Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 9.7e-244 846.3 396 100.0
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 1.7e-195 686.0 480 73.8
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 3.3e-183 645.2 419 78.3
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 2.4e-170 602.4 327 88.1
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 2.4e-170 602.4 327 88.1
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 1.5e-167 593.2 468 64.7
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 1.8e-165 586.3 427 68.4
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 1.7e-163 579.7 426 67.6
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 7.1e-162 574.3 426 67.8
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 9.3e-162 573.9 426 66.9
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 1.2e-161 573.5 426 67.6
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 1.8e-160 569.7 327 85.6
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 3.9e-160 568.5 426 66.7
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 2.5e-159 565.8 451 64.5
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 2.4e-157 559.3 429 66.0
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 6.9e-157 557.8 429 66.0
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 5.8e-156 554.7 431 63.1
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 3.8e-155 552.0 426 63.6
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 1.4e-154 550.1 498 57.4
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 1.4e-154 550.1 426 63.1
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 9.3e-154 547.4 426 62.9
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 1.6e-153 546.6 431 62.2
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 1.6e-153 546.6 479 57.8
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 1.8e-152 543.1 430 62.8
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 9.6e-151 537.3 426 62.2
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 2.8e-150 535.8 431 62.4
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 3.7e-150 535.4 431 61.3
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 3.7e-150 535.4 431 61.3
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 8.2e-150 534.3 431 61.3
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 8.2e-150 534.3 431 61.3
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 8.2e-150 534.3 443 61.4
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.1e-149 533.9 431 61.3
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 1.4e-149 533.5 426 61.3
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 1.8e-149 533.1 419 62.5
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 3.1e-149 532.3 431 61.3
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 5.3e-149 531.6 426 61.0
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 5.3e-149 531.6 426 61.5
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 2.0e-148 529.6 426 61.5
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 3.4e-148 528.9 426 62.0
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 3.8e-147 525.4 426 61.3
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 6.5e-147 524.6 426 61.5
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 1.1e-146 523.9 430 61.2
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 1.4e-146 523.5 436 60.1
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 2.5e-146 522.7 431 60.1
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 3.2e-146 522.3 435 60.5
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 7.1e-146 521.2 435 59.1
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 1.2e-145 520.4 484 55.4
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 2.1e-145 519.6 431 59.4
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.7e-145 519.2 431 60.3
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 2.7e-145 519.2 431 60.3
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 6.0e-145 518.1 426 60.3
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 6.0e-145 518.1 460 58.0
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 1.3e-144 516.9 435 59.1
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 1.8e-144 516.5 426 60.8
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 2.3e-144 516.2 433 59.4
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 5.1e-144 515.0 431 59.9
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 6.7e-144 514.6 427 59.5
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 6.7e-144 514.6 436 58.3
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 8.7e-144 514.2 466 55.6
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 1.5e-143 513.5 426 59.4
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 2.5e-143 512.7 435 57.9
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 2.5e-143 512.7 453 57.2
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 3.3e-143 512.3 431 59.4
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 3.3e-143 512.3 407 62.9
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 4.3e-143 511.9 435 57.7
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 4.3e-143 511.9 426 59.9
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 9.7e-143 510.8 383 64.8
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 1.3e-142 510.4 465 55.5
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 2.2e-142 509.6 457 55.8
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 2.2e-142 509.6 430 58.4
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 2.8e-142 509.2 436 58.3
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 2.8e-142 509.2 436 58.3
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 3.7e-142 508.8 433 58.4
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 4.8e-142 508.4 445 58.4
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 1.1e-141 507.3 458 56.8
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 1.4e-141 506.9 428 59.8
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 2.4e-141 506.1 431 58.9
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 2.4e-141 506.1 431 57.5
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 4.1e-141 505.4 457 55.6
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 5.3e-141 505.0 434 59.0
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 3.4e-140 502.3 431 57.3
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 4.5e-140 501.9 463 56.8
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 5.9e-140 501.5 435 57.2
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 7.7e-140 501.1 437 57.9
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 1.7e-139 500.0 432 58.3
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 5.0e-139 498.4 426 58.5
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 6.5e-139 498.0 461 56.6
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 1.4e-138 496.9 431 57.1
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 1.4e-138 496.9 404 60.4
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 9.4e-138 494.2 436 57.3
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 2.1e-137 493.0 327 70.3
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 7.9e-137 491.1 456 55.7
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 1.8e-136 490.0 436 57.1
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 6.7e-136 488.0 436 56.9
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 3.3e-135 485.7 430 57.4
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 5.7e-135 485.0 423 57.2
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 8.2e-134 481.1 426 55.9
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 5.9e-132 474.9 426 55.4
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 5.9e-132 474.9 327 68.2
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 1.4e-130 470.3 431 55.9
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 9.4e-130 467.6 520 47.9
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 2.7e-129 466.1 433 54.3
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.1e-125 452.2 431 51.3
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 2.2e-123 446.4 372 59.7
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 1.6e-121 440.3 468 50.0
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 1.1e-119 434.1 390 56.7
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 3.1e-117 426.0 392 56.4
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 1.6e-116 423.7 367 58.3
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 1.1e-114 417.5 323 61.3
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 6.7e-112 408.3 407 50.6
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 4.8e-110 402.1 352 57.7
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 2.7e-108 396.4 435 47.1
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 2.2e-107 393.3 434 47.7
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 4.2e-106 389.0 354 57.1
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 1.0e-104 384.4 520 43.8
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 9.8e-103 377.9 271 66.1
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 2.4e-101 373.2 426 45.8
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 3.8e-99 365.9 398 47.0
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 9.5e-90 334.7 422 45.3
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.5e-82 310.8 253 60.1
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 4.7e-73 279.3 220 61.4
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 1.2e-63 248.1 458 33.2
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 8.4e-54 215.3 110 83.6
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.2e-53 213.4 186 58.6
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 2.8e-49 200.3 401 35.9
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 8.1e-49 198.7 109 79.8
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 7.1e-45 185.7 279 40.5
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.0e-43 181.8 148 58.8
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.8e-43 181.0 110 72.7
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 1.3e-41 174.9 112 69.6
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.8e-41 172.9 110 70.9
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 3.2e-29 133.7 109 53.2
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 3.0e-19 100.5 127 46.5
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 4.3e-18 96.7 60 66.7
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 9.7e-18 95.5 61 65.6
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.1e-16 92.0 130 42.3
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 5.3e-16 89.7 148 38.5
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 2.2e-09 67.8 56 57.1


User provided reference genes

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