Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 3.0e-154 548.5 281 100.0
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 8.4e-125 450.7 281 80.4
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 1.9e-124 449.5 283 81.6
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 2.4e-124 449.1 283 82.0
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 2.1e-123 446.0 281 79.7
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 1.9e-113 412.9 282 76.2
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 9.6e-113 410.6 281 75.4
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 1.2e-110 403.7 290 74.8
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 3.4e-110 402.1 290 74.1
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 1.9e-108 396.4 284 72.2
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 2.1e-107 392.9 284 70.8
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 1.1e-105 387.1 285 70.2
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 1.9e-105 386.3 265 75.5
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 5.7e-105 384.8 285 68.1
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 4.8e-104 381.7 284 69.0
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 1.2e-102 377.1 288 69.4
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 2.0e-102 376.3 288 68.4
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 7.7e-102 374.4 286 68.2
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 1.0e-101 374.0 287 68.6
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 1.0e-101 374.0 284 65.1
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 1.3e-101 373.6 289 68.2
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 2.2e-101 372.9 287 66.9
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 3.8e-101 372.1 253 72.7
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 1.1e-100 370.5 288 67.7
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.4e-100 370.2 288 67.7
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 1.4e-100 370.2 287 66.9
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 2.5e-100 369.4 288 67.0
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 3.2e-100 369.0 288 65.6
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 4.2e-100 368.6 286 67.8
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 7.2e-100 367.9 287 66.6
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 7.2e-100 367.9 288 67.4
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 1.2e-99 367.1 287 67.6
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 1.6e-99 366.7 286 65.0
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 4.6e-99 365.2 286 67.1
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 6.1e-99 364.8 286 65.4
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 7.9e-99 364.4 287 65.2
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 1.8e-98 363.2 287 65.9
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 2.3e-98 362.8 259 70.7
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.9e-98 362.1 283 66.4
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 2.6e-97 359.4 256 71.5
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 2.6e-97 359.4 283 65.7
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 3.3e-97 359.0 285 64.6
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 5.7e-97 358.2 282 66.3
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 2.2e-96 356.3 270 64.8
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.7e-96 355.5 282 66.0
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 4.8e-96 355.1 286 64.0
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 4.8e-96 355.1 286 64.3
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 2.0e-94 349.7 266 65.0
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 4.5e-94 348.6 286 62.6
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 5.9e-94 348.2 289 61.6
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 1.7e-93 346.7 297 62.3
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 2.2e-93 346.3 285 63.2
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 3.8e-93 345.5 286 63.3
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 3.8e-93 345.5 286 63.6
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 6.5e-93 344.7 286 62.9
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 1.4e-92 343.6 283 63.6
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 1.4e-92 343.6 252 66.7
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 2.5e-92 342.8 287 62.4
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 3.2e-92 342.4 287 62.0
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 4.2e-92 342.0 283 62.9
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 1.2e-91 340.5 287 62.0
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 1.2e-91 340.5 287 62.0
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 2.1e-91 339.7 247 69.2
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 2.7e-91 339.3 287 62.0
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 6.1e-91 338.2 253 67.2
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 6.1e-91 338.2 254 66.5
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 7.9e-91 337.8 296 61.5
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 1.0e-90 337.4 292 63.7
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 1.0e-90 337.4 285 62.5
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 3.0e-90 335.9 269 64.7
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 5.2e-90 335.1 240 69.6
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 8.8e-90 334.3 262 66.4
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 2.6e-89 332.8 240 67.9
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 5.7e-89 331.6 288 61.1
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 9.7e-89 330.9 279 62.0
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 3.7e-88 328.9 287 61.0
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 3.7e-88 328.9 298 59.7
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 6.3e-88 328.2 291 61.5
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 8.2e-88 327.8 279 61.6
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 1.1e-87 327.4 274 61.3
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 1.0e-85 320.9 240 66.7
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 1.0e-85 320.9 229 69.9
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 1.7e-85 320.1 265 62.6
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 2.9e-85 319.3 261 62.5
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 1.1e-84 317.4 286 58.4
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 3.2e-84 315.8 272 60.7
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 1.4e-82 310.5 218 68.8
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 2.3e-82 309.7 282 57.8
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 4.0e-82 308.9 244 66.8
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.3e-80 303.9 241 66.4
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 6.3e-80 301.6 241 61.0
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 1.1e-79 300.8 221 69.2
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 1.4e-79 300.4 220 68.6
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 2.2e-77 293.1 296 54.4
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 4.2e-76 288.9 292 57.2
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 4.2e-76 288.9 310 53.9
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 1.2e-73 280.8 175 78.9
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 1.7e-72 276.9 269 56.9
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 1.6e-70 270.4 244 59.8
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 7.7e-70 268.1 183 69.4
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 2.9e-69 266.2 238 59.7
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 2.9e-69 266.2 231 53.7
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 2.5e-68 263.1 224 55.8
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 3.2e-68 262.7 245 55.1
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 4.7e-67 258.8 175 72.6
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 3.0e-66 256.1 226 55.3
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 3.7e-64 249.2 227 55.9
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 8.3e-64 248.1 331 46.2
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 1.2e-59 234.2 240 50.4
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 2.3e-58 229.9 255 49.8
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 8.3e-56 221.5 266 48.5
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 7.8e-54 214.9 235 54.5
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 6.6e-53 211.8 245 46.5
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 5.2e-50 202.2 237 46.8
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 1.3e-48 197.6 168 63.7
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 1.8e-42 177.2 225 46.2
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 8.9e-42 174.9 112 73.2
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 1.6e-38 164.1 109 72.5
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 1.1e-36 157.9 223 40.4
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 8.9e-34 148.3 130 61.5
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 6.6e-29 132.1 195 40.0
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 1.2e-27 127.9 133 48.9
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 3.4e-25 119.8 79 64.6
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 5.8e-25 119.0 74 68.9
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 9.9e-25 118.2 101 61.4
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 1.3e-24 117.9 79 70.9
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 4.9e-24 115.9 74 67.6
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 2.7e-22 110.2 80 63.8
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 6.2e-19 99.0 139 36.7
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 9.9e-17 91.7 88 61.4
Phvul.005G084700 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 2.2e-16 90.5 125 46.4
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 1.4e-15 87.8 196 31.6
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 3.2e-15 86.7 99 53.5
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 4.2e-15 86.3 99 52.5
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 4.2e-15 86.3 99 52.5
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 7.1e-15 85.5 99 52.5
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.6e-14 84.3 99 51.5
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 1.0e-13 81.6 60 68.3
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 1.9e-12 77.4 52 71.2
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 1.8e-10 70.9 61 63.9
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 5.8e-09 65.9 60 51.7
Cre03.g171100 Chlamydomonas reinhardtii HOM05D005617 ORTHO05D006847 2.7e-06 57.0 103 33.0


User provided reference genes

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