Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 0.0e+00 2128.6 1113 100.0
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 0.0e+00 1671.0 1103 79.6
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 0.0e+00 1656.7 1098 77.9
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 0.0e+00 1645.6 1096 78.1
Phvul.001G135900 Phaseolus vulgaris HOM05D005711 ORTHO05D007125 0.0e+00 1611.3 1105 77.4
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 0.0e+00 1606.3 1101 76.2
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 0.0e+00 1600.1 1105 76.9
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 0.0e+00 1554.7 1082 74.6
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 0.0e+00 1548.5 1042 77.3
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 0.0e+00 1535.8 1105 72.6
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 0.0e+00 1530.0 1105 72.6
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 0.0e+00 1248.0 1122 60.0
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 0.0e+00 1238.8 1091 60.2
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 0.0e+00 1221.5 1074 61.0
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 0.0e+00 1207.2 1114 58.1
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 0.0e+00 1198.7 1115 57.1
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 0.0e+00 1198.3 1110 58.7
Manes.09G026800 Manihot esculenta HOM05D005711 ORTHO05D007125 0.0e+00 1198.0 1105 58.6
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 0.0e+00 1191.4 1111 57.9
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1181.8 1098 57.4
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 0.0e+00 1180.6 1100 58.2
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 0.0e+00 1178.7 1123 58.1
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1174.8 1097 56.6
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1174.1 1098 56.9
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1170.6 1093 56.4
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 0.0e+00 1168.7 1093 56.4
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1161.0 1097 55.6
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 0.0e+00 1158.7 1107 57.2
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 0.0e+00 1140.2 1103 55.6
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 0.0e+00 1137.5 1098 56.2
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 0.0e+00 1132.9 1103 55.8
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 0.0e+00 1129.4 1103 55.6
Haze_19901 Corylus avellana HOM05D005711 ORTHO05D007125 0.0e+00 1122.8 1092 57.4
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 0.0e+00 1118.2 1109 55.1
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1105.9 1102 53.6
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 0.0e+00 1090.1 1107 54.4
Sed0005844 Sechium edule HOM05D005711 ORTHO05D007125 0.0e+00 1081.6 1111 53.0
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 1.1e-310 1070.1 1101 54.3
CsaV3_4G031330 Cucumis sativus L. HOM05D005711 ORTHO05D007125 9.5e-305 1050.4 1111 52.4
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 1.7e-301 1039.6 1106 53.9
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 3.5e-299 1031.9 1100 50.9
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 1.9e-297 1026.2 1097 51.3
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 4.3e-297 1025.0 1094 51.5
A09p50460 Brassica napus HOM05D005711 ORTHO05D007125 1.7e-293 1013.1 1093 51.3
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 2.9e-293 1012.3 1103 51.0
BraA09t40497Z Brassica rapa HOM05D005711 ORTHO05D007125 1.1e-292 1010.4 1104 51.2
C08p33160 Brassica napus HOM05D005711 ORTHO05D007125 7.1e-292 1007.7 1124 50.4
BolC8t50918H Brassica oleracea HOM05D005711 ORTHO05D007125 2.1e-291 1006.1 1122 50.4
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 4.3e-289 998.4 1090 50.6
MELO3C009042.2 Cucumis melo HOM05D005711 ORTHO05D007125 8.1e-288 994.2 1146 50.3
MSTRG.6443 Avicennia marina HOM05D005711 ORTHO05D007125 1.4e-287 993.4 1096 48.1
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 2.9e-285 985.7 1130 49.3
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 3.8e-285 985.3 1103 50.1
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 8.4e-285 984.2 1021 53.7
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 1.0e-282 977.2 1091 47.5
Oeu018003.1 Olea europaea HOM05D005711 ORTHO05D007125 1.5e-281 973.4 1107 48.5
COL.COLO4_28164 Corchorus olitorius HOM05D005711 ORTHO05D007125 3.3e-281 972.2 976 54.5
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 1.4e-279 966.8 919 55.9
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 2.3e-274 949.5 1109 48.2
ECA248G2859 Erigeron canadensis HOM05D005711 ORTHO05D007125 1.9e-273 946.4 1071 49.8
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 4.3e-273 945.3 872 55.3
SGA_v2.0_scaffold69G23097 Striga asiatica HOM05D005711 ORTHO05D007125 6.9e-271 937.9 1114 46.1
Lj2C380T2 Lonicera japonica HOM05D005711 ORTHO05D007125 8.7e-266 921.0 947 53.9
Sc25g0005260 Simmondsia chinensis HOM05D005711 ORTHO05D007125 3.3e-265 919.1 1041 49.2
Aa31LG10G12390 Aethionema arabicum HOM05D005711 ORTHO05D007125 1.1e-263 914.1 1096 48.7
Cpa.g.sc92.19 Carica papaya HOM05D005711 ORTHO05D007125 4.5e-262 908.7 821 58.8
AUR62026001 Chenopodium quinoa HOM05D005711 ORTHO05D007125 1.0e-261 907.5 1109 46.4
Rhsim03G0016500 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.9e-260 903.3 954 52.2
EL10Ac3g07027 Beta vulgaris HOM05D005711 ORTHO05D007125 2.9e-253 879.4 1110 45.3
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 2.1e-251 873.2 977 49.2
Lsat_1_v5_gn_5_162580 Lactuca sativa HOM05D005711 ORTHO05D007125 6.1e-251 871.7 1097 47.0
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 2.5e-249 866.3 780 58.5
Ah.13g076290 Amaranthus hybridus HOM05D005711 ORTHO05D007125 5.9e-246 855.1 1156 42.9
ATR0605G192 Amborella trichopoda HOM05D005711 ORTHO05D007125 1.1e-241 840.9 1129 44.9
DCAR_009055 Daucus carota HOM05D005711 ORTHO05D007125 1.2e-238 830.9 1108 44.7
CDE10G0401 Ceratophyllum demersum HOM05D005711 ORTHO05D007125 1.4e-236 823.9 1117 43.5
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 5.5e-236 822.0 909 49.6
BcaC07g40362 Brassica carinata HOM05D005711 ORTHO05D007125 6.7e-226 788.5 979 46.4
Peaxi162Scf00650g00112 Petunia axillaris HOM05D005711 ORTHO05D007125 2.6e-225 786.6 1096 42.2
SalBow6G5243 Salvia bowleyana HOM05D005711 ORTHO05D007125 1.5e-220 770.8 1077 42.1
Eucgr.A02387 Eucalyptus grandis HOM05D005711 ORTHO05D007125 2.0e-209 733.8 744 54.0
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 3.2e-191 673.3 756 48.1
FvH4_7g07942 Fragaria vesca HOM05D005711 ORTHO05D007125 9.2e-191 671.8 625 54.7
vmacro22370 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 3.3e-180 636.7 800 45.9
AUR62024408 Chenopodium quinoa HOM05D005711 ORTHO05D007125 4.3e-172 609.8 727 47.2
Nitab4.5_0002510g0050 Nicotiana tabacum HOM05D005711 ORTHO05D007125 9.9e-169 598.6 1090 36.3
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.0e-165 588.6 929 39.9
Pp3c13_4080 Physcomitrium patens HOM05D005711 ORTHO05D007125 5.8e-145 519.6 1091 32.9
Mapoly0169s0013 Marchantia polymorpha HOM05D005711 ORTHO05D007125 1.6e-139 501.5 1341 29.2
ClCG04G000850 Citrullus lanatus HOM05D005711 ORTHO05D007125 1.4e-138 498.4 691 42.7
Rhsim03G0016100 Rhododendron simsii HOM05D005711 ORTHO05D007125 5.5e-119 433.3 462 52.4
ClCG04G000840 Citrullus lanatus HOM05D005711 ORTHO05D007125 1.1e-114 419.1 449 52.6
vmacro07877 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 1.8e-101 375.2 339 55.5
CARHR167810 Cardamine hirsuta HOM05D005711 ORTHO05D007125 1.2e-97 362.5 334 60.2
FAN01G1916 Fragaria x ananassa HOM05D005711 ORTHO05D007125 5.9e-97 360.1 386 50.5
Rhsim03G0014800 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.0e-96 359.4 591 39.1
Thecc.05G160900 Theobroma cacao HOM05D005711 ORTHO05D007125 1.9e-95 355.1 355 53.2
Rhsim05G0135200 Rhododendron simsii HOM05D005711 ORTHO05D007125 2.3e-88 331.6 1232 27.5
vmacro07878 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 5.6e-87 327.0 331 54.1
Nitab4.5_0005201g0010 Nicotiana tabacum HOM05D005711 ORTHO05D007125 4.6e-81 307.4 293 55.6
Solyc03g063700.1 Solanum lycopersicum HOM05D005711 ORTHO05D007125 3.1e-77 294.7 310 51.3
PGSC0003DMG402011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 1.2e-73 282.7 284 53.5
Sabra06G0038400 Salix brachista HOM05D005711 ORTHO05D007125 2.4e-58 231.9 233 60.9
Dinv01671 Davidia involucrata HOM05D005711 ORTHO05D007125 1.3e-56 226.1 281 48.0
AUR62024409 Chenopodium quinoa HOM05D005711 ORTHO05D007125 3.4e-52 211.5 353 36.8
SEGI_36353 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 1.5e-47 196.1 258 45.3
SMO356G0176 Selaginella moellendorffii HOM05D005711 ORTHO05D007125 1.8e-45 189.1 311 41.5
SEGI_00323 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 5.3e-45 187.6 259 42.9
Rhsim03G0097300 Rhododendron simsii HOM05D005711 ORTHO05D007125 5.4e-42 177.6 376 35.1
PGSC0003DMG401011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 4.6e-41 174.5 207 45.4
BcaC07g40361 Brassica carinata HOM05D005711 ORTHO05D007125 1.5e-39 169.5 138 66.7
Cpa.g.sc92.20 Carica papaya HOM05D005711 ORTHO05D010193 4.0e-37 161.4 174 50.6
COL.COLO4_28165 Corchorus olitorius HOM05D005711 ORTHO05D007125 3.5e-33 148.3 152 55.3
Lj2A380T68 Lonicera japonica HOM05D005711 ORTHO05D007125 1.8e-32 146.0 172 48.3
Hma1.2p1_0247F.1_g101860 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 4.3e-31 141.4 160 50.0
Nitab4.5_0010669g0020 Nicotiana tabacum HOM05D005711 ORTHO05D007125 4.3e-31 141.4 482 27.0
CBR_g41427 Chara braunii HOM05D005711 ORTHO05D007125 1.4e-29 136.3 393 29.0
FvH4_7g07943 Fragaria vesca HOM05D005711 ORTHO05D007125 3.8e-19 101.7 99 51.5
FAN06G4049 Fragaria x ananassa HOM05D005711 ORTHO05D007125 3.8e-19 101.7 99 51.5
FAN10G0844 Fragaria x ananassa HOM05D005711 ORTHO05D007125 3.8e-19 101.7 99 51.5
FAN26G1840 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.1e-18 100.1 143 41.3
FvH4_7g07941 Fragaria vesca HOM05D005711 ORTHO05D007125 2.5e-18 99.0 127 51.2
Nitab4.5_0010669g0030 Nicotiana tabacum HOM05D005711 ORTHO05D007125 7.9e-17 94.0 161 37.9
SalBow4G0785 Salvia bowleyana HOM05D005711 ORTHO05D007125 3.3e-15 88.6 137 38.7
arahy.Tifrunner.gnm1.ann1.N4MAIX Arachis hypogaea HOM05D005711 ORTHO05D007125 3.7e-14 85.1 62 71.0
MCO09G818 Micromonas commoda HOM05D005711 ORTHO05D007125 3.2e-10 72.0 423 22.5
SEGI_21308 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 4.7e-09 68.2 97 38.1
Hma1.2p1_0247F.1_g101870 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 2.3e-08 65.9 98 39.8
Rhsim03G0016400 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.5e-07 63.2 81 44.4
BolC4t25036H Brassica oleracea HOM05D005711 ORTHO05D040726 2.0e-07 62.8 122 41.0


User provided reference genes

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