Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0026070 Lotus japonicus HOM05D005844 ORTHO05D007203 6.7e-143 510.8 275 100.0
Medtr7g033530 Medicago truncatula HOM05D005844 ORTHO05D007203 2.2e-114 416.0 242 83.1
Phvul.004G044500 Phaseolus vulgaris HOM05D005844 ORTHO05D007203 3.8e-114 415.2 247 83.4
Medtr2g062880 Medicago truncatula HOM05D005844 ORTHO05D007203 8.5e-114 414.1 238 84.9
Lalb_Chr08g0243241 Lupinus albus HOM05D005844 ORTHO05D007203 6.8e-111 404.4 247 81.8
VMungo0464G1123 Vigna mungo HOM05D005844 ORTHO05D007203 7.5e-110 401.0 247 80.6
CSS0012729 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 5.0e-106 388.3 246 74.4
Psat4g044480 Pisum sativum HOM05D005844 ORTHO05D007203 1.9e-105 386.3 273 72.5
CiPaw.03G045000 Carya illinoinensis HOM05D005844 ORTHO05D007203 1.6e-104 383.3 247 74.9
Ca_08532_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 6.1e-104 381.3 247 78.1
Ciclev10016139m.g Citrus clementina HOM05D005844 ORTHO05D007203 8.0e-104 380.9 236 76.7
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.0e-103 380.6 221 81.4
Dinv33434 Davidia involucrata HOM05D005844 ORTHO05D007203 1.4e-103 380.2 240 75.8
Dinv09631 Davidia involucrata HOM05D005844 ORTHO05D007203 1.8e-103 379.8 240 75.8
Cpa.g.c26638.3 Carica papaya HOM05D005844 ORTHO05D007203 3.4e-102 375.6 240 73.8
Cfa007347 Carpinus fangiana HOM05D005844 ORTHO05D007203 7.5e-102 374.4 239 75.7
Actinidia05987 Actinidia chinensis HOM05D005844 ORTHO05D007203 1.4e-100 370.2 234 75.2
TWI56G0011 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 1.4e-100 370.2 234 76.1
Actinidia36121 Actinidia chinensis HOM05D005844 ORTHO05D007203 1.8e-100 369.8 234 73.9
QL02p074142 Quercus lobata HOM05D005844 ORTHO05D007203 2.4e-100 369.4 230 73.9
RcHm_v2.0_Chr2g0173161 Rosa chinensis HOM05D005844 ORTHO05D007203 2.4e-100 369.4 248 71.4
ECA247G4055 Erigeron canadensis HOM05D005844 ORTHO05D007203 4.1e-100 368.6 246 69.9
Thecc.04G018700 Theobroma cacao HOM05D005844 ORTHO05D007203 4.1e-100 368.6 225 76.4
Duzib187G1685 Durio zibethinus HOM05D005844 ORTHO05D007203 7.0e-100 367.9 243 72.0
Glyma.19G056800 Glycine max HOM05D005844 ORTHO05D007203 7.0e-100 367.9 235 75.7
Aqoxy5G03753 Aquilegia oxysepala HOM05D005844 ORTHO05D007203 1.2e-99 367.1 239 72.4
THA.LOC104823955 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 7.8e-99 364.4 234 74.4
Potri.001G344000 Populus trichocarpa HOM05D005844 ORTHO05D007203 1.0e-98 364.0 244 71.7
FAN05G4937 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.7e-98 363.2 240 71.7
Gohir.D04G058000 Gossypium hirsutum HOM05D005844 ORTHO05D007203 2.3e-98 362.8 236 72.0
Gorai.012G064700 Gossypium raimondii HOM05D005844 ORTHO05D007203 2.3e-98 362.8 234 72.6
Hma1.2p1_2550F.1_g324230 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 2.3e-98 362.8 247 71.3
HanXRQChr02g0043121 Helianthus annuus HOM05D005844 ORTHO05D007203 3.9e-98 362.1 246 69.5
TWI36G0829 Tripterygium wilfordii HOM05D005844 ORTHO05D007203 3.9e-98 362.1 233 73.8
Rhsim10G0015300 Rhododendron simsii HOM05D005844 ORTHO05D007203 5.0e-98 361.7 227 74.9
Rhsim10G0016000 Rhododendron simsii HOM05D005844 ORTHO05D007203 5.0e-98 361.7 227 74.9
vmacro05871 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 5.0e-98 361.7 237 72.6
Glyma.16G069400 Glycine max HOM05D005844 ORTHO05D007203 6.6e-98 361.3 227 78.0
Nn4g22606 Nelumbo nucifera HOM05D005844 ORTHO05D007203 6.6e-98 361.3 229 73.4
Gohir.A05G355200 Gossypium hirsutum HOM05D005844 ORTHO05D007203 1.1e-97 360.5 236 71.6
PGR142G0612 Punica granatum HOM05D005844 ORTHO05D007203 1.1e-97 360.5 246 72.8
THA.LOC104805364 Tarenaya hassleriana HOM05D005844 ORTHO05D007203 1.1e-97 360.5 235 72.8
Nitab4.5_0003318g0030 Nicotiana tabacum HOM05D005844 ORTHO05D007203 4.3e-97 358.6 243 72.0
SalBow7G1242 Salvia bowleyana HOM05D005844 ORTHO05D007203 7.3e-97 357.8 241 73.4
Eucgr.I01735 Eucalyptus grandis HOM05D005844 ORTHO05D007203 1.2e-96 357.1 239 72.4
Cc07_g01570 Coffea canephora HOM05D005844 ORTHO05D007203 2.1e-96 356.3 245 70.2
Dinv07356 Davidia involucrata HOM05D005844 ORTHO05D007203 2.1e-96 356.3 250 70.0
CANSAT64G0956 Cannabis sativa HOM05D005844 ORTHO05D007203 2.8e-96 355.9 249 69.1
FAN14G2428 Fragaria x ananassa HOM05D005844 ORTHO05D007203 2.8e-96 355.9 240 70.8
GSVIVG01032391001 Vitis vinifera HOM05D005844 ORTHO05D007203 2.8e-96 355.9 221 75.1
ClCG09G019300 Citrullus lanatus HOM05D005844 ORTHO05D007203 8.0e-96 354.4 247 69.6
Os02g0593900 Oryza sativa ssp. japonica HOM05D005844 ORTHO05D007203 1.4e-95 353.6 240 69.6
MD17G1023500 Malus domestica HOM05D005844 ORTHO05D007203 1.8e-95 353.2 243 70.0
COL.COLO4_29165 Corchorus olitorius HOM05D005844 ORTHO05D007203 2.3e-95 352.8 221 74.2
unitig_46.g18705 Utricularia gibba HOM05D005844 ORTHO05D007203 3.1e-95 352.4 242 70.2
Migut.K01404 Erythranthe guttata HOM05D005844 ORTHO05D007203 4.0e-95 352.1 234 73.1
FAN09G1449 Fragaria x ananassa HOM05D005844 ORTHO05D007203 4.0e-95 352.1 240 70.0
CsaV3_5G027090 Cucumis sativus L. HOM05D005844 ORTHO05D007203 5.2e-95 351.7 247 68.4
BcaB06g27527 Brassica carinata HOM05D005844 ORTHO05D007203 6.8e-95 351.3 234 73.1
MSTRG.3288 Avicennia marina HOM05D005844 ORTHO05D007203 8.9e-95 350.9 246 69.5
Aa31LG9G1090 Aethionema arabicum HOM05D005844 ORTHO05D007203 1.2e-94 350.5 232 73.3
DCAR_021727 Daucus carota HOM05D005844 ORTHO05D007203 1.2e-94 350.5 220 73.6
FvH4_6g51630 Fragaria vesca HOM05D005844 ORTHO05D007203 1.2e-94 350.5 240 70.0
Sabra16G0223300 Salix brachista HOM05D005844 ORTHO05D007203 1.2e-94 350.5 260 68.1
A04p13570 Brassica napus HOM05D005844 ORTHO05D007203 1.5e-94 350.1 233 73.0
Solyc02g093390.4 Solanum lycopersicum HOM05D005844 ORTHO05D007203 1.5e-94 350.1 233 71.2
Sc16g0003190 Simmondsia chinensis HOM05D005844 ORTHO05D007203 2.0e-94 349.7 220 74.1
Ca_25854_v3 Cicer arietinum L. HOM05D005844 ORTHO05D007203 4.4e-94 348.6 221 79.6
PGSC0003DMG400012605 Solanum tuberosum HOM05D005844 ORTHO05D007203 5.8e-94 348.2 233 70.8
Zm00001eb205620 Zea mays HOM05D005844 ORTHO05D007203 5.8e-94 348.2 239 67.4
BcaB02g07945 Brassica carinata HOM05D005844 ORTHO05D007203 9.8e-94 347.4 234 73.1
C04p47350 Brassica napus HOM05D005844 ORTHO05D007203 1.3e-93 347.1 233 72.5
CSS0002651 Camellia sinensis var. sinensis HOM05D005844 ORTHO05D007203 1.3e-93 347.1 246 68.7
FAN02G1237 Fragaria x ananassa HOM05D005844 ORTHO05D007203 1.3e-93 347.1 240 69.2
VMungo1215G2157 Vigna mungo HOM05D005844 ORTHO05D007203 2.2e-93 346.3 220 76.8
Sp7g01340 Schrenkiella parvula HOM05D005844 ORTHO05D007203 4.9e-93 345.1 242 68.6
AT5G40530 Arabidopsis thaliana HOM05D005844 ORTHO05D007203 1.1e-92 344.0 233 72.5
ATR0824G194 Amborella trichopoda HOM05D005844 ORTHO05D007203 1.4e-92 343.6 239 67.4
arahy.Tifrunner.gnm1.ann1.V6CENM Arachis hypogaea HOM05D005844 ORTHO05D007203 2.4e-92 342.8 243 70.0
Thhalv10027875m.g Eutrema salsugineum HOM05D005844 ORTHO05D007203 3.2e-92 342.4 234 70.9
Sopen02g037980 Solanum pennellii HOM05D005844 ORTHO05D007203 4.1e-92 342.0 233 69.5
Carub.0007s3499 Capsella rubella HOM05D005844 ORTHO05D007203 5.4e-92 341.7 234 71.4
Prupe.3G293000 Prunus persica HOM05D005844 ORTHO05D007203 5.4e-92 341.7 239 68.6
AL7G49290 Arabidopsis lyrata HOM05D005844 ORTHO05D007203 2.7e-91 339.3 233 71.7
Haze_14753 Corylus avellana HOM05D005844 ORTHO05D007203 2.7e-91 339.3 269 63.6
Nitab4.5_0001860g0130 Nicotiana tabacum HOM05D005844 ORTHO05D007203 2.7e-91 339.3 234 72.2
SGA_v2.0_scaffold18G08274 Striga asiatica HOM05D005844 ORTHO05D007203 6.0e-91 338.2 262 64.5
Cfa007344 Carpinus fangiana HOM05D005844 ORTHO05D007203 1.0e-90 337.4 252 67.9
Manes.15G150500 Manihot esculenta HOM05D005844 ORTHO05D007203 1.0e-90 337.4 238 70.6
PSO407G0181 Papaver somniferum HOM05D005844 ORTHO05D007203 8.6e-90 334.3 230 67.8
PSO111G0092 Papaver somniferum HOM05D005844 ORTHO05D007203 3.3e-89 332.4 248 64.1
MELO3C021585.2 Cucumis melo HOM05D005844 ORTHO05D007203 4.0e-87 325.5 246 64.2
HPP92_020245 Vanilla planifolia HOM05D005844 ORTHO05D007203 1.3e-85 320.5 244 61.5
Sed0014974 Sechium edule HOM05D005844 ORTHO05D007203 2.5e-81 306.2 206 70.4
SMO169G0126 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 2.8e-80 302.8 221 67.0
BolC4t26336H Brassica oleracea HOM05D005844 ORTHO05D007203 8.9e-79 297.7 214 67.8
BraA04t17017Z Brassica rapa HOM05D005844 ORTHO05D007203 8.9e-79 297.7 214 67.8
CDE09G0856 Ceratophyllum demersum HOM05D005844 ORTHO05D007203 8.9e-79 297.7 201 68.2
AagrBONN_evm.TU.Sc2ySwM_344.1282 Anthoceros agrestis HOM05D005844 ORTHO05D007203 1.5e-78 297.0 230 62.6
Pp3c18_8570 Physcomitrium patens HOM05D005844 ORTHO05D007203 5.8e-78 295.0 229 61.1
MBI06_g16054_MAGBIO Magnolia biondii HOM05D005844 ORTHO05D007203 9.9e-78 294.3 240 58.8
TAR629G2614 Trochodendron aralioides HOM05D005844 ORTHO05D007203 1.3e-77 293.9 183 74.3
Lj7A600G48 Lonicera japonica HOM05D005844 ORTHO05D007203 2.2e-77 293.1 182 76.4
PSO754G0028 Papaver somniferum HOM05D005844 ORTHO05D007203 1.9e-76 290.0 249 56.2
Mapoly0055s0119 Marchantia polymorpha HOM05D005844 ORTHO05D007203 5.4e-76 288.5 248 57.3
CBR_g37477 Chara braunii HOM05D005844 ORTHO05D007203 7.8e-75 284.6 229 60.3
EL10Ac6g14092 Beta vulgaris HOM05D005844 ORTHO05D007203 4.3e-73 278.9 248 58.9
Peaxi162Scf00129g01647 Petunia axillaris HOM05D005844 ORTHO05D007203 4.0e-71 272.3 183 71.0
Hma1.2p1_1747F.1_g300470 Hydrangea macrophylla HOM05D005844 ORTHO05D007203 4.4e-70 268.9 183 68.9
Lsat_1_v5_gn_1_11001 Lactuca sativa HOM05D005844 ORTHO05D007203 2.9e-69 266.2 174 71.8
CARHR261450 Cardamine hirsuta HOM05D005844 ORTHO05D007203 7.1e-68 261.5 179 71.5
Cfa007349 Carpinus fangiana HOM05D005844 ORTHO05D007203 6.6e-66 255.0 246 57.7
CAN.G473.16 Capsicum annuum HOM05D005844 ORTHO05D007203 9.0e-63 244.6 163 71.8
Ah.03g137020 Amaranthus hybridus HOM05D001812 ORTHO05D001874 5.4e-60 235.3 193 62.2
MCO16G365 Micromonas commoda HOM05D005844 ORTHO05D007203 1.6e-59 233.8 232 53.0
TPR.G1078 Trifolium pratense HOM05D005844 ORTHO05D007203 1.9e-57 226.9 130 83.8
TPR.G11046 Trifolium pratense HOM05D005844 ORTHO05D007203 1.1e-55 221.1 123 84.6
Cre07.g323450 Chlamydomonas reinhardtii HOM05D005844 ORTHO05D007203 7.9e-51 204.9 265 43.4
TPR.G35964 Trifolium pratense HOM05D005844 ORTHO05D007203 1.1e-47 194.5 112 85.7
SHI16461 Sapria himalayana HOM05D005844 ORTHO05D007203 2.2e-45 186.8 308 36.4
Atru.chr6.2417 Acer truncatum HOM05D005844 ORTHO05D007203 4.2e-44 182.6 123 74.0
PRCOL_00001214 Prasinoderma coloniale HOM05D005844 ORTHO05D007203 1.6e-43 180.6 288 38.2
vmacro09039 Vaccinium macrocarpon HOM05D005844 ORTHO05D007203 5.7e-41 172.2 192 48.4
TAR629G1250 Trochodendron aralioides HOM05D005844 ORTHO05D007203 2.2e-37 160.2 141 58.2
SMO202G0011 Selaginella moellendorffii HOM05D005844 ORTHO05D007203 4.5e-30 136.0 116 57.8
BolC4t27198H Brassica oleracea HOM05D005844 ORTHO05D007203 8.5e-29 131.7 130 56.9
Atru.chr2.3681 Acer truncatum HOM05D005844 ORTHO05D007203 9.4e-28 128.3 77 81.8
Cfa024741 Carpinus fangiana HOM05D005844 ORTHO05D007203 2.7e-27 126.7 193 36.8
Rhsim10G0015100 Rhododendron simsii HOM05D014363 ORTHO05D019497 8.8e-26 121.7 77 77.9
SEGI_32629 Sequoiadendron giganteum HOM05D005844 ORTHO05D007203 2.8e-24 116.7 81 69.1
QL12p001810 Quercus lobata HOM05D005844 ORTHO05D007203 6.3e-24 115.5 84 63.1
AUR62043289 Chenopodium quinoa HOM05D005844 ORTHO05D007203 2.6e-17 93.6 76 63.2
CARHR261460 Cardamine hirsuta HOM05D005844 ORTHO05D007203 1.5e-12 77.8 56 62.5
SHI16462 Sapria himalayana HOM05D005844 ORTHO05D007203 3.2e-12 76.6 77 51.9


User provided reference genes

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