Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 0.0e+00 1127.5 558 100.0
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 4.3e-298 1027.3 556 91.2
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 1.3e-297 1025.8 558 90.1
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 6.0e-292 1006.9 560 88.9
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 6.7e-291 1003.4 559 88.2
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 3.7e-289 997.7 558 88.0
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 6.5e-286 986.9 557 87.6
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 1.9e-285 985.3 559 86.4
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 7.9e-284 979.9 558 86.4
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 8.8e-283 976.5 558 86.0
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 5.9e-271 937.2 559 82.6
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 2.2e-270 935.3 557 82.9
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 1.4e-269 932.6 557 82.4
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.6e-268 929.1 557 81.3
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.0e-267 926.4 557 81.1
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.8e-267 925.6 557 81.0
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 3.3e-266 921.4 559 81.9
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 5.7e-266 920.6 556 80.8
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 7.4e-266 920.2 550 82.4
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 2.2e-265 918.7 567 79.9
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 2.8e-265 918.3 557 81.3
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 2.8e-265 918.3 559 81.0
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 4.8e-265 917.5 556 82.2
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 1.4e-264 916.0 557 81.9
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 1.0e-262 909.8 557 79.0
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.0e-262 909.8 557 79.5
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 1.5e-261 906.0 555 78.9
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 1.9e-261 905.6 559 79.4
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 7.2e-261 903.7 553 80.7
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 2.1e-260 902.1 559 78.7
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 4.7e-260 901.0 559 77.5
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 1.0e-259 899.8 558 78.3
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 2.3e-259 898.7 557 78.6
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 5.2e-259 897.5 557 77.7
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 1.2e-258 896.3 557 81.0
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.5e-258 896.0 558 78.1
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 3.3e-258 894.8 557 79.4
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 5.7e-258 894.0 559 77.3
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 7.5e-258 893.6 557 77.9
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 1.3e-257 892.9 559 78.2
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 3.7e-257 891.3 557 78.8
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 4.8e-257 891.0 557 78.5
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 1.1e-256 889.8 560 77.9
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 5.3e-256 887.5 559 78.4
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 7.0e-256 887.1 574 76.0
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 7.0e-256 887.1 556 77.7
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 7.0e-256 887.1 556 77.7
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 7.0e-256 887.1 556 77.7
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 4.5e-255 884.4 557 77.6
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 3.8e-254 881.3 558 77.1
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 2.5e-253 878.6 557 76.5
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 3.2e-253 878.2 556 76.8
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 3.2e-253 878.2 558 77.1
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 1.2e-252 876.3 556 77.2
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 2.1e-252 875.5 556 77.0
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 2.1e-252 875.5 556 77.3
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 2.1e-252 875.5 555 76.6
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 3.6e-252 874.8 556 77.7
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 8.0e-252 873.6 555 76.6
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 1.0e-251 873.2 557 76.5
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 1.8e-251 872.5 576 74.5
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 5.2e-251 870.9 557 77.2
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 6.8e-251 870.5 557 75.4
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 1.2e-250 869.8 557 75.4
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 1.2e-250 869.8 557 75.0
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 1.5e-250 869.4 556 76.4
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 5.7e-250 867.5 557 76.3
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 5.7e-250 867.5 556 76.4
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 3.7e-249 864.8 537 78.4
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 6.3e-249 864.0 559 74.6
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 2.0e-247 859.0 525 81.1
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 1.3e-246 856.3 563 75.1
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 2.3e-246 855.5 569 75.0
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 3.8e-246 854.7 557 76.3
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 5.0e-246 854.4 575 73.2
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 8.6e-246 853.6 556 75.5
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.5e-245 852.8 557 75.9
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 1.9e-245 852.4 557 74.3
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 3.3e-245 851.7 584 72.3
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 8.0e-244 847.0 557 74.9
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 1.8e-243 845.9 562 74.9
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 5.2e-243 844.3 562 74.6
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 2.0e-242 842.4 558 74.4
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 3.4e-242 841.6 542 75.5
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 7.5e-242 840.5 574 73.0
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 7.5e-242 840.5 558 74.0
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 7.5e-242 840.5 557 73.2
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 3.7e-241 838.2 556 74.6
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 3.7e-241 838.2 559 73.5
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.1e-240 836.6 556 73.6
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 2.4e-240 835.5 551 73.7
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 2.4e-240 835.5 557 72.9
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 4.1e-240 834.7 532 77.3
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 4.1e-240 834.7 514 78.2
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 5.4e-240 834.3 538 75.5
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 7.0e-240 833.9 558 72.9
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 3.5e-239 831.6 570 74.7
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 1.0e-238 830.1 558 72.4
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 4.3e-237 824.7 551 72.4
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 3.6e-236 821.6 559 72.6
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 1.0e-235 820.1 558 72.6
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 5.2e-235 817.8 602 70.1
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 8.9e-235 817.0 553 72.3
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 5.6e-229 797.7 549 70.7
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 6.2e-228 794.3 600 67.7
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 8.0e-228 793.9 553 71.2
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 6.8e-227 790.8 488 79.1
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.3e-225 786.6 554 70.4
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 1.7e-225 786.2 562 70.3
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 2.9e-225 785.4 540 71.7
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 6.0e-223 777.7 557 67.9
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 4.4e-218 761.5 560 68.9
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 5.4e-216 754.6 557 69.1
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.6e-215 753.1 541 69.7
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 1.6e-215 753.1 488 74.2
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 2.1e-215 752.7 558 66.7
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 2.4e-208 729.2 542 68.5
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 6.2e-204 714.5 447 77.6
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 3.1e-203 712.2 391 89.0
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 4.0e-203 711.8 556 61.7
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.1e-197 693.7 563 64.1
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 1.7e-185 653.3 544 58.6
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 7.1e-184 647.9 550 55.8
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 2.0e-178 629.8 433 71.8
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 5.5e-176 621.7 391 78.0
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 4.5e-170 602.1 559 56.5
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 3.2e-168 595.9 548 54.6
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 4.6e-167 592.0 391 74.7
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.9e-160 570.1 486 55.6
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 2.2e-148 530.0 322 79.2
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 6.3e-140 501.9 290 83.4
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 3.6e-135 486.1 320 73.4
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 4.0e-134 482.6 321 72.9
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 5.2e-134 482.3 308 76.6
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 3.7e-132 476.1 336 69.3
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 1.5e-120 437.6 268 80.6
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 5.8e-117 425.6 292 69.9
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 1.1e-112 411.4 273 74.4
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.1e-107 394.8 245 78.8
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 1.1e-99 368.2 240 78.3
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 5.1e-97 359.4 238 73.9
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 2.0e-93 347.4 235 73.6
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 4.2e-83 313.2 263 60.8
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 7.7e-53 212.6 138 74.6
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 2.9e-52 210.7 186 60.8
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.2e-51 207.2 139 71.9
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 4.2e-51 206.8 137 71.5
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 7.2e-51 206.1 139 71.9
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 2.1e-50 204.5 140 71.4
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.8e-46 191.4 128 72.7
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 9.4e-35 152.5 98 73.5
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 4.0e-33 147.1 116 62.1
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 5.0e-28 130.2 106 65.1
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 2.0e-21 108.2 63 81.0
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 2.7e-21 107.8 71 70.4
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 3.5e-21 107.5 63 79.4
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 8.5e-20 102.8 63 76.2
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.6e-18 97.4 68 69.1
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 8.0e-18 96.3 68 69.1
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 5.2e-17 93.6 62 69.4
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 1.2e-16 92.4 496 24.0
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 2.6e-16 91.3 57 70.2
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 2.4e-14 84.7 490 24.1
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 4.1e-14 84.0 244 26.2
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 4.1e-14 84.0 54 74.1
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 4.7e-10 70.5 54 55.6
Thecc.03G047200 Theobroma cacao HOM05D000075 ORTHO05D408647 9.8e-08 62.8 64 62.5
PRCOL_00006907 Prasinoderma coloniale HOM05D013921 ORTHO05D014814 2.2e-07 61.6 433 22.6
ECA247G1273 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.1e-06 59.3 61 45.9


User provided reference genes

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