Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 1.8e-122 442.6 216 100.0
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 1.2e-94 350.1 216 81.0
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 7.7e-94 347.4 220 79.5
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 7.7e-94 347.4 220 79.5
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 1.3e-93 346.7 208 81.7
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 6.5e-93 344.4 208 81.7
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 8.5e-93 344.0 215 79.1
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 4.0e-90 335.1 208 79.8
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 1.3e-85 320.1 191 82.7
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 1.9e-84 316.2 211 74.4
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 3.2e-84 315.5 211 73.9
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 4.2e-84 315.1 202 76.2
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 7.2e-84 314.3 216 72.7
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 9.4e-84 313.9 193 77.7
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 1.6e-83 313.2 218 72.0
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 8.0e-83 310.8 216 72.2
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 8.0e-83 310.8 216 72.7
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 1.8e-82 309.7 211 72.5
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 4.0e-82 308.5 207 72.0
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 4.0e-82 308.5 214 73.8
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 1.2e-81 307.0 209 71.8
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 2.0e-81 306.2 212 73.1
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 3.4e-81 305.4 207 72.5
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 1.3e-80 303.5 216 70.4
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.7e-80 303.1 188 78.2
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.7e-80 303.1 188 78.2
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 2.2e-80 302.8 211 70.1
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 4.9e-80 301.6 196 75.5
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 6.3e-80 301.2 203 73.9
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 6.3e-80 301.2 217 71.0
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 1.1e-79 300.4 228 68.4
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 1.4e-79 300.1 188 76.6
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 1.6e-78 296.6 214 71.0
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 1.0e-77 293.9 209 70.3
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 1.7e-77 293.1 212 67.5
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 1.7e-77 293.1 188 76.1
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 6.6e-77 291.2 208 70.7
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 1.1e-76 290.4 220 66.8
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 1.5e-76 290.0 207 68.1
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 1.9e-76 289.7 224 67.0
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 1.9e-76 289.7 224 67.0
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 1.9e-76 289.7 183 74.9
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 2.5e-76 289.3 209 68.4
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 4.3e-76 288.5 217 68.2
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 9.5e-76 287.3 204 69.1
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 1.6e-75 286.6 206 68.4
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 4.7e-75 285.0 199 66.8
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 6.1e-75 284.6 188 72.3
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 6.1e-75 284.6 206 68.0
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 6.1e-75 284.6 209 68.9
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 1.0e-74 283.9 202 67.3
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 1.4e-74 283.5 202 67.8
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 5.2e-74 281.6 188 73.4
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 1.2e-73 280.4 206 66.0
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 2.6e-73 279.3 186 73.1
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 2.6e-73 279.3 186 73.1
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 3.4e-73 278.9 216 64.8
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 3.4e-73 278.9 224 65.6
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 5.7e-73 278.1 186 73.1
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 5.7e-73 278.1 187 71.1
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 5.7e-73 278.1 196 69.9
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 9.8e-73 277.3 186 73.1
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 9.8e-73 277.3 186 73.1
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 1.3e-72 276.9 217 64.5
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 1.3e-72 276.9 186 73.1
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 8.3e-72 274.2 220 65.0
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 1.4e-71 273.5 203 69.0
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 9.2e-71 270.8 187 69.5
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 9.2e-71 270.8 186 69.4
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 2.0e-70 269.6 180 69.4
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 5.9e-70 268.1 208 65.9
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 1.3e-69 266.9 195 69.2
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 3.0e-69 265.8 144 88.2
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 1.1e-68 263.8 211 63.5
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 2.5e-68 262.7 218 62.8
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 3.3e-68 262.3 228 61.0
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 3.3e-68 262.3 205 63.9
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 1.6e-67 260.0 192 67.2
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 3.6e-67 258.8 181 69.6
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 4.0e-66 255.4 212 63.7
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 1.5e-65 253.4 175 70.3
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 1.1e-63 247.3 172 70.9
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 1.6e-62 243.4 141 80.1
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 2.3e-61 239.6 183 68.3
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 3.0e-61 239.2 154 76.6
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 6.6e-61 238.0 168 72.6
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 3.3e-60 235.7 182 65.4
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 3.3e-60 235.7 141 79.4
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 4.3e-60 235.3 173 66.5
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 3.1e-58 229.2 173 63.6
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 4.0e-58 228.8 168 64.9
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 5.8e-57 224.9 173 60.7
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 2.9e-56 222.6 173 60.1
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 2.1e-54 216.5 181 60.2
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 8.6e-53 211.1 164 61.6
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 1.5e-52 210.3 144 72.2
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 5.1e-45 185.3 133 72.9
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 3.6e-43 179.1 150 63.3
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 2.2e-40 169.9 183 50.3
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 4.9e-40 168.7 189 49.7
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 2.7e-38 162.9 201 47.8
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 1.5e-36 157.1 123 65.0
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 1.3e-35 154.1 120 63.3
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 4.8e-35 152.1 238 39.1
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 2.2e-32 143.3 84 76.2
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 6.4e-32 141.7 84 75.0
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 2.5e-28 129.8 170 42.4
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 1.8e-26 123.6 177 43.5
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 1.7e-24 117.1 55 94.5
Lalb_Chr19g0127491 Lupinus albus HOM05D006988 ORTHO05D008731 4.2e-23 112.5 87 67.8
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 9.3e-23 111.3 91 60.4
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 8.7e-21 104.8 105 57.1
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 7.4e-20 101.7 95 55.8
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 2.5e-15 86.7 82 52.4
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 2.7e-14 83.2 62 62.9
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 1.3e-13 80.9 64 62.5
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 1.6e-11 73.9 68 55.9
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 5.3e-10 68.9 34 85.3
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 8.5e-08 61.6 141 31.2
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 1.1e-07 61.2 141 28.4
Mapoly0058s0022 Marchantia polymorpha HOM05D005663 ORTHO05D007258 1.9e-07 60.5 209 29.2
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 2.5e-07 60.1 33 78.8
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 4.2e-07 59.3 141 30.5
Hund03480 Selenicereus undatus HOM05D005663 ORTHO05D007258 7.2e-07 58.5 140 28.6
Actinidia06667 Actinidia chinensis HOM05D005663 ORTHO05D007258 1.6e-06 57.4 140 27.9
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 1.6e-06 57.4 177 27.1
Haze_25191 Corylus avellana HOM05D005663 ORTHO05D007258 1.6e-06 57.4 141 29.1
Lsat_1_v5_gn_4_138241 Lactuca sativa HOM05D005663 ORTHO05D007258 1.6e-06 57.4 141 28.4
Ciclev10026263m.g Citrus clementina HOM05D005663 ORTHO05D007258 2.7e-06 56.6 189 25.9
SalBow2G3104 Salvia bowleyana HOM05D005663 ORTHO05D007258 3.6e-06 56.2 186 24.7
PRCOL_00002581 Prasinoderma coloniale HOM05D005663 ORTHO05D002254 4.6e-06 55.8 192 28.6
Solyc11g005340.3 Solanum lycopersicum HOM05D005663 ORTHO05D007258 4.6e-06 55.8 142 26.8
Cre03.g188650 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 6.1e-06 55.5 174 28.7
EL10Ac6g15254 Beta vulgaris HOM05D005663 ORTHO05D007258 7.9e-06 55.1 100 31.0


User provided reference genes

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