Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0024820 Lotus japonicus HOM05D005189 ORTHO05D006093 1.4e-237 825.9 409 100.0
Glyma.09G081700 Glycine max HOM05D005189 ORTHO05D006093 8.9e-176 620.5 408 76.2
TPR.G23365 Trifolium pratense HOM05D005189 ORTHO05D006093 7.1e-173 610.9 409 71.6
Medtr7g105630 Medicago truncatula HOM05D005189 ORTHO05D006093 3.9e-171 605.1 413 73.4
Phvul.011G074000 Phaseolus vulgaris HOM05D005189 ORTHO05D006093 1.6e-169 599.7 362 77.6
Lalb_Chr01g0008881 Lupinus albus HOM05D005189 ORTHO05D006093 3.6e-169 598.6 405 71.6
Psat3g030640 Pisum sativum HOM05D005189 ORTHO05D006093 1.8e-168 596.3 362 76.8
arahy.Tifrunner.gnm1.ann1.3WZ8U6 Arachis hypogaea HOM05D005189 ORTHO05D006093 7.6e-167 590.9 412 69.7
Lj6g0027180 Lotus japonicus HOM05D005189 ORTHO05D006093 1.3e-166 590.1 414 74.2
arahy.Tifrunner.gnm1.ann1.U1QXXC Arachis hypogaea HOM05D005189 ORTHO05D006093 4.9e-166 588.2 411 73.2
arahy.Tifrunner.gnm1.ann1.4RF6J7 Arachis hypogaea HOM05D005189 ORTHO05D006093 6.4e-166 587.8 404 71.5
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 6.4e-166 587.8 408 71.1
arahy.Tifrunner.gnm1.ann1.ZR0QLK Arachis hypogaea HOM05D005189 ORTHO05D006093 7.1e-165 584.3 399 72.2
Ca_09036_v3 Cicer arietinum L. HOM05D006431 ORTHO05D007918 1.1e-162 577.0 408 68.4
Glyma.12G070400 Glycine max HOM05D005189 ORTHO05D006093 2.5e-154 549.3 376 74.7
QL06p006883 Quercus lobata HOM05D005189 ORTHO05D006093 1.3e-145 520.4 362 65.5
arahy.Tifrunner.gnm1.ann1.ALS4S9 Arachis hypogaea HOM05D005189 ORTHO05D006093 2.9e-142 509.2 404 64.1
Potri.002G201200 Populus trichocarpa HOM05D005189 ORTHO05D006093 7.1e-141 504.6 362 64.1
Cfa010639 Carpinus fangiana HOM05D005189 ORTHO05D006093 6.1e-140 501.5 360 64.7
TWI23G0603 Tripterygium wilfordii HOM05D005189 ORTHO05D006093 1.3e-137 493.8 365 63.6
ClCG03G014110 Citrullus lanatus HOM05D005189 ORTHO05D006093 6.9e-136 488.0 365 60.8
CiPaw.01G112900 Carya illinoinensis HOM05D005189 ORTHO05D006093 1.2e-135 487.3 345 65.2
Ciclev10020359m.g Citrus clementina HOM05D005189 ORTHO05D006093 3.4e-135 485.7 367 60.5
Actinidia25825 Actinidia chinensis HOM05D005189 ORTHO05D006093 7.7e-135 484.6 362 61.9
CsaV3_1G042140 Cucumis sativus L. HOM05D005189 ORTHO05D006093 1.0e-134 484.2 365 60.5
CSS0031632 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 1.3e-134 483.8 362 62.7
PGR044G0984 Punica granatum HOM05D005189 ORTHO05D006093 2.9e-134 482.6 368 60.6
PGR047G0002 Punica granatum HOM05D005189 ORTHO05D006093 2.9e-134 482.6 368 60.6
Dinv33081 Davidia involucrata HOM05D005189 ORTHO05D006093 5.0e-134 481.9 361 61.2
MELO3C015632.2 Cucumis melo HOM05D005189 ORTHO05D006093 3.2e-133 479.2 365 60.3
TAR365G0047 Trochodendron aralioides HOM05D005189 ORTHO05D006093 3.2e-133 479.2 367 61.3
Gohir.D11G168500 Gossypium hirsutum HOM05D005189 ORTHO05D006093 6.1e-132 474.9 364 61.5
Sabra02G0157700 Salix brachista HOM05D005189 ORTHO05D006093 7.9e-132 474.6 422 54.5
GSVIVG01028059001 Vitis vinifera HOM05D005189 ORTHO05D006093 7.9e-132 474.6 367 60.2
Gohir.A11G162200 Gossypium hirsutum HOM05D005189 ORTHO05D006093 1.4e-131 473.8 364 61.5
Sopen08g025020 Solanum pennellii HOM05D005189 ORTHO05D006093 1.4e-131 473.8 361 59.0
arahy.Tifrunner.gnm1.ann1.5FY99X Arachis hypogaea HOM05D005189 ORTHO05D006093 1.8e-131 473.4 404 61.4
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 3.0e-131 472.6 362 61.6
Thecc.05G192400 Theobroma cacao HOM05D005189 ORTHO05D006093 3.9e-131 472.2 364 61.3
EL10Ac2g03409 Beta vulgaris HOM05D005189 ORTHO05D006093 5.1e-131 471.9 363 61.7
Gorai.007G180000 Gossypium raimondii HOM05D005189 ORTHO05D006093 6.7e-131 471.5 364 61.0
Cpa.g.sc151.36 Carica papaya HOM05D005189 ORTHO05D006093 8.8e-131 471.1 363 60.6
PGSC0003DMG400014794 Solanum tuberosum HOM05D005189 ORTHO05D006093 3.3e-130 469.2 393 57.8
THA.LOC104801289 Tarenaya hassleriana HOM05D005189 ORTHO05D006093 3.3e-130 469.2 364 59.3
MBI19_g05150_MAGBIO Magnolia biondii HOM05D005189 ORTHO05D006093 1.3e-129 467.2 363 60.3
Eucgr.D00103 Eucalyptus grandis HOM05D005189 ORTHO05D006093 2.8e-129 466.1 384 58.1
CAN.G1987.2 Capsicum annuum HOM05D005189 ORTHO05D006093 8.2e-129 464.5 361 58.2
Oeu008336.1 Olea europaea HOM05D005189 ORTHO05D006093 8.2e-129 464.5 361 59.6
Nitab4.5_0000809g0080 Nicotiana tabacum HOM05D005189 ORTHO05D006093 5.3e-128 461.8 361 58.2
Aqoxy2G02861 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 2.0e-127 459.9 363 59.5
Duzib128G0399 Durio zibethinus HOM05D005189 ORTHO05D006093 2.9e-126 456.1 364 59.6
Atru.chr5.1082 Acer truncatum HOM05D005189 ORTHO05D006093 3.8e-126 455.7 366 57.7
Manes.03G058600 Manihot esculenta HOM05D005189 ORTHO05D006093 3.8e-126 455.7 369 60.4
Prupe.4G131100 Prunus persica HOM05D005189 ORTHO05D006093 6.5e-126 454.9 361 59.6
Manes.05G000401 Manihot esculenta HOM05D005189 ORTHO05D006093 1.1e-125 454.1 365 60.5
Sed0013075 Sechium edule HOM05D005189 ORTHO05D006093 1.1e-125 454.1 362 58.3
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 1.9e-125 453.4 364 55.8
Aa31LG5G1890 Aethionema arabicum HOM05D005189 ORTHO05D006093 4.2e-125 452.2 368 54.9
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 4.2e-125 452.2 364 55.2
SalBow6G1077 Salvia bowleyana HOM05D005189 ORTHO05D006093 4.2e-125 452.2 364 57.7
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 9.4e-125 451.1 364 56.0
AUR62024701 Chenopodium quinoa HOM05D005189 ORTHO05D006093 1.2e-124 450.7 361 59.6
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 1.2e-124 450.7 344 61.9
AUR62011856 Chenopodium quinoa HOM05D005189 ORTHO05D006093 2.1e-124 449.9 361 59.3
PSO765G0055 Papaver somniferum HOM05D005189 ORTHO05D006093 2.7e-124 449.5 362 56.6
Carub.0006s3494 Capsella rubella HOM05D005189 ORTHO05D006093 6.1e-124 448.4 368 54.6
Nn8g40249 Nelumbo nucifera HOM05D005189 ORTHO05D006093 6.1e-124 448.4 337 61.1
MD10G1211200 Malus domestica HOM05D005189 ORTHO05D006093 1.0e-123 447.6 361 59.3
MD05G1235200 Malus domestica HOM05D005189 ORTHO05D006093 1.8e-123 446.8 361 59.6
Sc05g0003490 Simmondsia chinensis HOM05D005189 ORTHO05D006093 8.8e-123 444.5 362 57.7
Migut.D00121 Erythranthe guttata HOM05D005189 ORTHO05D006093 3.3e-122 442.6 364 56.9
Cc01_g21150 Coffea canephora HOM05D005189 ORTHO05D006093 4.4e-122 442.2 365 55.9
FvH4_3g14570 Fragaria vesca HOM05D005189 ORTHO05D006093 4.4e-122 442.2 362 58.6
Sp6g02120 Schrenkiella parvula HOM05D005189 ORTHO05D006093 7.4e-122 441.4 365 54.0
BcaC04g24048 Brassica carinata HOM05D005189 ORTHO05D006093 9.7e-122 441.0 363 54.8
CARHR250440 Cardamine hirsuta HOM05D005189 ORTHO05D006093 1.3e-121 440.7 364 54.1
FAN16G0469 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.3e-121 440.7 362 58.0
FAN21G1757 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.4e-120 437.2 363 57.6
DCAR_005781 Daucus carota HOM05D005189 ORTHO05D006093 4.1e-120 435.6 361 56.2
RcHm_v2.0_Chr5g0024021 Rosa chinensis HOM05D005189 ORTHO05D006093 5.3e-120 435.3 362 58.0
MSTRG.13027 Avicennia marina HOM05D005189 ORTHO05D006093 1.2e-119 434.1 364 56.0
Eucgr.D00338 Eucalyptus grandis HOM05D005189 ORTHO05D006093 1.5e-119 433.7 366 57.4
Peaxi162Scf00170g00624 Petunia axillaris HOM05D005189 ORTHO05D006093 2.2e-118 429.9 335 57.6
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 5.0e-118 428.7 367 53.1
HPP92_013737 Vanilla planifolia HOM05D005189 ORTHO05D006093 5.0e-118 428.7 364 55.8
Nitab4.5_0000529g0190 Nicotiana tabacum HOM05D005189 ORTHO05D006093 9.4e-117 424.5 361 54.6
CDE02G1252 Ceratophyllum demersum HOM05D005189 ORTHO05D006093 2.7e-116 422.9 361 56.0
PSO782G1813 Papaver somniferum HOM05D005189 ORTHO05D006093 6.1e-116 421.8 363 54.8
ECA236G2822 Erigeron canadensis HOM05D000141 ORTHO05D000780 5.2e-115 418.7 360 53.6
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 6.7e-115 418.3 361 54.6
Os03g0300200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 8.8e-115 417.9 364 56.3
SGA_v2.0_scaffold334G49031 Striga asiatica HOM05D000141 ORTHO05D000780 1.1e-114 417.5 361 55.4
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 4.8e-113 412.1 369 54.7
Zm00001eb013970 Zea mays HOM05D005189 ORTHO05D006093 1.1e-112 411.0 363 54.0
Zm00001eb396540 Zea mays HOM05D005189 ORTHO05D006093 1.8e-112 410.2 368 53.0
Lsat_1_v5_gn_8_164980 Lactuca sativa HOM05D005189 ORTHO05D006093 4.7e-108 395.6 374 52.7
ATR0665G541 Amborella trichopoda HOM05D005189 ORTHO05D006093 4.0e-107 392.5 370 53.0
Solyc08g076440.4 Solanum lycopersicum HOM05D005189 ORTHO05D006093 1.5e-106 390.6 361 50.4
HanXRQChr04g0114701 Helianthus annuus HOM05D005189 ORTHO05D006093 4.4e-106 389.0 364 53.3
HanXRQChr04g0111211 Helianthus annuus HOM05D005189 ORTHO05D006093 1.4e-104 384.0 355 52.1
C09p01760 Brassica napus HOM05D005189 ORTHO05D006093 5.0e-102 375.6 321 53.0
A09p01690 Brassica napus HOM05D005189 ORTHO05D006093 6.5e-102 375.2 316 52.5
Rhsim13G0007900 Rhododendron simsii HOM05D005189 ORTHO05D006093 2.3e-99 366.7 376 50.3
FAN11G2688 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.2e-98 364.4 390 48.7
EL10Ac9g21129 Beta vulgaris HOM05D005189 ORTHO05D006093 3.7e-97 359.4 369 49.6
Oeu021746.1 Olea europaea HOM05D005189 ORTHO05D006093 1.9e-93 347.1 361 49.0
Actinidia21022 Actinidia chinensis HOM05D005189 ORTHO05D006093 5.5e-93 345.5 290 55.2
Mapoly0037s0138 Marchantia polymorpha HOM05D005189 ORTHO05D006093 3.7e-89 332.8 381 42.8
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 1.0e-86 324.7 406 43.3
Pp3c25_650 Physcomitrium patens HOM05D005189 ORTHO05D006093 1.3e-86 324.3 392 43.1
BolC9t53111H Brassica oleracea HOM05D005189 ORTHO05D006093 6.6e-86 322.0 277 53.1
SMO118G0558 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 1.1e-85 321.2 364 47.0
BraA09t35824Z Brassica rapa HOM05D005189 ORTHO05D006093 3.3e-85 319.7 277 52.7
SEGI_10631 Sequoiadendron giganteum HOM05D005189 ORTHO05D006093 1.2e-84 317.8 360 46.1
Lj5C676G0 Lonicera japonica HOM05D005189 ORTHO05D006093 6.1e-84 315.5 341 48.7
DCAR_022674 Daucus carota HOM05D005189 ORTHO05D006093 4.0e-83 312.8 351 47.6
Rhsim01G0287800 Rhododendron simsii HOM05D005189 ORTHO05D006093 4.3e-77 292.7 363 46.3
DCAR_008439 Daucus carota HOM05D005189 ORTHO05D006093 1.2e-76 291.2 423 40.9
AagrBONN_evm.TU.Sc2ySwM_117.3848 Anthoceros agrestis HOM05D005189 ORTHO05D006093 7.5e-74 282.0 348 40.2
FAN25G2462 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.7e-70 270.8 251 53.8
CAN.G726.22 Capsicum annuum HOM05D005189 ORTHO05D006093 1.5e-69 267.7 286 46.9
TPR.G32201 Trifolium pratense HOM05D005189 ORTHO05D006093 2.3e-67 260.4 226 58.4
Lj1A21G66 Lonicera japonica HOM05D005189 ORTHO05D006093 3.1e-59 233.4 346 41.9
CBR_g22284 Chara braunii HOM05D005189 ORTHO05D006093 4.9e-57 226.1 415 33.3
TPR.G32202 Trifolium pratense HOM05D005189 ORTHO05D006093 6.9e-51 205.7 120 75.8
Haze_03587 Corylus avellana HOM05D005189 ORTHO05D006093 1.2e-50 204.9 158 57.6
Haze_03588 Corylus avellana HOM05D005189 ORTHO05D006093 1.2e-50 204.9 136 69.1
COL.COLO4_33288 Corchorus olitorius HOM05D005189 ORTHO05D006093 2.1e-47 194.1 202 50.5
Haze_03584 Corylus avellana HOM05D002736 ORTHO05D003882 2.4e-43 180.6 143 56.6
Aqoxy22s002 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 8.4e-41 172.2 152 52.6
Zm00001eb306860 Zea mays HOM05D001670 ORTHO05D006093 6.0e-39 166.0 183 45.4
Cre03.g149500 Chlamydomonas reinhardtii HOM05D005189 ORTHO05D006093 1.1e-35 155.2 447 27.5
Os01g0578200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 3.4e-34 150.2 121 53.7
Zm00001eb265340 Zea mays HOM05D005189 ORTHO05D006093 2.9e-33 147.1 100 64.0
Thecc.05G196300 Theobroma cacao HOM05D005189 ORTHO05D006093 3.5e-31 140.2 95 64.2
Glyma.11G155468 Glycine max HOM05D005189 ORTHO05D006093 5.7e-29 132.9 96 68.8
HanXRQChr04g0111201 Helianthus annuus HOM05D005189 ORTHO05D006093 2.1e-28 131.0 89 65.2
MCO15G205 Micromonas commoda HOM05D005189 ORTHO05D006093 3.7e-28 130.2 345 30.1
PRCOL_00005294 Prasinoderma coloniale HOM05D005189 ORTHO05D006093 8.2e-28 129.0 388 28.1
Zm00001eb129840 Zea mays HOM05D001670 ORTHO05D006093 8.2e-28 129.0 154 43.5
Zm00001eb312720 Zea mays HOM05D005189 ORTHO05D006093 6.9e-27 125.9 83 66.3
Lj1A21T72 Lonicera japonica HOM05D005189 ORTHO05D006093 1.3e-25 121.7 73 72.6
Zm00001eb092500 Zea mays HOM05D005189 ORTHO05D006093 1.0e-22 112.1 154 39.0
SMO143G0306 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 2.2e-20 104.4 107 46.7
SMO143G0318 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 1.2e-15 88.6 97 46.4
TAR633G0010 Trochodendron aralioides HOM05D000322 ORTHO05D000186 1.5e-13 81.6 49 69.4
Prupe.1G192100 Prunus persica HOM05D005189 ORTHO05D006093 6.3e-12 76.3 65 60.0
Zm00001eb068830 Zea mays HOM05D005189 ORTHO05D006093 8.2e-12 75.9 42 69.0
ATR0665G503 Amborella trichopoda HOM05D006130 ORTHO05D007491 5.3e-11 73.2 376 21.5
HanXRQChr14g0445741 Helianthus annuus HOM05D006130 ORTHO05D007491 3.8e-09 67.0 364 21.2
arahy.Tifrunner.gnm1.ann1.V7ULXX Arachis hypogaea HOM05D005189 ORTHO05D006093 4.2e-08 63.5 34 73.5
HPP92_027147 Vanilla planifolia HOM05D006130 ORTHO05D007491 2.1e-07 61.2 353 24.6
SEGI_25559 Sequoiadendron giganteum HOM05D006130 ORTHO05D007491 2.7e-07 60.8 364 20.6
HPP92_016462 Vanilla planifolia HOM05D006130 ORTHO05D007491 4.7e-07 60.1 353 24.6
CANSAT80G2857 Cannabis sativa HOM05D006130 ORTHO05D007491 6.1e-07 59.7 363 22.6
TWI74G0604 Tripterygium wilfordii HOM05D006130 ORTHO05D007491 7.9e-07 59.3 349 22.6
Aqoxy22s003 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 1.8e-06 58.2 37 62.2
EL10Ac9g21113 Beta vulgaris HOM05D005189 ORTHO05D006093 3.0e-06 57.4 55 43.6
Glyma.04G218800 Glycine max HOM05D006130 ORTHO05D007491 3.9e-06 57.0 351 22.2
BcaC09g50853 Brassica carinata HOM05D000344 ORTHO05D000934 6.7e-06 56.2 141 30.5
C01p19890 Brassica napus HOM05D000344 ORTHO05D000934 6.7e-06 56.2 141 30.5
BolC1t01917H Brassica oleracea HOM05D000344 ORTHO05D000934 6.7e-06 56.2 141 30.5


User provided reference genes

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