Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 2.1e-120 435.6 211 100.0
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 2.4e-108 395.6 210 89.5
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 3.5e-107 391.7 210 88.6
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 4.5e-107 391.3 210 88.6
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.0e-106 390.2 210 87.6
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.0e-103 380.2 210 87.1
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 2.3e-103 379.0 211 85.3
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 5.2e-103 377.9 210 87.1
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 1.1e-100 370.2 210 84.3
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 1.6e-99 366.3 210 81.9
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 2.0e-99 365.9 210 81.4
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 3.9e-98 361.7 210 81.9
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 5.6e-97 357.8 210 80.5
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 5.6e-97 357.8 210 80.5
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 1.3e-93 346.7 208 80.3
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 2.1e-91 339.3 210 76.7
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 4.6e-91 338.2 210 75.7
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 5.1e-90 334.7 204 75.5
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 6.6e-90 334.3 207 73.9
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 6.6e-90 334.3 204 77.0
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 8.6e-90 334.0 205 74.1
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 1.5e-89 333.2 203 76.8
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 1.5e-89 333.2 206 75.7
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 3.3e-89 332.0 209 71.8
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 5.6e-89 331.3 206 75.2
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 5.6e-89 331.3 206 73.8
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 1.6e-88 329.7 208 74.0
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 1.6e-88 329.7 208 74.0
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 2.1e-88 329.3 208 73.1
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 2.1e-88 329.3 208 73.1
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 3.6e-88 328.6 206 74.3
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 3.6e-88 328.6 207 72.0
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 4.7e-88 328.2 208 72.6
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 4.7e-88 328.2 208 71.6
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 1.1e-87 327.0 207 72.9
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 4.0e-87 325.1 208 73.1
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 5.2e-87 324.7 210 71.0
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 2.0e-86 322.8 208 73.1
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 3.4e-86 322.0 208 71.6
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 3.4e-86 322.0 207 71.0
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 4.4e-86 321.6 208 70.2
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 7.6e-86 320.9 207 70.0
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 3.7e-85 318.5 211 70.1
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 6.4e-85 317.8 207 69.1
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 6.4e-85 317.8 208 71.2
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.1e-84 317.0 210 71.4
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 1.1e-84 317.0 208 73.1
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 1.1e-84 317.0 207 69.6
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.4e-84 316.6 210 69.0
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 1.4e-84 316.6 208 69.7
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 1.9e-84 316.2 207 69.6
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 1.9e-84 316.2 207 68.1
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 1.9e-84 316.2 207 68.1
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 2.4e-84 315.8 207 68.6
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 4.1e-84 315.1 210 68.6
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 4.1e-84 315.1 207 68.1
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 5.4e-84 314.7 207 67.6
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 7.1e-84 314.3 205 69.3
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 9.2e-84 313.9 207 69.6
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 9.2e-84 313.9 207 68.6
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.2e-83 313.5 206 70.4
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 2.7e-83 312.4 210 69.0
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 3.5e-83 312.0 212 70.8
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 4.6e-83 311.6 210 71.0
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 1.0e-82 310.5 208 70.7
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 3.9e-82 308.5 205 68.3
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 5.1e-82 308.1 210 67.1
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 1.1e-81 307.0 212 69.8
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 1.1e-81 307.0 208 69.2
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 1.5e-81 306.6 208 69.7
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 1.5e-81 306.6 208 68.3
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 1.9e-81 306.2 208 70.2
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 1.9e-81 306.2 208 70.2
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 1.9e-81 306.2 208 70.2
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 4.3e-81 305.1 208 69.2
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 5.6e-81 304.7 208 68.8
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.2e-80 303.5 205 67.8
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 1.6e-80 303.1 209 68.4
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 4.7e-80 301.6 240 62.5
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 1.4e-79 300.1 208 65.9
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 1.8e-79 299.7 210 68.6
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 2.4e-79 299.3 210 67.1
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 4.0e-79 298.5 210 67.1
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 6.8e-79 297.7 208 66.8
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 2.0e-78 296.2 212 65.6
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 3.4e-78 295.4 210 66.2
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 4.9e-77 291.6 210 66.7
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 6.4e-77 291.2 208 66.8
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.4e-77 291.2 218 64.2
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 8.4e-77 290.8 207 64.7
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 2.1e-75 286.2 210 62.9
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 5.1e-74 281.6 196 68.9
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 8.7e-74 280.8 206 63.6
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 1.5e-73 280.0 184 66.8
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 1.5e-73 280.0 206 63.6
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 7.3e-73 277.7 208 63.0
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 3.6e-72 275.4 206 63.1
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.2e-72 274.6 184 70.1
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 4.4e-70 268.5 210 58.6
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.3e-69 266.9 198 64.6
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 2.9e-69 265.8 206 59.7
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 3.2e-68 262.3 197 64.0
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.1e-67 259.6 198 64.1
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 4.6e-67 258.5 204 62.7
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 7.9e-67 257.7 184 66.3
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 1.3e-66 256.9 168 71.4
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.1e-63 247.3 207 54.6
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 7.6e-62 241.1 206 52.4
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 1.7e-61 240.0 212 56.1
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.8e-61 238.8 159 71.1
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 3.8e-61 238.8 212 55.7
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 2.4e-60 236.1 204 54.4
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 3.0e-58 229.2 210 55.2
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.1e-57 227.3 212 53.8
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 1.5e-57 226.9 206 48.5
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 4.8e-56 221.9 135 73.3
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 2.9e-53 212.6 136 67.6
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 3.2e-52 209.1 189 51.3
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 3.2e-52 209.1 134 69.4
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.3e-49 199.1 231 48.9
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 7.4e-49 198.0 130 69.2
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 2.1e-48 196.4 199 50.8
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 3.7e-48 195.7 125 72.8
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 5.3e-47 191.8 171 53.2
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 5.8e-46 188.3 180 51.1
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 2.9e-45 186.0 211 42.2
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 8.4e-45 184.5 207 47.8
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.2e-35 154.1 109 67.0
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 7.9e-35 151.4 110 63.6
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 7.9e-27 124.8 204 33.8
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 8.8e-26 121.3 73 67.1
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 9.7e-25 117.9 230 31.3
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 2.6e-22 109.8 138 45.7
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 2.9e-21 106.3 77 67.5
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 2.9e-21 106.3 208 35.1
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.1e-20 104.4 70 70.0
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 1.8e-18 97.1 57 73.7
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 4.0e-18 95.9 109 47.7
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 4.0e-18 95.9 109 47.7
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 1.5e-17 94.0 209 30.6
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 2.6e-17 93.2 109 45.9
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 6.3e-16 88.6 178 32.6
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 9.1e-15 84.7 47 80.9
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 1.7e-13 80.5 199 24.6
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.9e-12 77.0 41 78.0
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 5.5e-12 75.5 55 61.8
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 2.1e-11 73.6 201 25.9
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 4.7e-11 72.4 108 42.6
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.0e-10 71.2 42 71.4
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 1.3e-08 64.3 40 72.5
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 5.4e-07 58.9 84 44.0
Cre10.g464500 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 1.2e-06 57.8 190 23.7
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 1.6e-06 57.4 84 42.9
PRCOL_00001065 Prasinoderma coloniale HOM05D004605 ORTHO05D005804 3.5e-06 56.2 167 25.1


User provided reference genes

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