 ORTHO05D007709 1.3e-29 134.0 204 41.2
DCAR_020858 Daucus carota HOM05D001217 ORTHO05D007709 1.3e-29 134.0 219 38.8
Gohir.A01G103700 Gossypium hirsutum HOM05D006240 ORTHO05D007709 1.3e-29 134.0 170 50.0
Cfa014112 Carpinus fangiana HOM05D006240 ORTHO05D007709 3.8e-29 132.5 166 49.4
Lj4C7G6 Lonicera japonica HOM05D006240 ORTHO05D007709 4.9e-29 132.1 216 42.1
BcaC07g39051 Brassica carinata HOM05D006240 ORTHO05D007709 6.4e-29 131.7 202 41.6
Cc04_g09300 Coffea canephora HOM05D006240 ORTHO05D007709 6.4e-29 131.7 234 39.7
MD02G1098700 Malus domestica HOM05D006240 ORTHO05D007709 1.4e-28 130.6 177 44.6
Os04g0509200 Oryza sativa ssp. japonica HOM05D006240 ORTHO05D007709 2.4e-28 129.8 223 40.8
Hund05091 Selenicereus undatus HOM05D006240 ORTHO05D007709 2.7e-27 126.3 220 41.4
HPP92_012646 Vanilla planifolia HOM05D006240 ORTHO05D007709 1.7e-26 123.6 216 39.8
Eucgr.K03289 Eucalyptus grandis HOM05D006240 ORTHO05D007709 3.9e-18 95.9 260 35.0
Solyc02g087940.4 Solanum lycopersicum HOM05D006240 ORTHO05D007709 6.2e-16 88.6 127 43.3
Atru.chr3.2559 Acer truncatum HOM05D006240 ORTHO05D007709 1.4e-15 87.4 201 36.8
Atru.chr9.2243 Acer truncatum HOM05D006240 ORTHO05D007709 4.0e-15 85.9 75 57.3
FAN10G3076 Fragaria x ananassa HOM05D006240 ORTHO05D007709 9.9e-14 81.3 116 45.7
Zm00001eb077760 Zea mays HOM05D006240 ORTHO05D007709 2.2e-13 80.1 118 44.9
SGA_v2.0_scaffold54G19644 Striga asiatica HOM05D006240 ORTHO05D007709 4.9e-13 79.0 282 29.1
Pp3c17_23460 Physcomitrium patens HOM05D006240 ORTHO05D007709 3.2e-12 76.3 197 31.0
ATR0807G014 Amborella trichopoda HOM05D006240 ORTHO05D007709 3.5e-11 72.8 99 47.5
Mapoly0189s0009 Marchantia polymorpha HOM05D006240 ORTHO05D007709 3.9e-10 69.3 213 31.0
TPR.G38169 Trifolium pratense HOM05D006240 ORTHO05D007709 5.1e-10 68.9 114 43.0
Atru.chr9.2228 Acer truncatum HOM05D000343 ORTHO05D000975 1.4e-07 60.8 48 60.4
SEGI_13318 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 1.4e-07 60.8 87 42.5
SEGI_19917 Sequoiadendron giganteum HOM05D006240 ORTHO05D007709 2.6e-06 56.6 114 32.5


User provided reference genes

Program Settings