Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0026047 Lotus japonicus HOM05D008625 ORTHO05D010623 8.8e-96 353.6 176 100.0
Medtr3g109900 Medicago truncatula HOM05D008625 ORTHO05D010623 3.1e-48 195.7 191 56.5
TPR.G15108 Trifolium pratense HOM05D008625 ORTHO05D010623 1.2e-47 193.7 180 61.7
Medtr3g109920 Medicago truncatula HOM05D008625 ORTHO05D010623 4.4e-47 191.8 187 59.4
Psat5g020440 Pisum sativum HOM05D008625 ORTHO05D010623 3.7e-46 188.7 190 57.9
VMungo1309G2682 Vigna mungo HOM05D008625 ORTHO05D010623 2.0e-44 183.0 190 55.3
Psat5g020400 Pisum sativum HOM05D008625 ORTHO05D010623 6.0e-44 181.4 185 55.7
Glyma.04G085800 Glycine max HOM05D008625 ORTHO05D010623 7.8e-44 181.0 203 53.2
Glyma.06G087400 Glycine max HOM05D008625 ORTHO05D010623 2.3e-43 179.5 187 55.1
arahy.Tifrunner.gnm1.ann1.66V3J9 Arachis hypogaea HOM05D008625 ORTHO05D010623 1.5e-42 176.8 212 53.8
Phvul.009G111200 Phaseolus vulgaris HOM05D008625 ORTHO05D010623 2.3e-40 169.5 192 53.6
Lalb_Chr08g0242961 Lupinus albus HOM05D008625 ORTHO05D010623 1.2e-39 167.2 207 50.2
Ca_15580_v3 Cicer arietinum L. HOM05D008625 ORTHO05D010623 2.7e-36 156.0 126 63.5
Thecc.09G047000 Theobroma cacao HOM05D001131 ORTHO05D010623 2.7e-20 102.8 175 41.7
Cpa.g.sc7.202 Carica papaya HOM05D008625 ORTHO05D010623 1.6e-17 93.6 165 38.8
MD08G1111800 Malus domestica HOM05D008625 ORTHO05D010623 2.8e-17 92.8 186 34.4
Ciclev10009617m.g Citrus clementina HOM05D001131 ORTHO05D000972 4.8e-17 92.0 179 38.5
MD15G1091300 Malus domestica HOM05D001131 ORTHO05D010623 6.2e-17 91.7 186 32.3
Prupe.1G446200 Prunus persica HOM05D001131 ORTHO05D010623 1.8e-16 90.1 195 34.9
TAR624G0151 Trochodendron aralioides HOM05D001131 ORTHO05D000972 3.1e-16 89.4 182 35.2
Gohir.A06G092000 Gossypium hirsutum HOM05D001131 ORTHO05D010623 1.5e-15 87.0 182 38.5
Potri.006G236700 Populus trichocarpa HOM05D001131 ORTHO05D000972 2.0e-15 86.7 190 35.3
Gorai.010G105500 Gossypium raimondii HOM05D001131 ORTHO05D010623 4.5e-15 85.5 182 37.9
Sabra18G0045000 Salix brachista HOM05D001131 ORTHO05D000972 4.5e-15 85.5 169 37.3
Gohir.D06G091500 Gossypium hirsutum HOM05D001131 ORTHO05D010623 5.8e-15 85.1 182 37.9
Sabra06G0185000 Salix brachista HOM05D001131 ORTHO05D000972 1.3e-14 84.0 191 35.6
TWI63G1453 Tripterygium wilfordii HOM05D001131 ORTHO05D000972 1.3e-14 84.0 189 36.5
GSVIVG01035287001 Vitis vinifera HOM05D001131 ORTHO05D000972 1.3e-14 84.0 200 32.0
CSS0013249 Camellia sinensis var. sinensis HOM05D001131 ORTHO05D000972 2.2e-14 83.2 171 34.5
FAN20G1640 Fragaria x ananassa HOM05D008625 ORTHO05D010623 8.4e-14 81.3 171 35.1
CARHR240860 Cardamine hirsuta HOM05D008625 ORTHO05D010623 1.1e-13 80.9 181 34.3
Potri.018G046500 Populus trichocarpa HOM05D001131 ORTHO05D000972 1.1e-13 80.9 190 34.2
COL.COLO4_20990 Corchorus olitorius HOM05D001131 ORTHO05D010623 1.4e-13 80.5 187 38.0
Peaxi162Scf00665g00038 Petunia axillaris HOM05D001131 ORTHO05D000972 1.9e-13 80.1 199 32.2
Nn8g39098 Nelumbo nucifera HOM05D001131 ORTHO05D000972 2.4e-13 79.7 195 28.2
FvH4_2g35430 Fragaria vesca HOM05D008625 ORTHO05D010623 5.4e-13 78.6 173 34.1
FAN15G2009 Fragaria x ananassa HOM05D008625 ORTHO05D010623 5.4e-13 78.6 171 34.5
THA.LOC104803750 Tarenaya hassleriana HOM05D008625 ORTHO05D010623 7.1e-13 78.2 156 37.2
FAN27G2073 Fragaria x ananassa HOM05D008625 ORTHO05D010623 9.3e-13 77.8 173 34.1
Cc06_g10320 Coffea canephora HOM05D001131 ORTHO05D000972 1.6e-12 77.0 194 33.0
AL7G18860 Arabidopsis lyrata HOM05D008625 ORTHO05D010623 2.1e-12 76.6 186 32.8
BolC1t00594H Brassica oleracea HOM05D008625 ORTHO05D010623 2.1e-12 76.6 181 33.7
PGR142G2343 Punica granatum HOM05D001131 ORTHO05D000972 3.5e-12 75.9 186 31.7
RcHm_v2.0_Chr6g0306461 Rosa chinensis HOM05D008625 ORTHO05D010623 3.5e-12 75.9 168 35.1
BcaC09g52083 Brassica carinata HOM05D008625 ORTHO05D010623 4.6e-12 75.5 180 32.2
A01p05420 Brassica napus HOM05D008625 ORTHO05D010623 4.6e-12 75.5 181 33.1
C01p06020 Brassica napus HOM05D008625 ORTHO05D010623 4.6e-12 75.5 180 32.2
BraA01t00516Z Brassica rapa HOM05D008625 ORTHO05D010623 4.6e-12 75.5 181 33.1
Aa31sc706G10 Aethionema arabicum HOM05D008625 ORTHO05D010623 7.9e-12 74.7 197 32.0
CANSAT25G2493 Cannabis sativa HOM05D008625 ORTHO05D010623 7.9e-12 74.7 190 28.9
BcaNung06387 Brassica carinata HOM05D008625 ORTHO05D010623 1.3e-11 73.9 183 31.7
Hma1.2p1_0945F.1_g240300 Hydrangea macrophylla HOM05D001131 ORTHO05D000972 1.3e-11 73.9 182 30.2
QL02p042102 Quercus lobata HOM05D001131 ORTHO05D000972 1.3e-11 73.9 188 33.0
AT4G32860 Arabidopsis thaliana HOM05D008625 ORTHO05D010623 1.8e-11 73.6 189 31.2
A03p61610 Brassica napus HOM05D008625 ORTHO05D010623 1.8e-11 73.6 183 32.2
C07p59370 Brassica napus HOM05D008625 ORTHO05D010623 1.8e-11 73.6 183 31.7
BolC7t46381H Brassica oleracea HOM05D008625 ORTHO05D010623 1.8e-11 73.6 183 31.7
Duzib187G1193 Durio zibethinus HOM05D001131 ORTHO05D000972 1.8e-11 73.6 199 32.2
MD02G1064200 Malus domestica HOM05D001131 ORTHO05D000972 1.8e-11 73.6 159 35.2
Sp7g30630 Schrenkiella parvula HOM05D008625 ORTHO05D010623 1.8e-11 73.6 190 31.1
Rhsim05G0041000 Rhododendron simsii HOM05D001131 ORTHO05D000972 2.3e-11 73.2 196 32.7
Duzib150G0752 Durio zibethinus HOM05D001131 ORTHO05D000972 3.0e-11 72.8 197 32.0
Carub.0007s0763 Capsella rubella HOM05D008625 ORTHO05D010623 6.7e-11 71.6 186 31.7
Aqoxy7G01451 Aquilegia oxysepala HOM05D001131 ORTHO05D000972 8.7e-11 71.2 199 28.6
BraA03t15203Z Brassica rapa HOM05D008625 ORTHO05D010623 8.7e-11 71.2 183 31.7
Oeu017829.1 Olea europaea HOM05D001131 ORTHO05D000972 8.7e-11 71.2 182 32.4
Actinidia09444 Actinidia chinensis HOM05D001131 ORTHO05D000972 1.5e-10 70.5 195 27.7
TAR383G0743 Trochodendron aralioides HOM05D001131 ORTHO05D000972 1.9e-10 70.1 195 28.2
BcaC09g52084 Brassica carinata HOM05D008625 ORTHO05D010623 3.3e-10 69.3 185 33.0
A08p17870 Brassica napus HOM05D008625 ORTHO05D010623 3.3e-10 69.3 179 30.2
BraA08t33739Z Brassica rapa HOM05D008625 ORTHO05D010623 3.3e-10 69.3 179 30.2
Cpa.g.sc40.62 Carica papaya HOM05D001131 ORTHO05D000972 3.3e-10 69.3 191 31.4
CiPaw.04G158900 Carya illinoinensis HOM05D001131 ORTHO05D000972 3.3e-10 69.3 200 31.5
Lj4g0009018 Lotus japonicus HOM05D001131 ORTHO05D000972 3.3e-10 69.3 191 31.9
Thhalv10026293m.g Eutrema salsugineum HOM05D008625 ORTHO05D010623 4.3e-10 68.9 200 30.0
CSS0010038 Camellia sinensis var. sinensis HOM05D001131 ORTHO05D000972 5.6e-10 68.6 160 32.5
CSS0029495 Camellia sinensis var. sinensis HOM05D001131 ORTHO05D000972 5.6e-10 68.6 160 32.5
C03p86970 Brassica napus HOM05D008625 ORTHO05D010623 7.4e-10 68.2 179 30.2
C03p86990 Brassica napus HOM05D008625 ORTHO05D010623 7.4e-10 68.2 179 30.2
BolC3t20994H Brassica oleracea HOM05D008625 ORTHO05D010623 7.4e-10 68.2 179 30.2
Cfa003195 Carpinus fangiana HOM05D001131 ORTHO05D000972 7.4e-10 68.2 185 32.4
Lalb_Chr05g0223161 Lupinus albus HOM05D001131 ORTHO05D000972 7.4e-10 68.2 193 30.1
Glyma.08G034400 Glycine max HOM05D001131 ORTHO05D000972 9.6e-10 67.8 175 34.3
Atru.chr7.2063 Acer truncatum HOM05D001131 ORTHO05D000972 1.3e-09 67.4 178 36.0
DCAR_032098 Daucus carota HOM05D001131 ORTHO05D000972 1.3e-09 67.4 166 29.5
Migut.D01004 Erythranthe guttata HOM05D001131 ORTHO05D000972 1.3e-09 67.4 173 31.2
MBI04_g06590_MAGBIO Magnolia biondii HOM05D001131 ORTHO05D000972 1.3e-09 67.4 187 30.5
SalBow5G1205 Salvia bowleyana HOM05D001131 ORTHO05D000972 1.3e-09 67.4 156 30.8
Ciclev10009423m.g Citrus clementina HOM05D001131 ORTHO05D000972 2.1e-09 66.6 210 30.5
Dinv41661 Davidia involucrata HOM05D001131 ORTHO05D000972 3.7e-09 65.9 155 31.6
Thecc.09G102000 Theobroma cacao HOM05D001131 ORTHO05D000972 3.7e-09 65.9 199 30.2
Manes.16G074200 Manihot esculenta HOM05D001131 ORTHO05D000972 6.2e-09 65.1 205 30.2
Gohir.D07G008600 Gossypium hirsutum HOM05D001131 ORTHO05D000972 8.1e-09 64.7 200 31.5
Gorai.001G008700 Gossypium raimondii HOM05D001131 ORTHO05D000972 8.1e-09 64.7 200 31.5
VMungo0251G3636 Vigna mungo HOM05D001131 ORTHO05D000972 8.1e-09 64.7 180 33.3
Hma1.2p1_0012F.1_g007330 Hydrangea macrophylla HOM05D001131 ORTHO05D000972 1.1e-08 64.3 148 31.8
Atru.chr7.1445 Acer truncatum HOM05D001131 ORTHO05D000972 1.4e-08 63.9 188 28.7
Haze_25811 Corylus avellana HOM05D001131 ORTHO05D000972 1.4e-08 63.9 185 31.4
Nitab4.5_0000566g0010 Nicotiana tabacum HOM05D001131 ORTHO05D000972 1.4e-08 63.9 193 29.0
Oeu064195.1 Olea europaea HOM05D001131 ORTHO05D000972 1.4e-08 63.9 179 31.8
PGSC0003DMG400000363 Solanum tuberosum HOM05D001131 ORTHO05D000972 1.4e-08 63.9 203 30.0
Duzib168G1228 Durio zibethinus HOM05D001131 ORTHO05D000972 1.8e-08 63.5 175 32.0
Phvul.002G309700 Phaseolus vulgaris HOM05D001131 ORTHO05D000972 1.8e-08 63.5 174 30.5
Prupe.7G221500 Prunus persica HOM05D001131 ORTHO05D000972 1.8e-08 63.5 192 30.2
Manes.16G110200 Manihot esculenta HOM05D001131 ORTHO05D000972 3.1e-08 62.8 174 31.0
Gohir.A07G008200 Gossypium hirsutum HOM05D001131 ORTHO05D000972 4.0e-08 62.4 200 31.5
BcaB03g12766 Brassica carinata HOM05D008625 ORTHO05D010623 5.3e-08 62.0 167 29.3
FvH4_1g05960 Fragaria vesca HOM05D001131 ORTHO05D000972 5.3e-08 62.0 199 30.7
Eucgr.C01005 Eucalyptus grandis HOM05D001131 ORTHO05D000972 6.9e-08 61.6 199 30.2
THA.LOC104804518 Tarenaya hassleriana HOM05D008625 ORTHO05D010623 6.9e-08 61.6 120 39.2
Lsat_1_v5_gn_5_144661 Lactuca sativa HOM05D001131 ORTHO05D000972 9.0e-08 61.2 200 30.5
CiPaw.03G226200 Carya illinoinensis HOM05D001131 ORTHO05D000972 1.2e-07 60.8 201 31.3
FAN19G0216 Fragaria x ananassa HOM05D001131 ORTHO05D000972 1.2e-07 60.8 199 30.2
Oeu053163.1 Olea europaea HOM05D001131 ORTHO05D000972 1.2e-07 60.8 181 31.5
VMungo1080G0310 Vigna mungo HOM05D001131 ORTHO05D000972 1.2e-07 60.8 188 28.2
MBI01_g15519_MAGBIO Magnolia biondii HOM05D001131 ORTHO05D000972 1.5e-07 60.5 196 28.6
Aqoxy7G03882 Aquilegia oxysepala HOM05D001131 ORTHO05D000972 2.0e-07 60.1 95 34.7
RcHm_v2.0_Chr2g0091651 Rosa chinensis HOM05D001131 ORTHO05D000972 2.0e-07 60.1 199 29.6
MD15G1195000 Malus domestica HOM05D001131 ORTHO05D000972 3.4e-07 59.3 83 43.4
Oeu042060.1 Olea europaea HOM05D001131 ORTHO05D000972 4.5e-07 58.9 175 32.0
Potri.018G086500 Populus trichocarpa HOM05D001131 ORTHO05D000972 4.5e-07 58.9 188 28.2
FAN23G1180 Fragaria x ananassa HOM05D001131 ORTHO05D000972 7.6e-07 58.2 206 30.6
Manes.03G059800 Manihot esculenta HOM05D001131 ORTHO05D000972 7.6e-07 58.2 203 29.1
SGA_v2.0_scaffold69G23322 Striga asiatica HOM05D001131 ORTHO05D000972 7.6e-07 58.2 166 31.3
TWI34G1162 Tripterygium wilfordii HOM05D001131 ORTHO05D000972 7.6e-07 58.2 190 28.4
COL.COLO4_34765 Corchorus olitorius HOM05D001131 ORTHO05D000972 1.3e-06 57.4 86 44.2
DCAR_007581 Daucus carota HOM05D001131 ORTHO05D000972 1.3e-06 57.4 167 33.5
Sabra18G0074800 Salix brachista HOM05D001131 ORTHO05D000972 1.3e-06 57.4 159 29.6
FAN28G1130 Fragaria x ananassa HOM05D001131 ORTHO05D000972 1.7e-06 57.0 199 29.1
Sopen12g003340 Solanum pennellii HOM05D001131 ORTHO05D000972 1.7e-06 57.0 203 27.6
HanXRQChr10g0318331 Helianthus annuus HOM05D001131 ORTHO05D000972 2.2e-06 56.6 206 27.7
PSO210G5578 Papaver somniferum HOM05D001131 ORTHO05D000972 2.2e-06 56.6 93 35.5
Solyc12g008380.1 Solanum lycopersicum HOM05D001131 ORTHO05D000972 2.2e-06 56.6 200 27.5
Psat1g046520 Pisum sativum HOM05D001131 ORTHO05D000972 2.9e-06 56.2 183 29.0
MSTRG.11032 Avicennia marina HOM05D001131 ORTHO05D000972 3.8e-06 55.8 184 31.5
Lj2g0027083 Lotus japonicus HOM05D001131 ORTHO05D000972 3.8e-06 55.8 188 29.3
Medtr8g102660 Medicago truncatula HOM05D001131 ORTHO05D000972 3.8e-06 55.8 171 31.0
DCAR_027904 Daucus carota HOM05D001131 ORTHO05D000972 4.9e-06 55.5 164 28.0
FAN26G3052 Fragaria x ananassa HOM05D001131 ORTHO05D000972 6.4e-06 55.1 199 28.1
Lj3g0011894 Lotus japonicus HOM05D001131 ORTHO05D000972 6.4e-06 55.1 194 28.9
Oeu050602.1 Olea europaea HOM05D001131 ORTHO05D000972 6.4e-06 55.1 181 27.1


User provided reference genes

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