Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 6.1e-247 857.1 441 100.0
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 2.1e-215 752.3 441 87.8
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 4.7e-215 751.1 439 87.9
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 1.4e-214 749.6 441 88.7
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 1.4e-214 749.6 442 87.6
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 1.7e-212 742.7 441 88.0
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 2.9e-212 741.9 439 87.0
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.0e-209 733.4 442 85.7
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 3.3e-208 728.4 440 85.5
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 3.3e-208 728.4 440 85.5
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 7.3e-208 727.2 438 86.3
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 8.9e-206 720.3 442 83.0
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 1.5e-205 719.5 443 83.5
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 3.8e-204 714.9 442 82.1
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 1.9e-203 712.6 442 82.4
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 3.2e-203 711.8 443 81.5
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 5.4e-203 711.1 444 82.0
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 4.6e-202 708.0 443 82.2
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 6.0e-202 707.6 444 81.3
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 1.7e-201 706.1 443 81.3
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.0e-201 705.3 442 81.7
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 8.7e-201 703.7 444 81.3
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 1.5e-200 703.0 441 83.9
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.5e-200 703.0 439 80.6
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 1.9e-200 702.6 442 82.8
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 2.5e-200 702.2 443 81.0
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 4.3e-200 701.4 445 80.4
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 5.6e-200 701.0 443 81.9
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.6e-199 699.5 442 81.2
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.6e-199 699.5 442 80.8
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 2.1e-199 699.1 445 80.9
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 2.8e-199 698.7 440 81.6
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 3.6e-199 698.4 442 81.7
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 3.6e-199 698.4 442 81.4
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 4.7e-199 698.0 440 81.4
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 8.1e-199 697.2 441 81.0
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 1.1e-198 696.8 442 81.7
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 2.4e-198 695.7 443 79.9
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 2.4e-198 695.7 444 81.5
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 4.0e-198 694.9 447 80.3
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 1.2e-197 693.3 446 80.7
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 2.6e-197 692.2 442 81.0
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 2.6e-197 692.2 441 80.5
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 3.4e-197 691.8 448 79.9
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 5.8e-197 691.0 446 80.7
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.3e-196 689.9 445 79.1
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 1.7e-196 689.5 447 81.4
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 2.9e-196 688.7 441 81.0
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 3.8e-196 688.3 444 80.9
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 6.4e-196 687.6 443 81.3
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 8.4e-196 687.2 445 80.0
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 1.9e-195 686.0 442 81.0
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 1.9e-195 686.0 440 79.8
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 3.2e-195 685.3 442 80.5
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 9.3e-195 683.7 443 79.0
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 3.5e-194 681.8 445 80.4
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 4.6e-194 681.4 442 79.9
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 7.8e-194 680.6 446 80.0
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 7.8e-194 680.6 445 78.9
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 3.0e-193 678.7 444 78.8
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 6.6e-193 677.6 443 79.7
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 6.6e-193 677.6 442 80.3
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 8.7e-193 677.2 444 79.5
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 1.1e-192 676.8 444 80.0
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 1.1e-192 676.8 443 79.9
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.5e-192 676.4 443 79.7
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.5e-192 676.4 442 79.2
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 1.9e-192 676.0 440 80.0
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 1.9e-192 676.0 442 79.4
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 2.5e-192 675.6 442 80.1
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 1.6e-191 672.9 439 78.8
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 1.6e-191 672.9 440 78.4
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 1.1e-190 670.2 445 77.3
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 4.0e-190 668.3 439 78.8
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 5.3e-190 667.9 440 77.0
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 2.0e-189 666.0 439 78.8
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 2.0e-189 666.0 389 85.6
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 4.5e-189 664.8 443 77.0
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 2.9e-188 662.1 438 77.2
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 8.4e-188 660.6 378 85.4
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.9e-187 659.4 378 85.2
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 1.2e-186 656.8 440 77.5
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 2.7e-186 655.6 438 76.7
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 3.5e-186 655.2 441 77.1
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 7.9e-186 654.1 415 81.7
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 2.3e-185 652.5 440 76.6
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 2.3e-185 652.5 448 78.1
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 8.7e-185 650.6 444 76.4
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 1.1e-184 650.2 441 76.4
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 1.1e-184 650.2 441 76.4
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 1.5e-184 649.8 414 80.4
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 2.5e-184 649.0 444 77.9
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 9.6e-184 647.1 434 76.7
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 2.1e-183 646.0 393 81.9
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 2.1e-183 646.0 443 77.0
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 2.1e-183 646.0 403 80.6
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 3.7e-183 645.2 439 75.6
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 3.7e-183 645.2 439 75.6
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 6.2e-183 644.4 440 75.5
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 8.1e-183 644.0 383 83.3
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 3.4e-181 638.6 444 75.2
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 4.5e-181 638.3 439 75.4
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 9.9e-181 637.1 439 75.9
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 9.9e-181 637.1 439 75.2
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 1.7e-180 636.3 439 75.9
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 8.4e-180 634.0 381 82.7
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 8.4e-180 634.0 444 75.5
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 8.4e-180 634.0 444 75.5
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 8.4e-180 634.0 381 82.7
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 8.4e-180 634.0 439 74.3
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.4e-179 633.3 428 76.2
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 2.5e-179 632.5 423 76.8
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 2.3e-177 625.9 388 82.5
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 2.3e-177 625.9 439 73.3
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 2.5e-176 622.5 485 70.3
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 9.6e-176 620.5 441 73.9
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 2.1e-175 619.4 439 74.5
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 1.4e-171 606.7 482 66.8
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 2.2e-167 592.8 444 72.1
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 2.4e-166 589.3 444 71.8
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 4.1e-166 588.6 381 80.6
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.4e-161 573.5 366 80.9
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 6.3e-159 564.7 362 82.0
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 7.7e-157 557.8 390 76.2
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 4.4e-152 542.0 411 66.4
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 1.4e-150 537.0 376 71.0
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 4.5e-149 531.9 403 65.3
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 5.9e-149 531.6 307 87.9
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 1.5e-144 516.9 363 68.6
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 6.3e-143 511.5 377 67.9
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 7.0e-142 508.1 361 68.4
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 7.0e-142 508.1 406 62.1
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 1.2e-141 507.3 370 68.1
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 5.9e-141 505.0 414 63.3
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.7e-140 503.4 422 62.6
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 3.8e-140 502.3 422 62.3
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 1.5e-139 500.4 361 69.8
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 1.2e-138 497.3 378 63.5
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 1.1e-134 484.2 393 62.6
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 3.5e-133 479.2 394 58.9
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.0e-129 467.6 391 58.8
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 1.4e-129 467.2 317 75.4
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 1.5e-128 463.8 359 63.2
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 1.5e-115 420.6 365 60.0
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 1.6e-98 364.0 367 54.2
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 5.1e-92 342.4 302 60.3
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 3.6e-82 309.7 226 69.9
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 2.3e-68 263.8 204 70.6
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.3e-68 263.8 328 44.8
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 5.1e-60 236.1 125 89.6
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 8.7e-60 235.3 157 79.0
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 1.3e-58 231.5 198 59.6
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 1.1e-54 218.4 160 67.5
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 5.0e-39 166.4 162 52.5
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 1.4e-38 164.9 119 70.6
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 6.7e-36 156.0 111 74.8
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 5.3e-33 146.4 81 88.9
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 5.9e-32 142.9 82 87.8
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 2.5e-30 137.5 108 61.1
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.3e-26 125.2 80 71.2
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 6.1e-21 106.3 78 62.8
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 1.2e-19 102.1 51 90.2
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 2.5e-14 84.3 94 50.0
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 2.7e-08 64.3 136 34.6


User provided reference genes

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