Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 3.0e-125 451.8 225 100.0
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 2.6e-92 342.4 220 74.1
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 4.4e-92 341.7 220 74.1
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 1.3e-91 340.1 221 74.7
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 1.7e-91 339.7 221 75.1
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 2.7e-89 332.4 225 73.8
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 6.6e-88 327.8 218 73.9
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 3.4e-84 315.5 218 70.6
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 4.4e-84 315.1 220 67.7
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 1.0e-80 303.9 232 63.4
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 3.9e-80 302.0 219 66.2
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 2.5e-79 299.3 219 65.3
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 2.1e-78 296.2 215 66.0
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 2.1e-78 296.2 224 64.3
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 1.1e-77 293.9 225 64.0
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 2.3e-77 292.7 220 65.9
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 1.2e-76 290.4 205 66.8
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 3.4e-76 288.9 211 64.9
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 2.9e-75 285.8 216 63.9
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 8.4e-75 284.3 218 64.7
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 1.1e-74 283.9 218 62.8
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 2.1e-73 279.6 225 60.4
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 4.6e-73 278.5 220 64.1
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 1.0e-72 277.3 219 58.9
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 1.3e-72 276.9 213 61.5
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 1.7e-72 276.6 214 62.1
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 5.1e-72 275.0 229 56.8
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 5.1e-72 275.0 218 59.2
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 1.1e-71 273.9 213 65.3
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 1.9e-71 273.1 221 59.7
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 4.3e-71 271.9 188 63.3
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 4.3e-71 271.9 196 62.8
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 4.3e-71 271.9 198 64.6
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 5.6e-71 271.6 219 59.8
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 9.6e-71 270.8 219 59.8
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 1.6e-70 270.0 202 63.4
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 3.6e-70 268.9 211 62.1
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 6.2e-70 268.1 202 63.9
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 8.1e-70 267.7 221 58.4
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 1.4e-69 266.9 224 59.8
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 6.8e-69 264.6 221 58.4
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 8.9e-69 264.2 212 57.5
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 4.4e-68 261.9 219 59.8
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 4.4e-68 261.9 221 57.9
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 5.8e-68 261.5 224 55.4
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.7e-67 260.0 216 58.3
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 2.2e-67 259.6 212 57.5
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 2.2e-67 259.6 213 56.8
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 3.8e-67 258.8 265 49.8
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 6.4e-67 258.1 199 58.3
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 1.1e-66 257.3 219 58.4
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.1e-66 257.3 220 58.6
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.4e-66 256.9 196 62.2
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 1.9e-66 256.5 232 57.8
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 1.9e-66 256.5 207 60.9
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 2.4e-66 256.1 202 61.4
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 5.4e-66 255.0 194 61.3
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 5.4e-66 255.0 217 55.8
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 5.4e-66 255.0 202 61.4
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 7.1e-66 254.6 196 57.1
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.6e-65 253.4 219 57.5
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 2.1e-65 253.1 221 59.3
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 3.5e-65 252.3 219 55.7
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 6.0e-65 251.5 196 59.7
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 6.0e-65 251.5 239 54.0
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 1.0e-64 250.8 228 57.5
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 2.3e-64 249.6 225 57.8
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 3.0e-64 249.2 221 56.6
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 3.9e-64 248.8 263 50.6
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 6.6e-64 248.1 217 54.8
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 8.7e-64 247.7 216 56.5
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.9e-63 246.5 225 54.2
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 3.3e-63 245.7 213 56.8
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 7.3e-63 244.6 206 54.9
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 9.6e-63 244.2 225 55.6
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 1.3e-62 243.8 220 56.4
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 1.3e-62 243.8 211 55.0
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 2.1e-62 243.0 210 54.3
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 2.1e-62 243.0 218 56.0
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 2.8e-62 242.7 208 55.3
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 2.8e-62 242.7 206 56.8
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 6.2e-62 241.5 225 54.7
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.1e-61 240.7 231 54.5
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.4e-61 240.4 218 57.3
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 2.4e-61 239.6 227 55.1
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 3.1e-61 239.2 209 55.5
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 5.3e-61 238.4 218 52.8
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 6.9e-61 238.0 207 56.5
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 9.0e-61 237.7 208 53.4
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 9.0e-61 237.7 213 54.0
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 9.0e-61 237.7 210 54.8
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 9.0e-61 237.7 222 50.9
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 2.0e-60 236.5 196 57.1
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 2.0e-60 236.5 214 52.3
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 2.6e-60 236.1 225 52.0
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 2.6e-60 236.1 195 56.9
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 7.6e-60 234.6 218 53.2
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 9.9e-60 234.2 205 55.1
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 1.3e-59 233.8 223 54.7
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 1.3e-59 233.8 209 54.5
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 1.7e-59 233.4 231 53.7
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 1.7e-59 233.4 193 54.9
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 2.9e-59 232.6 206 55.8
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 8.4e-59 231.1 229 51.1
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.1e-58 230.7 223 52.5
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 1.1e-58 230.7 221 55.7
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 1.4e-58 230.3 200 57.0
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 1.9e-58 229.9 221 52.9
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 4.2e-58 228.8 209 52.6
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 4.2e-58 228.8 209 54.1
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 3.5e-57 225.7 234 51.7
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 4.6e-57 225.3 209 53.6
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 4.6e-57 225.3 203 54.2
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 6.0e-57 224.9 209 53.6
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 1.7e-56 223.4 209 52.6
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 1.7e-56 223.4 221 51.6
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 3.9e-56 222.2 181 59.7
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 6.6e-56 221.5 219 52.5
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 6.6e-56 221.5 219 52.5
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 6.6e-56 221.5 202 54.0
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 5.6e-55 218.4 161 64.6
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 1.3e-54 217.2 221 52.5
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 2.1e-54 216.5 221 52.0
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 4.8e-54 215.3 221 52.9
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 1.1e-53 214.2 233 48.1
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 9.0e-53 211.1 210 48.1
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 2.2e-51 206.5 218 46.8
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 3.8e-51 205.7 187 52.4
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 6.4e-51 204.9 217 47.9
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 1.1e-50 204.1 213 49.8
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 1.1e-50 204.1 182 51.1
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 2.4e-50 203.0 206 47.1
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 2.4e-50 203.0 228 45.2
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 1.2e-49 200.7 216 46.8
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 2.1e-49 199.9 219 47.0
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 4.6e-49 198.7 206 48.1
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 6.0e-49 198.4 219 46.6
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 3.3e-47 192.6 141 61.7
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 7.4e-47 191.4 209 48.8
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 6.2e-46 188.3 222 45.5
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 6.2e-46 188.3 222 45.5
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 8.1e-46 188.0 189 51.3
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 5.3e-45 185.3 210 46.7
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 5.3e-45 185.3 210 46.2
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 3.4e-44 182.6 135 59.3
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 5.8e-44 181.8 209 45.5
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 7.6e-44 181.4 205 49.8
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 9.3e-42 174.5 193 45.6
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 1.8e-40 170.2 141 56.7
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 1.5e-39 167.2 208 43.3
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 1.3e-38 164.1 208 42.8
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 3.7e-38 162.5 140 55.7
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.4e-37 160.6 220 42.7
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 1.8e-37 160.2 253 34.4
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 3.8e-35 152.5 158 47.5
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 5.1e-32 142.1 159 46.5
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 6.7e-32 141.7 182 42.9
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 1.1e-31 141.0 216 38.4
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 2.8e-30 136.3 218 39.4
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 7.7e-28 128.3 144 45.1
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 6.5e-27 125.2 115 53.9
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 1.1e-26 124.4 105 56.2
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 3.2e-26 122.9 144 41.7
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.0e-19 101.3 161 39.8
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 3.9e-16 89.4 69 56.5
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 9.7e-15 84.7 73 53.4
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 1.7e-14 84.0 73 52.1
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 2.8e-14 83.2 73 53.4
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 3.7e-14 82.8 69 56.5
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 1.1e-13 81.3 71 53.5
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 1.8e-13 80.5 65 56.9
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 2.4e-13 80.1 81 50.6
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.2e-12 77.8 62 59.7
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 1.0e-11 74.7 111 37.8
C03p01140 Brassica napus HOM05D004061 ORTHO05D004693 1.9e-10 70.5 111 36.9
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 5.7e-07 58.9 65 50.8
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 9.7e-07 58.2 64 54.7
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 9.7e-07 58.2 77 44.2
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 9.7e-07 58.2 77 44.2
Aa31LG1G22160 Aethionema arabicum HOM05D004061 ORTHO05D004693 3.7e-06 56.2 93 32.3
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 3.7e-06 56.2 64 40.6
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 3.7e-06 56.2 64 48.4
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 8.2e-06 55.1 71 43.7
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 8.2e-06 55.1 63 52.4
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 8.2e-06 55.1 99 37.4
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 8.2e-06 55.1 58 50.0


User provided reference genes

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