Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0025083 Lotus japonicus HOM05D000072 ORTHO05D000026 4.2e-97 357.8 159 100.0
Lj1g0025807 Lotus japonicus HOM05D000072 ORTHO05D000026 5.9e-51 204.5 143 68.5
Medtr1g027360 Medicago truncatula HOM05D000072 ORTHO05D000026 1.1e-36 157.1 154 50.6
VMungo0647G0024 Vigna mungo HOM05D000072 ORTHO05D000026 1.1e-36 157.1 142 52.1
Glyma.13G032900 Glycine max HOM05D000072 ORTHO05D000026 1.0e-34 150.6 120 55.0
Phvul.008G174900 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 1.3e-34 150.2 146 47.9
VMungo0874G0001 Vigna mungo HOM05D000072 ORTHO05D000026 1.7e-34 149.8 116 54.3
Glyma.13G033400 Glycine max HOM05D000072 ORTHO05D000026 3.9e-34 148.7 127 53.5
Phvul.008G174400 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 3.9e-34 148.7 143 51.0
Phvul.008G175100 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 8.6e-34 147.5 126 52.4
Medtr1g026950 Medicago truncatula HOM05D000072 ORTHO05D000026 1.1e-33 147.1 136 52.2
Phvul.001G075600 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 2.5e-33 146.0 142 52.1
VMungo0647G0478 Vigna mungo HOM05D000072 ORTHO05D000026 2.5e-33 146.0 115 54.8
Glyma.13G033500 Glycine max HOM05D000072 ORTHO05D000026 3.3e-33 145.6 127 52.8
Glyma.14G113200 Glycine max HOM05D000072 ORTHO05D000026 3.3e-33 145.6 127 55.1
Medtr1g027180 Medicago truncatula HOM05D000072 ORTHO05D000026 3.3e-33 145.6 149 52.3
Medtr1g027450 Medicago truncatula HOM05D000072 ORTHO05D000026 3.3e-33 145.6 138 51.4
TPR.G14894 Trifolium pratense HOM05D000072 ORTHO05D000026 5.6e-33 144.8 136 50.7
Glyma.17G214600 Glycine max HOM05D000072 ORTHO05D000026 9.5e-33 144.1 119 56.3
Glyma.17G214400 Glycine max HOM05D000072 ORTHO05D000026 1.2e-32 143.7 139 51.8
TPR.G14893 Trifolium pratense HOM05D000072 ORTHO05D000026 1.2e-32 143.7 147 49.0
Medtr1g027440 Medicago truncatula HOM05D000072 ORTHO05D000026 1.6e-32 143.3 151 47.7
Glyma.13G033000 Glycine max HOM05D000072 ORTHO05D000026 2.8e-32 142.5 146 49.3
Phvul.001G069400 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 2.8e-32 142.5 115 53.9
Glyma.13G032600 Glycine max HOM05D000072 ORTHO05D000026 3.6e-32 142.1 113 54.9
Glyma.17G214100 Glycine max HOM05D000072 ORTHO05D000026 3.6e-32 142.1 122 54.9
TPR.G14890 Trifolium pratense HOM05D000072 ORTHO05D000026 3.6e-32 142.1 149 48.3
Medtr1g026970 Medicago truncatula HOM05D000072 ORTHO05D000026 8.1e-32 141.0 148 48.6
Glyma.17G214900 Glycine max HOM05D000072 ORTHO05D000026 4.0e-31 138.7 121 55.4
Phvul.001G069280 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 4.0e-31 138.7 115 52.2
Phvul.001G068600 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 1.2e-30 137.1 110 54.5
Medtr1g027260 Medicago truncatula HOM05D000072 ORTHO05D000026 1.5e-30 136.7 128 54.7
VMungo0647G0077 Vigna mungo HOM05D000072 ORTHO05D000026 1.5e-30 136.7 116 52.6
VMungo0647G2057 Vigna mungo HOM05D000072 ORTHO05D000026 2.6e-30 136.0 116 53.4
Medtr1g027380 Medicago truncatula HOM05D000072 ORTHO05D000026 3.4e-30 135.6 135 48.1
TPR.G29525 Trifolium pratense HOM05D000072 ORTHO05D000026 4.4e-30 135.2 140 49.3
Phvul.001G070100 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 1.3e-29 133.7 115 53.0
VMungo0647G1211 Vigna mungo HOM05D000072 ORTHO05D000026 2.3e-26 122.9 116 49.1
Phvul.001G048701 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 3.0e-26 122.5 145 44.1
Phvul.001G048900 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 6.6e-26 121.3 115 50.4
VMungo0647G1486 Vigna mungo HOM05D000072 ORTHO05D000026 2.5e-25 119.4 126 49.2
Phvul.001G049101 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 5.6e-25 118.2 116 47.4
TPR.G14891 Trifolium pratense HOM05D000072 ORTHO05D000026 7.3e-25 117.9 120 51.7
VMungo0647G2458 Vigna mungo HOM05D000072 ORTHO05D000026 7.3e-25 117.9 116 49.1
Phvul.001G048050 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 2.1e-24 116.3 114 49.1
Phvul.001G049300 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 3.6e-24 115.5 119 47.9
Phvul.001G047900 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 6.2e-24 114.8 119 46.2
LjContig00081g0025762 Lotus japonicus HOM05D000072 ORTHO05D000026 8.1e-24 114.4 146 43.2
VMungo0647G0081 Vigna mungo HOM05D000072 ORTHO05D000026 1.4e-23 113.6 126 46.8
Ca_12723_v3 Cicer arietinum L. HOM05D000072 ORTHO05D000026 1.8e-23 113.2 164 39.0
Phvul.001G048600 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 1.8e-23 113.2 122 46.7
Phvul.001G049000 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 1.8e-23 113.2 122 46.7
Medtr1g027520 Medicago truncatula HOM05D000072 ORTHO05D000026 2.4e-23 112.8 97 55.7
Ca_12716_v3 Cicer arietinum L. HOM05D000072 ORTHO05D000026 5.2e-23 111.7 164 40.2
VMungo0647G2107 Vigna mungo HOM05D000072 ORTHO05D000026 8.9e-23 110.9 136 43.4
VMungo0647G0934 Vigna mungo HOM05D000072 ORTHO05D000026 3.4e-22 109.0 117 47.0
Phvul.001G048800 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 5.8e-22 108.2 119 46.2
Psat6g037240 Pisum sativum HOM05D000072 ORTHO05D000026 7.6e-22 107.8 159 38.4
TPR.G20008 Trifolium pratense HOM05D000072 ORTHO05D000026 7.6e-22 107.8 157 39.5
Phvul.001G048200 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 1.7e-21 106.7 114 46.5
LjContig00081g0020868 Lotus japonicus HOM05D000072 ORTHO05D000026 1.4e-20 103.6 148 43.2
TPR.G20037 Trifolium pratense HOM05D000072 ORTHO05D000026 3.2e-20 102.4 157 36.9
TPR.G20004 Trifolium pratense HOM05D000072 ORTHO05D000026 5.4e-20 101.7 144 40.3
TPR.G20640 Trifolium pratense HOM05D000072 ORTHO05D000026 6.0e-19 98.2 136 41.2
Lj5g0015762 Lotus japonicus HOM05D000072 ORTHO05D000026 7.8e-19 97.8 141 41.1
arahy.Tifrunner.gnm1.ann1.DY953T Arachis hypogaea HOM05D000072 ORTHO05D000026 2.3e-18 96.3 153 36.6
arahy.Tifrunner.gnm1.ann1.KA4ME6 Arachis hypogaea HOM05D000072 ORTHO05D000026 2.3e-18 96.3 153 36.6
Medtr1g027070 Medicago truncatula HOM05D000072 ORTHO05D000026 5.1e-18 95.1 156 37.2
TPR.G14882 Trifolium pratense HOM05D000072 ORTHO05D000026 6.6e-18 94.7 160 35.0
TPR.G20010 Trifolium pratense HOM05D000072 ORTHO05D000026 2.5e-17 92.8 124 38.7
TPR.G33324 Trifolium pratense HOM05D000072 ORTHO05D000026 2.5e-17 92.8 130 36.9
Glyma.04G117100 Glycine max HOM05D000072 ORTHO05D000026 5.6e-17 91.7 73 58.9
Phvul.001G048500 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 1.3e-16 90.5 90 46.7
Medtr1g027030 Medicago truncatula HOM05D000072 ORTHO05D000026 2.8e-16 89.4 176 33.5
Medtr1g027830 Medicago truncatula HOM05D000072 ORTHO05D000026 2.8e-16 89.4 122 41.0
arahy.Tifrunner.gnm1.ann1.60SZUC Arachis hypogaea HOM05D000072 ORTHO05D000026 3.6e-16 89.0 120 40.0
arahy.Tifrunner.gnm1.ann1.YWVW6N Arachis hypogaea HOM05D000072 ORTHO05D000026 3.6e-16 89.0 120 40.0
Medtr3g028640 Medicago truncatula HOM05D000072 ORTHO05D000026 1.4e-15 87.0 135 39.3
Ca_12704_v3 Cicer arietinum L. HOM05D000072 ORTHO05D000026 2.4e-15 86.3 149 37.6
Lj2g0005375 Lotus japonicus HOM05D000072 ORTHO05D000026 2.4e-15 86.3 128 38.3
Medtr1g027050 Medicago truncatula HOM05D000072 ORTHO05D000026 2.4e-15 86.3 183 31.7
Medtr1g027140 Medicago truncatula HOM05D000072 ORTHO05D000026 3.1e-15 85.9 175 34.3
TPR.G33340 Trifolium pratense HOM05D000072 ORTHO05D000026 5.3e-15 85.1 164 32.9
Medtr1g028250 Medicago truncatula HOM05D000072 ORTHO05D000026 9.0e-15 84.3 131 38.2
Medtr1g027710 Medicago truncatula HOM05D000072 ORTHO05D000026 2.0e-14 83.2 153 34.0
Medtr1g027950 Medicago truncatula HOM05D000072 ORTHO05D000026 2.6e-14 82.8 148 29.7
arahy.Tifrunner.gnm1.ann1.03K4CT Arachis hypogaea HOM05D000072 ORTHO05D000026 5.8e-14 81.6 164 32.9
Lj6g0014842 Lotus japonicus HOM05D000072 ORTHO05D000026 5.8e-14 81.6 95 45.3
Medtr1g027880 Medicago truncatula HOM05D000072 ORTHO05D000026 1.3e-13 80.5 160 31.9
arahy.Tifrunner.gnm1.ann1.5I5RMF Arachis hypogaea HOM05D000072 ORTHO05D000026 1.7e-13 80.1 164 32.9
arahy.Tifrunner.gnm1.ann1.03NGAM Arachis hypogaea HOM05D000072 ORTHO05D000026 2.9e-13 79.3 88 40.9
arahy.Tifrunner.gnm1.ann1.QYD1P6 Arachis hypogaea HOM05D000072 ORTHO05D000026 2.9e-13 79.3 88 40.9
arahy.Tifrunner.gnm1.ann1.CYE9F3 Arachis hypogaea HOM05D000072 ORTHO05D000026 1.1e-12 77.4 128 37.5
arahy.Tifrunner.gnm1.ann1.H4EH7V Arachis hypogaea HOM05D000072 ORTHO05D000026 1.1e-12 77.4 128 37.5
TPR.G33316 Trifolium pratense HOM05D000072 ORTHO05D000026 1.9e-12 76.6 159 29.6
Lj1g0011022 Lotus japonicus HOM05D000072 ORTHO05D000026 7.1e-12 74.7 96 41.7
TPR.G36536 Trifolium pratense HOM05D000072 ORTHO05D000026 1.2e-11 73.9 120 37.5
Prupe.2G048700 Prunus persica HOM05D000072 ORTHO05D000026 2.7e-11 72.8 123 32.5
Medtr6g044970 Medicago truncatula HOM05D000072 ORTHO05D000026 6.0e-11 71.6 119 35.3
arahy.Tifrunner.gnm1.ann1.8WBV9W Arachis hypogaea HOM05D000072 ORTHO05D000026 7.9e-11 71.2 124 37.1
arahy.Tifrunner.gnm1.ann1.SWK2H1 Arachis hypogaea HOM05D000072 ORTHO05D000026 7.9e-11 71.2 124 37.1
MD02G1273500 Malus domestica HOM05D000072 ORTHO05D000026 7.9e-11 71.2 114 36.0
Psat6g038800 Pisum sativum HOM05D000072 ORTHO05D000026 1.0e-10 70.9 110 34.5
TPR.G29384 Trifolium pratense HOM05D000072 ORTHO05D000026 1.0e-10 70.9 138 31.9
TPR.G33344 Trifolium pratense HOM05D000072 ORTHO05D000026 1.3e-10 70.5 111 33.3
Medtr1g028090 Medicago truncatula HOM05D000072 ORTHO05D000026 1.7e-10 70.1 102 42.2
Medtr1g028150 Medicago truncatula HOM05D000072 ORTHO05D000026 1.7e-10 70.1 124 35.5
Manes.06G158900 Manihot esculenta HOM05D000072 ORTHO05D000026 3.0e-10 69.3 134 33.6
Glyma.19G069300 Glycine max HOM05D000072 ORTHO05D000026 8.7e-10 67.8 154 28.6
Sabra15G0014000 Salix brachista HOM05D000072 ORTHO05D000026 8.7e-10 67.8 103 37.9
Ca_12706_v3 Cicer arietinum L. HOM05D000072 ORTHO05D000026 1.1e-09 67.4 132 34.8
Medtr1g028280 Medicago truncatula HOM05D000072 ORTHO05D000026 1.1e-09 67.4 110 32.7
Lalb_Chr10g0091371 Lupinus albus HOM05D000072 ORTHO05D000026 1.5e-09 67.0 150 28.0
TWI18G0166 Tripterygium wilfordii HOM05D000072 ORTHO05D000026 1.5e-09 67.0 136 32.4
Psat6g038400 Pisum sativum HOM05D000072 ORTHO05D000026 1.9e-09 66.6 152 34.2
TWI18G0810 Tripterygium wilfordii HOM05D000072 ORTHO05D000026 3.3e-09 65.9 115 35.7
TWI18G0827 Tripterygium wilfordii HOM05D000072 ORTHO05D000026 3.3e-09 65.9 115 35.7
VMungo0647G2020 Vigna mungo HOM05D000072 ORTHO05D000026 3.3e-09 65.9 61 45.9
Psat6g038080 Pisum sativum HOM05D000072 ORTHO05D000026 7.3e-09 64.7 127 34.6
TWI18G1011 Tripterygium wilfordii HOM05D000072 ORTHO05D000026 7.3e-09 64.7 131 33.6
QL09p009937 Quercus lobata HOM05D000072 ORTHO05D000026 1.6e-08 63.5 121 33.1
TPR.G33295 Trifolium pratense HOM05D000072 ORTHO05D000026 1.6e-08 63.5 107 38.3
QL09p009750 Quercus lobata HOM05D000072 ORTHO05D000026 2.8e-08 62.8 133 31.6
Lalb_Chr02g0156651 Lupinus albus HOM05D000072 ORTHO05D000026 4.8e-08 62.0 157 28.7
FAN07G0463 Fragaria x ananassa HOM05D000072 ORTHO05D000026 6.2e-08 61.6 112 34.8
Manes.14G007108 Manihot esculenta HOM05D000072 ORTHO05D000026 6.2e-08 61.6 100 36.0
VMungo1127G0546 Vigna mungo HOM05D000072 ORTHO05D000026 6.2e-08 61.6 110 31.8
MSTRG.8670 Avicennia marina HOM05D000072 ORTHO05D000026 8.1e-08 61.2 114 30.7
Potri.015G018600 Populus trichocarpa HOM05D000072 ORTHO05D000026 8.1e-08 61.2 105 37.1
MD02G1274000 Malus domestica HOM05D000072 ORTHO05D000026 1.8e-07 60.1 110 33.6
TPR.G20026 Trifolium pratense HOM05D000072 ORTHO05D000026 1.8e-07 60.1 58 48.3
FvH4_7g04150 Fragaria vesca HOM05D000072 ORTHO05D000026 2.4e-07 59.7 112 28.6
Manes.11G116600 Manihot esculenta HOM05D000072 ORTHO05D000026 2.4e-07 59.7 111 30.6
Lalb_Chr02g0156661 Lupinus albus HOM05D000072 ORTHO05D000026 4.0e-07 58.9 141 29.1
FAN03G2036 Fragaria x ananassa HOM05D000072 ORTHO05D000026 6.9e-07 58.2 94 35.1
RcHm_v2.0_Chr1g0328501 Rosa chinensis HOM05D000072 ORTHO05D000026 6.9e-07 58.2 121 28.9
FvH4_4g34450 Fragaria vesca HOM05D000072 ORTHO05D000026 9.0e-07 57.8 94 35.1
FvH4_7g04170 Fragaria vesca HOM05D000072 ORTHO05D000026 9.0e-07 57.8 114 27.2
FAN03G1257 Fragaria x ananassa HOM05D000072 ORTHO05D000026 9.0e-07 57.8 121 29.8
FAN10G3322 Fragaria x ananassa HOM05D000072 ORTHO05D000026 9.0e-07 57.8 115 28.7
Nitab4.5_0000825g0100 Nicotiana tabacum HOM05D000072 ORTHO05D000026 9.0e-07 57.8 88 36.4
VMungo0647G2456 Vigna mungo HOM05D000072 ORTHO05D000026 9.0e-07 57.8 122 29.5
Prupe.2G088300 Prunus persica HOM05D000072 ORTHO05D000026 1.2e-06 57.4 97 37.1
TWI75G0666 Tripterygium wilfordii HOM05D000072 ORTHO05D000026 1.2e-06 57.4 120 30.8
DCAR_009117 Daucus carota HOM05D000072 ORTHO05D000026 1.5e-06 57.0 96 32.3
Manes.11G116800 Manihot esculenta HOM05D000072 ORTHO05D000026 1.5e-06 57.0 123 30.9
Prupe.2G047500 Prunus persica HOM05D000072 ORTHO05D000026 1.5e-06 57.0 119 30.3
Rhsim06G0112200 Rhododendron simsii HOM05D000072 ORTHO05D000026 1.5e-06 57.0 141 27.7
RcHm_v2.0_Chr1g0328371 Rosa chinensis HOM05D000072 ORTHO05D000026 1.5e-06 57.0 115 31.3
PGSC0003DMG400010701 Solanum tuberosum HOM05D000072 ORTHO05D000026 1.5e-06 57.0 157 28.7
FAN10G2588 Fragaria x ananassa HOM05D000072 ORTHO05D000026 2.0e-06 56.6 94 35.1
SalBow4G0677 Salvia bowleyana HOM05D000072 ORTHO05D000026 2.0e-06 56.6 126 28.6
SalBow4G1890 Salvia bowleyana HOM05D000072 ORTHO05D000026 2.0e-06 56.6 126 28.6
FvH4_7g04160 Fragaria vesca HOM05D000072 ORTHO05D000026 2.6e-06 56.2 90 31.1
TWI75G1248 Tripterygium wilfordii HOM05D000072 ORTHO05D000026 2.6e-06 56.2 127 30.7
SalBow1G8570 Salvia bowleyana HOM05D000072 ORTHO05D000026 3.4e-06 55.8 86 27.9
SalBow4G1560 Salvia bowleyana HOM05D000072 ORTHO05D000026 3.4e-06 55.8 110 29.1
SalBow4G2617 Salvia bowleyana HOM05D000072 ORTHO05D000026 3.4e-06 55.8 86 27.9
SalBow4G2953 Salvia bowleyana HOM05D000072 ORTHO05D000026 3.4e-06 55.8 86 27.9
Cfa021379 Carpinus fangiana HOM05D000072 ORTHO05D000026 4.5e-06 55.5 119 31.1
Phvul.001G075800 Phaseolus vulgaris HOM05D000072 ORTHO05D000026 4.5e-06 55.5 128 28.9
TWI12G1378 Tripterygium wilfordii HOM05D000072 ORTHO05D000026 4.5e-06 55.5 141 29.1
COL.COLO4_06423 Corchorus olitorius HOM05D000072 ORTHO05D000026 5.8e-06 55.1 103 32.0
SalBow4G0175 Salvia bowleyana HOM05D000072 ORTHO05D000026 5.8e-06 55.1 119 26.1
SalBow4G1353 Salvia bowleyana HOM05D000072 ORTHO05D000026 5.8e-06 55.1 119 26.1
Glyma.14G118800 Glycine max HOM05D000072 ORTHO05D000026 7.6e-06 54.7 117 30.8
TPR.G20643 Trifolium pratense HOM05D000072 ORTHO05D000026 7.6e-06 54.7 133 30.1
TWI18G0005 Tripterygium wilfordii HOM05D000072 ORTHO05D000026 7.6e-06 54.7 146 29.5
TWI75G1532 Tripterygium wilfordii HOM05D000072 ORTHO05D000026 9.9e-06 54.3 115 28.7


User provided reference genes

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